Wall clock time and date at job start Sun Mar 29 2020 22:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32996 * 119.99995 * 2 1 4 4 C 1.50698 * 120.00154 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46956 * 265.00324 * 4 3 2 6 6 C 1.47100 * 120.00240 * 179.97438 * 3 2 1 7 7 O 1.21620 * 119.99643 * 0.02562 * 6 3 2 8 8 N 1.34773 * 120.00403 * 179.97438 * 6 3 2 9 9 C 1.47581 * 134.49354 * 180.02562 * 8 6 3 10 10 C 1.53945 * 86.11895 * 155.35947 * 9 8 6 11 11 O 1.42904 * 113.73986 * 269.15696 * 10 9 8 12 12 C 1.50694 * 113.74220 * 137.95139 * 10 9 8 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 10 9 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47582 * 134.48982 * 359.97438 * 8 6 3 21 21 H 1.08996 * 109.46653 * 59.99980 * 1 2 3 22 22 H 1.08993 * 109.46794 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47015 * 300.00685 * 1 2 3 24 24 H 1.07997 * 120.00041 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.47122 * 25.00244 * 4 3 2 26 26 H 1.08994 * 109.47486 * 145.00220 * 4 3 2 27 27 H 1.09004 * 109.46849 * 179.97438 * 5 4 3 28 28 H 1.08995 * 109.46998 * 299.99727 * 5 4 3 29 29 H 1.09001 * 109.47638 * 60.00083 * 5 4 3 30 30 H 1.09001 * 113.77016 * 41.05438 * 9 8 6 31 31 H 1.09005 * 113.86980 * 269.67513 * 9 8 6 32 32 H 0.96699 * 113.99284 * 178.07513 * 11 10 9 33 33 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 34 34 H 1.09002 * 113.76615 * 90.34214 * 20 8 6 35 35 H 1.08991 * 113.77327 * 318.94082 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4186 2.4569 -0.0006 5 6 1.2730 2.9610 -1.4378 6 6 3.6430 1.1518 0.0006 7 8 4.2511 0.0986 0.0006 8 7 4.3169 2.3190 0.0000 9 6 5.7458 2.6883 -0.0001 10 6 5.2955 4.0136 -0.6411 11 8 5.2820 3.9863 -2.0698 12 6 5.9954 5.2259 -0.0832 13 1 6.7364 5.1118 0.6942 14 6 5.6897 6.4811 -0.5652 15 7 4.7877 6.6202 -1.5121 16 14 6.5567 7.9840 0.1270 17 1 5.7865 8.5119 1.2817 18 1 7.9217 7.6062 0.5734 19 1 6.6511 9.0287 -0.9242 20 6 3.9223 3.7411 -0.0015 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3632 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 2.0470 -0.9353 0.0004 25 1 0.4301 2.3060 0.4334 26 1 1.9657 3.1926 0.5888 27 1 0.7276 3.9048 -1.4382 28 1 2.2613 3.1119 -1.8718 29 1 0.7258 2.2254 -2.0273 30 1 6.3594 2.0697 -0.6550 31 1 6.1714 2.8046 0.9966 32 1 4.9717 4.8072 -2.4758 33 1 4.5725 7.5032 -1.8509 34 1 3.8098 4.1669 0.9956 35 1 3.0806 3.9628 -0.6575 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321051013.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:19 Heat of formation + Delta-G solvation = -38.338225 kcal Electronic energy + Delta-G solvation = -17781.446494 eV Core-core repulsion = 14974.155582 eV Total energy + Delta-G solvation = -2807.290912 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.74134 -37.51929 -35.73541 -33.96065 -32.19262 -31.25507 -28.93409 -27.19665 -25.27538 -25.13594 -22.97291 -20.93806 -18.99946 -17.82889 -17.25230 -16.06346 -15.96637 -15.07713 -14.71585 -14.24990 -13.77559 -13.76286 -13.18364 -12.97044 -12.69913 -12.53060 -12.21762 -12.05463 -11.90943 -11.78697 -11.54868 -11.06824 -10.96306 -10.66081 -10.59989 -10.47481 -10.23089 -9.57016 -9.17522 -8.81436 -8.75630 -8.32326 -7.76118 -6.39049 -4.48677 1.73261 3.14273 3.22709 3.26245 3.64316 3.84009 4.19056 4.83481 4.93739 5.07278 5.28266 5.33149 5.51817 5.57914 5.69463 5.73995 5.85185 5.90705 6.05884 6.15024 6.19776 6.25484 6.37986 6.51224 6.55279 6.57497 6.75937 6.78755 6.92627 7.12935 7.63719 7.83637 8.53376 8.54444 8.83779 9.22243 9.47218 10.67560 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036532 B = 0.006927 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.265092 B = 4040.942903 C = 4413.948910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 C -0.161 4.161 4 C -0.098 4.098 5 C -0.151 4.151 6 C 0.564 3.436 7 O -0.572 6.572 8 N -0.623 5.623 9 C 0.110 3.890 10 C 0.238 3.762 11 O -0.572 6.572 12 C -0.536 4.536 13 H 0.071 0.929 14 C 0.073 3.927 15 N -0.898 5.898 16 Si 0.907 3.093 17 H -0.278 1.278 18 H -0.271 1.271 19 H -0.284 1.284 20 C 0.064 3.936 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.122 0.878 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.392 0.608 33 H 0.273 0.727 34 H 0.079 0.921 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 -3.806 2.377 9.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.118 4.118 3 C -0.164 4.164 4 C -0.135 4.135 5 C -0.208 4.208 6 C 0.355 3.645 7 O -0.455 6.455 8 N -0.355 5.355 9 C -0.012 4.012 10 C 0.196 3.804 11 O -0.385 6.385 12 C -0.574 4.574 13 H 0.089 0.911 14 C -0.130 4.130 15 N -0.539 5.539 16 Si 0.734 3.266 17 H -0.203 1.203 18 H -0.196 1.196 19 H -0.209 1.209 20 C -0.058 4.058 21 H 0.089 0.911 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.140 0.860 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.247 0.753 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.904 -4.957 2.342 9.619 hybrid contribution 0.144 1.394 0.335 1.441 sum -7.759 -3.563 2.677 8.948 Atomic orbital electron populations 1.20917 0.92520 1.02318 1.02354 1.23408 0.95839 0.97773 0.94749 1.21510 0.93006 0.96323 1.05529 1.20829 0.99534 0.94543 0.98571 1.21827 1.03030 1.00384 0.95556 1.18038 0.87241 0.82487 0.76737 1.90700 1.70300 1.30921 1.53538 1.50016 1.09785 1.05785 1.69945 1.23468 0.82375 0.95383 1.00015 1.19856 0.89475 0.90747 0.80331 1.86064 1.89495 1.44003 1.18914 1.21522 1.23712 0.90620 1.21550 0.91120 1.25055 0.94174 0.99442 0.94313 1.69318 1.31996 1.24737 1.27836 0.86341 0.80095 0.81442 0.78696 1.20348 1.19571 1.20913 1.24633 1.03437 0.76512 1.01232 0.91053 0.91895 0.91089 0.86000 0.91223 0.89971 0.92218 0.91010 0.93103 0.91203 0.89732 0.75260 0.91683 0.90316 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 8.84 36.01 0.32 -1.00 16 2 C -0.10 -1.44 9.84 -36.12 -0.36 -1.80 16 3 C -0.16 -2.77 5.25 -102.85 -0.54 -3.31 16 4 C -0.10 -1.46 4.92 -27.88 -0.14 -1.60 16 5 C -0.15 -2.26 8.83 37.16 0.33 -1.93 16 6 C 0.56 12.16 7.98 -12.67 -0.10 12.06 16 7 O -0.57 -13.90 16.95 5.26 0.09 -13.81 16 8 N -0.62 -13.58 3.61 -179.72 -0.65 -14.23 16 9 C 0.11 2.45 8.23 -2.97 -0.02 2.43 16 10 C 0.24 5.69 1.44 -90.86 -0.13 5.56 16 11 O -0.57 -14.67 13.48 -35.23 -0.48 -15.14 16 12 C -0.54 -13.37 8.62 -34.44 -0.30 -13.67 16 13 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 15 N -0.90 -22.35 11.09 55.43 0.61 -21.73 16 16 Si 0.91 19.30 29.54 -169.99 -5.02 14.28 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 C 0.06 1.37 5.49 -2.99 -0.02 1.35 16 21 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.69 7.42 -51.93 -0.39 0.30 16 24 H 0.12 1.90 7.49 -52.49 -0.39 1.51 16 25 H 0.07 0.86 6.32 -51.93 -0.33 0.53 16 26 H 0.08 1.32 5.25 -51.93 -0.27 1.05 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.30 6.50 -51.93 -0.34 0.96 16 29 H 0.05 0.68 7.86 -51.93 -0.41 0.28 16 30 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 31 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 32 H 0.39 10.07 6.46 45.56 0.29 10.36 16 33 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 34 H 0.08 1.62 8.02 -51.93 -0.42 1.20 16 35 H 0.09 1.80 4.01 -51.93 -0.21 1.59 16 LS Contribution 286.61 15.07 4.32 4.32 Total: -1.00 -28.19 286.61 -6.27 -34.46 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.09 Total: 12.08 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -1.05 Total: -0.22 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.03 Total: -35.96 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.39 Total: -28.95 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.19 -6.27 -34.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321051013.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.878 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds