Wall clock time and date at job start Sun Mar 29 2020 23:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50703 * 119.99721 * 2 1 4 4 O 1.45196 * 109.46944 * 135.00106 * 3 2 1 5 5 C 1.34635 * 117.00347 * 175.03183 * 4 3 2 6 6 O 1.21513 * 119.99488 * 5.10139 * 5 4 3 7 7 N 1.34772 * 120.00313 * 185.10104 * 5 4 3 8 8 C 1.46498 * 119.99983 * 185.36807 * 7 5 4 9 9 C 1.50700 * 110.01779 * 53.98498 * 8 7 5 10 10 H 1.08002 * 120.00136 * 243.99523 * 9 8 7 11 11 C 1.37884 * 119.99784 * 63.99244 * 9 8 7 12 12 N 1.31513 * 119.99526 * 184.28253 * 11 9 8 13 13 Si 1.86800 * 120.00130 * 4.28076 * 11 9 8 14 14 H 1.48496 * 109.46873 * 94.10928 * 13 11 9 15 15 H 1.48496 * 109.47020 * 214.11250 * 13 11 9 16 16 H 1.48497 * 109.46871 * 334.11215 * 13 11 9 17 17 C 1.54267 * 110.03274 * 292.54298 * 8 7 5 18 18 C 1.54895 * 104.19617 * 217.10353 * 17 8 7 19 19 C 1.54892 * 102.74681 * 37.94287 * 18 17 8 20 20 C 1.53877 * 110.03204 * 175.37565 * 8 7 5 21 21 H 1.07996 * 119.99841 * 359.97438 * 1 2 3 22 22 H 1.07995 * 119.99846 * 180.02562 * 1 2 3 23 23 H 1.07999 * 119.99418 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47398 * 15.00398 * 3 2 1 25 25 H 1.08995 * 109.46771 * 254.99744 * 3 2 1 26 26 H 0.97001 * 120.00486 * 5.37018 * 7 5 4 27 27 H 0.97005 * 119.99302 * 179.97438 * 12 11 9 28 28 H 1.08998 * 110.48697 * 335.78366 * 17 8 7 29 29 H 1.08998 * 110.48651 * 98.42881 * 17 8 7 30 30 H 1.09005 * 110.75891 * 279.63003 * 18 17 8 31 31 H 1.08998 * 110.91399 * 156.33298 * 18 17 8 32 32 H 1.08996 * 110.48666 * 203.37860 * 19 18 17 33 33 H 1.09002 * 110.48709 * 80.73812 * 19 18 17 34 34 H 1.09003 * 110.03271 * 238.56822 * 20 8 7 35 35 H 1.08995 * 110.03161 * 0.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1438 1.2403 0.9680 5 6 3.9816 2.2929 1.0204 6 8 3.7618 3.2785 0.3445 7 7 5.0640 2.2534 1.8224 8 6 5.9103 3.4402 1.9696 9 6 5.0724 4.6235 2.3804 10 1 4.9804 5.4747 1.7220 11 6 4.4233 4.6195 3.5969 12 7 3.6252 5.6137 3.9195 13 14 4.6774 3.2019 4.7865 14 1 5.7589 3.5470 5.7438 15 1 3.4182 2.9496 5.5321 16 1 5.0572 1.9823 4.0293 17 6 6.6352 3.7403 0.6414 18 6 8.0363 4.2368 1.0771 19 6 8.3574 3.3310 2.2918 20 6 7.0052 3.1799 3.0190 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 1.3856 2.1161 0.2660 25 1 2.4755 1.4868 -0.9926 26 1 5.2828 1.4393 2.3022 27 1 3.1682 5.6107 4.7752 28 1 6.7212 2.8349 0.0406 29 1 6.1101 4.5184 0.0875 30 1 7.9993 5.2845 1.3756 31 1 8.7663 4.0890 0.2813 32 1 9.0889 3.8103 2.9423 33 1 8.7215 2.3595 1.9576 34 1 6.9311 3.9100 3.8249 35 1 6.9072 2.1705 3.4183 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194349422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:19 Heat of formation + Delta-G solvation = -53.224283 kcal Electronic energy + Delta-G solvation = -17896.035075 eV Core-core repulsion = 15088.098656 eV Total energy + Delta-G solvation = -2807.936420 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.62635 -37.89567 -35.56437 -33.67662 -32.93806 -32.09684 -28.14613 -27.92645 -26.11782 -23.89248 -20.99128 -20.28117 -19.93807 -18.90989 -17.65979 -16.84715 -16.04081 -15.60712 -14.89750 -14.76019 -14.26767 -14.10121 -13.38018 -13.01237 -12.58734 -12.35725 -12.20849 -12.07155 -11.22240 -11.07907 -11.04163 -10.96066 -10.52362 -10.28233 -10.17542 -9.88675 -9.86815 -9.61686 -9.45153 -9.31828 -9.13929 -8.59044 -7.77130 -6.11179 -4.10230 2.07637 3.15457 3.26137 3.32979 3.39628 3.98251 4.37296 4.82114 5.11068 5.16606 5.39579 5.46807 5.55250 5.58631 5.64900 5.74487 5.86990 6.18753 6.26315 6.36342 6.42889 6.47778 6.51638 6.55692 6.65082 6.69406 6.79605 7.02638 7.09889 7.24734 7.67749 7.75900 8.33856 8.71676 9.00878 9.49569 9.53269 11.00674 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022712 B = 0.009287 C = 0.007808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.544503 B = 3014.234267 C = 3585.431956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.114 3.886 4 O -0.387 6.387 5 C 0.641 3.359 6 O -0.552 6.552 7 N -0.700 5.700 8 C 0.274 3.726 9 C -0.488 4.488 10 H 0.081 0.919 11 C 0.074 3.926 12 N -0.885 5.885 13 Si 0.881 3.119 14 H -0.283 1.283 15 H -0.298 1.298 16 H -0.254 1.254 17 C -0.108 4.108 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.135 4.135 21 H 0.100 0.900 22 H 0.104 0.896 23 H 0.116 0.884 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.380 0.620 27 H 0.263 0.737 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.226 -10.362 -4.468 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.167 4.167 3 C 0.038 3.962 4 O -0.303 6.303 5 C 0.393 3.607 6 O -0.438 6.438 7 N -0.360 5.360 8 C 0.193 3.807 9 C -0.526 4.526 10 H 0.099 0.901 11 C -0.130 4.130 12 N -0.522 5.522 13 Si 0.710 3.290 14 H -0.210 1.210 15 H -0.225 1.225 16 H -0.179 1.179 17 C -0.147 4.147 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.173 4.173 21 H 0.118 0.882 22 H 0.122 0.878 23 H 0.134 0.866 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.214 0.786 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.931 -9.763 -4.682 10.998 hybrid contribution -0.121 -1.054 1.020 1.472 sum 1.809 -10.818 -3.661 11.563 Atomic orbital electron populations 1.23840 0.95495 1.02311 1.00093 1.22787 0.95677 0.98048 1.00220 1.21739 0.86993 0.95705 0.91714 1.86228 1.40122 1.45319 1.58663 1.18240 0.80410 0.80952 0.81102 1.90932 1.74824 1.32285 1.45788 1.46699 1.25287 1.16545 1.47428 1.19094 0.87216 0.82877 0.91497 1.21113 1.28138 1.01015 1.02362 0.90106 1.25096 0.94224 0.95513 0.98167 1.69940 1.28058 1.31769 1.22448 0.87115 0.76898 0.83970 0.80986 1.20972 1.22540 1.17903 1.22554 0.94538 0.99987 0.97591 1.22410 0.96720 0.99921 0.96628 1.22270 0.96807 0.99017 0.97364 1.22784 0.94763 1.00476 0.99279 0.88158 0.87793 0.86618 0.90919 0.90753 0.78556 0.92696 0.93632 0.91017 0.91145 0.92923 0.92369 0.92616 0.90234 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 14.31 29.01 0.42 -1.60 16 2 C -0.15 -1.96 9.91 -36.03 -0.36 -2.31 16 3 C 0.11 1.91 5.91 36.01 0.21 2.12 16 4 O -0.39 -7.88 10.25 -40.31 -0.41 -8.29 16 5 C 0.64 14.99 8.19 54.05 0.44 15.43 16 6 O -0.55 -14.58 14.42 -19.28 -0.28 -14.86 16 7 N -0.70 -15.43 3.41 -52.50 -0.18 -15.61 16 8 C 0.27 6.23 0.47 -131.85 -0.06 6.17 16 9 C -0.49 -13.61 7.05 -34.44 -0.24 -13.85 16 10 H 0.08 2.55 7.74 -52.49 -0.41 2.14 16 11 C 0.07 2.11 5.36 -17.82 -0.10 2.01 16 12 N -0.89 -27.24 13.96 55.43 0.77 -26.46 16 13 Si 0.88 21.34 23.89 -169.99 -4.06 17.28 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.30 -7.53 7.11 56.52 0.40 -7.12 16 16 H -0.25 -5.52 3.97 56.52 0.22 -5.29 16 17 C -0.11 -2.24 5.12 -25.07 -0.13 -2.37 16 18 C -0.12 -2.07 6.91 -24.73 -0.17 -2.24 16 19 C -0.12 -1.93 6.83 -25.07 -0.17 -2.10 16 20 C -0.13 -2.69 4.13 -25.61 -0.11 -2.79 16 21 H 0.10 1.10 7.90 -52.49 -0.41 0.68 16 22 H 0.10 0.93 8.06 -52.49 -0.42 0.50 16 23 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 24 H 0.07 1.28 7.86 -51.93 -0.41 0.87 16 25 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 26 H 0.38 7.47 6.86 -40.82 -0.28 7.19 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.04 0.89 8.05 -51.93 -0.42 0.47 16 29 H 0.07 1.65 7.56 -51.93 -0.39 1.26 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.73 5.76 -51.93 -0.30 1.43 16 35 H 0.05 0.95 6.19 -51.93 -0.32 0.63 16 LS Contribution 281.30 15.07 4.24 4.24 Total: -1.00 -32.27 281.30 -5.39 -37.67 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.21 Total: 7.57 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -0.26 Total: -1.53 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.59 Total: -42.08 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.69 Total: -23.15 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.06 Total: 17.28 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.27 -5.39 -37.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194349422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.559 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds