Wall clock time and date at job start Sun Mar 29 2020 22:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 119.99752 * 2 1 4 4 C 1.52995 * 109.47270 * 0.02562 * 3 2 1 5 5 C 1.53002 * 109.46962 * 239.99908 * 3 2 1 6 6 C 1.50708 * 109.47220 * 120.00435 * 3 2 1 7 7 O 1.21276 * 119.99434 * 353.24613 * 6 3 2 8 8 N 1.34770 * 119.99931 * 173.25329 * 6 3 2 9 9 C 1.47584 * 134.49681 * 5.09885 * 8 6 3 10 10 C 1.53941 * 86.11676 * 155.36565 * 9 8 6 11 11 O 1.42903 * 113.74482 * 269.15929 * 10 9 8 12 12 C 1.50694 * 113.74255 * 137.95746 * 10 9 8 13 13 H 1.08009 * 120.00111 * 5.48584 * 12 10 9 14 14 C 1.37876 * 120.00573 * 185.49244 * 12 10 9 15 15 N 1.31522 * 119.99907 * 12.36553 * 14 12 10 16 16 Si 1.86800 * 120.00518 * 192.36909 * 14 12 10 17 17 H 1.48496 * 109.47331 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.46697 * 299.99895 * 16 14 12 19 19 H 1.48503 * 109.47013 * 59.99471 * 16 14 12 20 20 C 1.47577 * 134.48933 * 185.11162 * 8 6 3 21 21 H 1.08006 * 119.99913 * 180.02562 * 1 2 3 22 22 H 1.08000 * 120.00669 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.00158 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47196 * 186.37026 * 4 3 2 25 25 H 1.08996 * 109.47100 * 306.36967 * 4 3 2 26 26 H 1.09004 * 109.47324 * 66.37282 * 4 3 2 27 27 H 1.08998 * 109.47413 * 302.60773 * 5 3 2 28 28 H 1.09002 * 109.47194 * 62.60747 * 5 3 2 29 29 H 1.09005 * 109.46875 * 182.60558 * 5 3 2 30 30 H 1.09009 * 113.76261 * 41.06643 * 9 8 6 31 31 H 1.08996 * 113.87277 * 269.68126 * 9 8 6 32 32 H 0.96698 * 114.00569 * 172.46072 * 11 10 9 33 33 H 0.97005 * 119.99549 * 356.01164 * 15 14 12 34 34 H 1.09005 * 113.77384 * 90.33617 * 20 8 6 35 35 H 1.08998 * 113.77107 * 318.93402 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9430 1.3861 -1.2493 6 6 2.9299 1.3850 1.2305 7 8 2.8448 0.5320 2.0883 8 7 3.7992 2.4043 1.3775 9 6 4.0946 3.6304 0.6111 10 6 4.6278 4.2047 1.9361 11 8 3.6400 4.8974 2.7019 12 6 5.9090 4.9840 1.7878 13 1 6.3171 5.1704 0.8052 14 6 6.5606 5.4589 2.9062 15 7 6.2104 5.0350 4.1009 16 14 7.9408 6.7046 2.7247 17 1 8.4729 7.0529 4.0666 18 1 9.0273 6.1222 1.8967 19 1 7.4190 7.9291 2.0664 20 6 4.8382 2.7425 2.3694 21 1 -0.5400 -0.9354 0.0004 22 1 -0.5401 0.9352 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.6093 3.4079 -0.1134 25 1 0.3696 2.3483 -0.8266 26 1 0.5203 2.4763 0.9424 27 1 3.6201 0.5323 -1.2730 28 1 2.3130 1.3750 -2.1386 29 1 3.5227 2.3090 -1.2262 30 1 3.2062 4.1397 0.2375 31 1 4.8623 3.4998 -0.1516 32 1 3.9381 5.1594 3.5836 33 1 5.4563 4.4329 4.2001 34 1 5.8248 2.3492 2.1239 35 1 4.5437 2.5428 3.3997 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296601592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:08 Heat of formation + Delta-G solvation = -32.995567 kcal Electronic energy + Delta-G solvation = -17848.300606 eV Core-core repulsion = 15041.241369 eV Total energy + Delta-G solvation = -2807.059237 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.11345 -38.06464 -35.88381 -34.36640 -32.35054 -30.97657 -28.30861 -27.35550 -25.56317 -24.99953 -23.47097 -20.65238 -19.16305 -18.26716 -17.68396 -16.21778 -16.09838 -15.11894 -14.73537 -14.58537 -14.14815 -13.92048 -13.65849 -12.92549 -12.85553 -12.51635 -12.32069 -12.12060 -11.81605 -11.56835 -11.43551 -11.15365 -11.11795 -10.90944 -10.68012 -10.49479 -10.22706 -9.56394 -9.31315 -9.14697 -8.80779 -8.38385 -7.86977 -6.69074 -4.48527 2.33344 3.12186 3.29894 3.33182 3.51395 3.52449 4.30601 4.67129 4.76885 4.82842 5.03907 5.14139 5.32329 5.41714 5.59801 5.66432 5.70319 5.78471 5.80126 5.96199 6.02905 6.12415 6.21465 6.24213 6.33115 6.48732 6.58406 6.69678 6.79214 6.83594 7.62597 8.07077 8.35255 8.46608 8.68687 8.81484 9.23697 10.63599 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.049287 B = 0.006238 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.967139 B = 4487.645846 C = 4602.023746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.053 4.053 4 C -0.143 4.143 5 C -0.139 4.139 6 C 0.540 3.460 7 O -0.557 6.557 8 N -0.630 5.630 9 C 0.114 3.886 10 C 0.215 3.785 11 O -0.568 6.568 12 C -0.619 4.619 13 H 0.065 0.935 14 C 0.033 3.967 15 N -0.895 5.895 16 Si 1.073 2.927 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.079 3.921 21 H 0.097 0.903 22 H 0.103 0.897 23 H 0.110 0.890 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.375 0.625 33 H 0.268 0.732 34 H 0.084 0.916 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 -3.578 -9.366 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.134 4.134 3 C -0.056 4.056 4 C -0.200 4.200 5 C -0.196 4.196 6 C 0.329 3.671 7 O -0.436 6.436 8 N -0.364 5.364 9 C -0.009 4.009 10 C 0.175 3.825 11 O -0.376 6.376 12 C -0.657 4.657 13 H 0.083 0.917 14 C -0.173 4.173 15 N -0.532 5.532 16 Si 0.899 3.101 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.043 4.043 21 H 0.115 0.885 22 H 0.121 0.879 23 H 0.128 0.872 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.225 0.775 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.388 -3.439 -8.611 10.724 hybrid contribution -0.785 -0.976 -0.369 1.306 sum -6.173 -4.414 -8.980 11.757 Atomic orbital electron populations 1.23906 0.95857 1.01978 1.02039 1.22521 0.95647 0.96666 0.98526 1.19841 0.95744 0.95502 0.94523 1.21956 0.98530 0.97085 1.02436 1.21868 0.99230 1.02980 0.95550 1.20002 0.80161 0.79748 0.87150 1.90634 1.69282 1.39884 1.43791 1.50120 1.35236 1.21798 1.29226 1.23444 0.99092 0.81719 0.96598 1.20161 0.87495 0.87369 0.87521 1.86219 1.42083 1.77560 1.31738 1.22211 1.08061 1.39057 0.96366 0.91675 1.26018 1.01446 0.97704 0.92164 1.70975 1.26787 1.31187 1.24259 0.83481 0.74851 0.75575 0.76165 1.20564 1.21149 1.21010 1.24363 0.89512 0.97746 0.92683 0.88488 0.87927 0.87206 0.91287 0.91422 0.91994 0.92226 0.91622 0.91266 0.90761 0.89259 0.77515 0.91993 0.89798 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.52 13.71 29.02 0.40 -2.12 16 2 C -0.12 -1.68 8.01 -36.03 -0.29 -1.97 16 3 C -0.05 -0.82 0.75 -156.81 -0.12 -0.94 16 4 C -0.14 -2.00 7.03 37.16 0.26 -1.74 16 5 C -0.14 -1.82 8.31 37.16 0.31 -1.51 16 6 C 0.54 11.05 6.71 -10.98 -0.07 10.97 16 7 O -0.56 -13.33 16.78 5.56 0.09 -13.23 16 8 N -0.63 -13.14 3.51 -178.32 -0.63 -13.77 16 9 C 0.11 2.23 5.76 -2.98 -0.02 2.21 16 10 C 0.22 5.04 1.07 -90.85 -0.10 4.94 16 11 O -0.57 -13.88 13.45 -35.23 -0.47 -14.36 16 12 C -0.62 -15.54 8.57 -34.44 -0.30 -15.83 16 13 H 0.07 1.59 7.85 -52.48 -0.41 1.18 16 14 C 0.03 0.84 5.28 -17.82 -0.09 0.74 16 15 N -0.90 -24.11 13.09 55.43 0.73 -23.39 16 16 Si 1.07 22.74 29.92 -169.99 -5.09 17.65 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.29 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 20 C 0.08 1.83 7.44 -2.98 -0.02 1.81 16 21 H 0.10 1.04 8.06 -52.48 -0.42 0.62 16 22 H 0.10 1.20 5.68 -52.49 -0.30 0.90 16 23 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 24 H 0.07 0.99 5.73 -51.93 -0.30 0.70 16 25 H 0.07 0.76 7.08 -51.93 -0.37 0.39 16 26 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.92 5.53 -51.93 -0.29 0.63 16 30 H 0.07 1.35 6.03 -51.92 -0.31 1.03 16 31 H 0.09 1.60 7.69 -51.93 -0.40 1.20 16 32 H 0.38 9.13 6.70 45.56 0.31 9.43 16 33 H 0.27 7.13 5.19 -40.82 -0.21 6.92 16 34 H 0.08 1.92 8.09 -51.93 -0.42 1.50 16 35 H 0.06 1.55 7.88 -51.93 -0.41 1.14 16 LS Contribution 284.42 15.07 4.29 4.29 Total: -1.00 -29.58 284.42 -5.13 -34.71 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -4.01 Total: 11.55 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.04 Total: -3.45 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.10 Total: -37.16 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.38 Total: -27.59 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.09 Total: 17.65 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.58 -5.13 -34.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296601592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.711 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds