Wall clock time and date at job start Sun Mar 29 2020 22:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46949 * 2 1 4 4 C 1.52999 * 109.46949 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47199 * 180.02562 * 4 3 2 6 6 C 1.35091 * 119.99859 * 95.40847 * 5 4 3 7 7 H 1.08004 * 120.00551 * 225.00298 * 6 5 4 8 8 C 1.40022 * 120.00008 * 44.73208 * 6 5 4 9 9 N 1.30754 * 119.99568 * 6.75218 * 8 6 5 10 10 Si 1.86800 * 119.99839 * 186.75196 * 8 6 5 11 11 H 1.48500 * 109.47366 * 59.99831 * 10 8 6 12 12 H 1.48503 * 109.46973 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47136 * 299.99705 * 10 8 6 14 14 C 1.34780 * 120.00343 * 275.41511 * 5 4 3 15 15 O 1.21602 * 119.99328 * 355.14038 * 14 5 4 16 16 C 1.48027 * 119.99936 * 175.14268 * 14 5 4 17 17 O 1.20826 * 120.00387 * 5.67065 * 16 14 5 18 18 C 1.50706 * 119.99534 * 185.66518 * 16 14 5 19 19 C 1.52998 * 117.49988 * 223.74550 * 18 16 14 20 20 C 1.53005 * 117.49549 * 155.08651 * 18 16 14 21 21 H 1.08996 * 109.46781 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46834 * 299.99500 * 1 2 3 23 23 H 1.08992 * 109.47772 * 59.99365 * 1 2 3 24 24 H 1.08999 * 109.46834 * 240.00500 * 2 1 3 25 25 H 1.08996 * 109.47778 * 120.00111 * 2 1 3 26 26 H 1.08999 * 109.46945 * 60.00567 * 3 2 1 27 27 H 1.08988 * 109.47570 * 300.00381 * 3 2 1 28 28 H 1.09003 * 109.47305 * 60.00423 * 4 3 2 29 29 H 1.08996 * 109.47778 * 300.00111 * 4 3 2 30 30 H 0.96995 * 119.99454 * 180.02562 * 9 8 6 31 31 H 1.09000 * 115.55255 * 9.42575 * 18 16 14 32 32 H 1.08999 * 117.50035 * 0.02562 * 19 18 16 33 33 H 1.09000 * 117.49607 * 145.02025 * 19 18 16 34 34 H 1.08997 * 117.49836 * 214.98070 * 20 18 16 35 35 H 1.09002 * 117.49969 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.3869 3.4234 1.1663 7 1 4.0592 4.4331 1.3653 8 6 5.1477 2.7340 2.1184 9 7 5.6515 1.5626 1.8290 10 14 5.4429 3.4878 3.8019 11 1 4.1404 3.7135 4.4785 12 1 6.2713 2.5650 4.6190 13 1 6.1513 4.7837 3.6467 14 6 4.1796 3.4962 -1.1605 15 8 3.9687 2.9298 -2.2156 16 6 4.5696 4.9242 -1.1518 17 8 4.8786 5.4598 -0.1138 18 6 4.5814 5.7098 -2.4379 19 6 5.7760 6.6314 -2.6918 20 6 4.4104 7.2271 -2.3403 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8898 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9564 -0.8898 28 1 3.9337 0.9286 -0.8892 29 1 3.9330 0.9289 0.8908 30 1 6.1781 1.0849 2.4886 31 1 4.1407 5.2081 -3.2993 32 1 6.5536 6.6692 -1.9290 33 1 6.1210 6.7361 -3.7204 34 1 3.8577 7.7236 -3.1378 35 1 4.2890 7.6571 -1.3461 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182668495.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:57 Heat of formation + Delta-G solvation = -46.671032 kcal Electronic energy + Delta-G solvation = -17476.425164 eV Core-core repulsion = 14668.772914 eV Total energy + Delta-G solvation = -2807.652250 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.65475 -37.72652 -35.69036 -35.24762 -33.96938 -31.62024 -28.64285 -26.03436 -24.80607 -23.14077 -22.18005 -20.80696 -20.06556 -18.79600 -17.63833 -15.82125 -15.61204 -14.98038 -14.73654 -14.25455 -14.13880 -14.05402 -13.37402 -13.22114 -12.41716 -12.26948 -12.13057 -11.90544 -11.47758 -11.30863 -11.24938 -11.13159 -10.65684 -10.53808 -10.46333 -10.35542 -10.25395 -10.07150 -9.80025 -9.74255 -9.12081 -8.10559 -7.45884 -6.42138 -4.12124 2.08682 3.17018 3.19560 3.23821 3.92963 3.99253 4.25487 4.49339 4.93358 5.12595 5.21468 5.30887 5.47034 5.50874 5.64180 5.75584 5.80217 5.97475 6.05366 6.19843 6.23039 6.33499 6.35666 6.37738 6.41485 6.55128 6.67933 6.80238 7.05980 7.33258 7.47532 7.88516 8.05906 8.50863 8.97191 9.36527 9.81596 10.56400 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.010320 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.775954 B = 2712.584489 C = 4099.381979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.128 4.128 4 C 0.105 3.895 5 N -0.385 5.385 6 C -0.330 4.330 7 H 0.108 0.892 8 C 0.046 3.954 9 N -0.857 5.857 10 Si 0.924 3.076 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.413 3.587 15 O -0.596 6.596 16 C 0.367 3.633 17 O -0.418 6.418 18 C -0.196 4.196 19 C -0.154 4.154 20 C -0.158 4.158 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.111 0.889 30 H 0.274 0.726 31 H 0.128 0.872 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 3.009 -2.714 5.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.017 4.017 5 N -0.102 5.102 6 C -0.459 4.459 7 H 0.125 0.875 8 C -0.162 4.162 9 N -0.493 5.493 10 Si 0.750 3.250 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.193 1.193 14 C 0.202 3.798 15 O -0.484 6.484 16 C 0.240 3.760 17 O -0.288 6.288 18 C -0.216 4.216 19 C -0.191 4.191 20 C -0.195 4.195 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.129 0.871 30 H 0.085 0.915 31 H 0.146 0.854 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.840 2.858 -2.541 5.419 hybrid contribution 0.219 0.175 0.772 0.822 sum -3.621 3.033 -1.769 5.044 Atomic orbital electron populations 1.21755 0.96571 1.00733 1.01505 1.21416 0.95007 0.97487 1.01743 1.21903 0.97485 0.95848 1.01444 1.21654 0.91212 0.84771 1.04109 1.43081 1.50305 1.11725 1.05068 1.19842 1.31515 1.01133 0.93414 0.87466 1.25716 0.94416 0.95527 1.00521 1.69508 1.30826 1.13309 1.35665 0.86037 0.78777 0.79288 0.80909 1.19580 1.20832 1.19266 1.20332 0.85400 0.89328 0.84761 1.90605 1.56950 1.70120 1.30718 1.23364 0.75400 0.89085 0.88197 1.90359 1.33570 1.71156 1.33707 1.22611 1.05683 0.92646 1.00644 1.22892 0.91512 1.01998 1.02697 1.22930 0.99817 0.93337 1.03439 0.93356 0.93022 0.93063 0.92292 0.92127 0.92240 0.92812 0.92446 0.87118 0.91516 0.85378 0.88293 0.88263 0.88356 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.70 16 2 C -0.12 -1.97 5.93 -26.73 -0.16 -2.13 16 3 C -0.13 -2.60 5.50 -26.73 -0.15 -2.75 16 4 C 0.11 2.52 4.86 -4.04 -0.02 2.50 16 5 N -0.38 -10.04 2.46 -116.01 -0.28 -10.33 16 6 C -0.33 -8.76 7.73 -15.45 -0.12 -8.87 16 7 H 0.11 2.88 6.01 -52.48 -0.32 2.56 16 8 C 0.05 1.19 5.19 -17.34 -0.09 1.10 16 9 N -0.86 -22.69 11.17 55.55 0.62 -22.07 16 10 Si 0.92 20.21 29.56 -169.99 -5.03 15.19 16 11 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 14 C 0.41 10.59 7.59 -12.25 -0.09 10.50 16 15 O -0.60 -15.88 16.04 5.28 0.08 -15.80 16 16 C 0.37 8.37 6.84 -30.29 -0.21 8.17 16 17 O -0.42 -10.10 13.52 5.94 0.08 -10.02 16 18 C -0.20 -3.55 5.93 -91.77 -0.54 -4.09 16 19 C -0.15 -2.30 10.14 -26.69 -0.27 -2.57 16 20 C -0.16 -2.30 10.05 -26.69 -0.27 -2.57 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 1.13 8.14 -51.94 -0.42 0.71 16 28 H 0.06 1.43 7.53 -51.93 -0.39 1.03 16 29 H 0.11 2.78 5.58 -51.93 -0.29 2.49 16 30 H 0.27 6.81 8.29 -40.82 -0.34 6.47 16 31 H 0.13 2.28 7.74 -51.93 -0.40 1.88 16 32 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.10 1.53 7.89 -51.93 -0.41 1.12 16 LS Contribution 298.21 15.07 4.49 4.49 Total: -1.00 -29.22 298.21 -6.75 -35.97 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.17 Total: 4.97 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.55 Total: -2.41 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.34 Total: -32.40 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: 0.16 Total: -25.81 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.22 -6.75 -35.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182668495.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.699 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds