Wall clock time and date at job start Sun Mar 29 2020 22:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00038 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.48142 * 127.83454 * 359.68023 * 13 11 10 15 15 C 1.54798 * 104.41963 * 140.36984 * 14 13 11 16 16 H 1.08990 * 118.10081 * 163.68992 * 15 14 13 17 17 C 1.53006 * 118.26342 * 320.85837 * 15 14 13 18 18 C 1.52998 * 60.55823 * 91.40138 * 17 15 14 19 19 C 1.53000 * 120.26354 * 111.47404 * 18 17 15 20 20 O 1.42897 * 109.47091 * 111.80081 * 19 18 17 21 21 C 1.48145 * 127.83844 * 180.02562 * 13 11 10 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.09006 * 110.41022 * 259.19878 * 14 13 11 28 28 H 1.09002 * 110.41050 * 21.63429 * 14 13 11 29 29 H 1.08998 * 117.44215 * 343.74748 * 17 15 14 30 30 H 1.08998 * 117.43738 * 199.05406 * 17 15 14 31 31 H 1.09002 * 109.47380 * 231.80238 * 19 18 17 32 32 H 1.09001 * 109.47317 * 351.80080 * 19 18 17 33 33 H 0.96697 * 114.00175 * 180.02562 * 20 19 18 34 34 H 1.08996 * 110.40713 * 338.36661 * 21 13 11 35 35 H 1.09001 * 110.40664 * 100.80594 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2787 -4.9672 0.0011 13 7 2.1654 -6.1344 0.0018 14 6 3.6330 -6.3365 -0.0046 15 6 3.8620 -7.5298 0.9546 16 1 4.8222 -8.0438 0.9143 17 6 3.0169 -7.6086 2.2276 18 6 2.5257 -8.3011 0.9549 19 6 2.4760 -9.8284 0.8781 20 8 1.1143 -10.2588 0.8298 21 6 1.6065 -7.5064 0.0020 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 3.9787 -6.5813 -1.0089 28 1 4.1409 -5.4463 0.3667 29 1 2.4951 -6.7044 2.5409 30 1 3.3832 -8.2425 3.0351 31 1 2.9953 -10.1642 -0.0195 32 1 2.9601 -10.2523 1.7579 33 1 1.0066 -11.2185 0.7805 34 1 0.5835 -7.5000 0.3781 35 1 1.6409 -7.9309 -1.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326009184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:47 Heat of formation + Delta-G solvation = -54.369494 kcal Electronic energy + Delta-G solvation = -16933.478715 eV Core-core repulsion = 14125.492635 eV Total energy + Delta-G solvation = -2807.986080 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.48839 -38.15610 -36.57618 -33.45050 -33.30169 -30.95266 -28.95975 -26.89739 -26.30950 -24.87473 -21.56129 -20.89903 -19.26441 -18.61726 -17.47496 -16.92308 -16.21641 -15.73247 -15.30010 -14.64291 -14.57095 -14.32977 -13.62629 -13.39908 -13.12897 -12.83169 -12.20525 -12.12431 -11.94448 -11.72733 -11.36608 -11.07452 -10.92964 -10.62152 -10.54645 -10.17082 -9.93771 -9.65175 -9.60839 -9.15796 -8.98988 -8.50073 -8.29860 -5.93975 -3.98392 3.23420 3.24547 3.26274 3.34110 3.41180 3.44596 3.93087 4.29620 4.48890 4.60666 4.66019 4.87588 5.06823 5.13358 5.30664 5.39094 5.40972 5.49950 5.60802 5.68573 5.77347 5.82813 6.02169 6.05595 6.23202 6.25277 6.49635 6.92124 7.37851 7.76938 7.88522 7.92136 8.09540 8.40486 8.76852 9.10199 9.65042 11.17089 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.052531 B = 0.004572 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.888814 B = 6123.269738 C = 6436.605314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.123 4.123 11 C 0.533 3.467 12 O -0.530 6.530 13 N -0.639 5.639 14 C 0.129 3.871 15 C -0.168 4.168 16 H 0.125 0.875 17 C -0.131 4.131 18 C -0.156 4.156 19 C 0.128 3.872 20 O -0.566 6.566 21 C 0.147 3.853 22 H 0.260 0.740 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.379 0.621 34 H 0.085 0.915 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.160 -20.384 1.670 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.163 4.163 11 C 0.324 3.676 12 O -0.405 6.405 13 N -0.376 5.376 14 C 0.006 3.994 15 C -0.187 4.187 16 H 0.142 0.858 17 C -0.168 4.168 18 C -0.157 4.157 19 C 0.050 3.950 20 O -0.371 6.371 21 C 0.024 3.976 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.225 0.775 34 H 0.104 0.896 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.148 -19.466 1.673 21.573 hybrid contribution 0.730 0.160 -0.029 0.748 sum 9.878 -19.306 1.643 21.748 Atomic orbital electron populations 1.70013 1.06064 1.26456 1.50273 1.25028 0.94820 0.99231 0.95318 0.86533 0.79995 0.83837 0.77579 1.19745 1.21020 1.21013 1.21247 0.92946 0.90951 1.51272 0.92546 1.18927 0.93204 0.89365 0.98676 1.21851 1.00667 0.91414 1.02370 1.21318 0.88058 0.84058 0.74145 1.90687 1.14252 1.86722 1.48807 1.49202 1.07128 1.05536 1.75731 1.21893 0.81964 0.97504 0.98084 1.23836 0.95019 0.99579 1.00239 0.85756 1.22974 1.00916 1.02417 0.90456 1.22600 0.98330 0.93213 1.01549 1.21327 0.83260 0.90873 0.99542 1.86551 1.25693 1.27409 1.97438 1.21438 0.98080 0.80837 0.97226 0.93006 0.95784 0.95791 0.90284 0.90291 0.90438 0.89349 0.88432 0.87971 0.93157 0.93298 0.77456 0.89636 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.82 13.29 55.43 0.74 -27.08 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.53 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.12 -2.62 4.61 -27.89 -0.13 -2.75 16 11 C 0.53 11.17 7.91 -10.99 -0.09 11.08 16 12 O -0.53 -13.48 16.25 5.55 0.09 -13.39 16 13 N -0.64 -10.32 2.89 -169.04 -0.49 -10.81 16 14 C 0.13 1.51 6.85 -2.19 -0.02 1.49 16 15 C -0.17 -1.62 7.09 -88.99 -0.63 -2.25 16 16 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.13 -1.43 9.67 -26.73 -0.26 -1.69 16 18 C -0.16 -1.74 2.81 -153.09 -0.43 -2.17 16 19 C 0.13 1.08 7.39 37.16 0.27 1.36 16 20 O -0.57 -5.46 13.29 -35.23 -0.47 -5.93 16 21 C 0.15 2.15 6.31 -2.39 -0.02 2.13 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 24 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 25 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 26 H 0.08 1.54 7.96 -51.93 -0.41 1.13 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.00 7.30 -51.93 -0.38 0.62 16 29 H 0.10 1.32 8.00 -51.93 -0.42 0.91 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.33 8.06 -51.93 -0.42 -0.08 16 33 H 0.38 1.71 9.12 45.56 0.42 2.12 16 34 H 0.09 1.48 7.88 -51.93 -0.41 1.07 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 297.49 15.07 4.48 4.48 Total: -1.00 -36.07 297.49 -7.03 -43.10 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.54 Total: -1.41 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.82 Total: -5.80 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.25 Total: -37.89 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.38 Total: -19.32 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -36.07 -7.03 -43.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326009184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.274 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds