Wall clock time and date at job start Sun Mar 29 2020 22:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99892 * 2 1 4 4 H 1.48497 * 109.46981 * 269.99241 * 3 2 1 5 5 H 1.48501 * 109.47436 * 29.99744 * 3 2 1 6 6 H 1.48501 * 109.46852 * 149.99473 * 3 2 1 7 7 C 1.37877 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99816 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00153 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47231 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46885 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00620 * 0.02562 * 11 10 9 13 13 N 1.34785 * 119.99865 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00219 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.33824 * 84.48637 * 14 13 11 16 16 C 1.53232 * 109.37855 * 183.47556 * 15 14 13 17 17 C 1.51270 * 108.69741 * 305.66359 * 16 15 14 18 18 O 1.20752 * 120.85299 * 231.23272 * 17 16 15 19 19 C 1.51271 * 118.29945 * 51.25119 * 17 16 15 20 20 C 1.52953 * 109.41448 * 205.00236 * 14 13 11 21 21 H 0.96996 * 120.00135 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47636 * 59.99404 * 9 7 2 23 23 H 1.09008 * 109.46994 * 299.99814 * 9 7 2 24 24 H 1.09001 * 109.46885 * 59.99607 * 10 9 7 25 25 H 1.09002 * 109.46583 * 299.99445 * 10 9 7 26 26 H 0.96996 * 119.99716 * 0.02562 * 13 11 10 27 27 H 1.09005 * 109.41093 * 324.86183 * 14 13 11 28 28 H 1.09003 * 109.33509 * 63.60317 * 15 14 13 29 29 H 1.08998 * 109.65336 * 303.54762 * 15 14 13 30 30 H 1.09002 * 109.62686 * 185.85253 * 16 15 14 31 31 H 1.09001 * 109.62522 * 65.47590 * 16 15 14 32 32 H 1.08996 * 109.62720 * 68.36253 * 19 17 16 33 33 H 1.08998 * 109.62860 * 188.74644 * 19 17 16 34 34 H 1.08997 * 109.48509 * 56.38103 * 20 14 13 35 35 H 1.09004 * 109.49182 * 296.35014 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5284 -2.6366 0.0009 12 8 6.1349 -1.5863 0.0015 13 7 6.2024 -3.8038 0.0014 14 6 7.6674 -3.8039 0.0019 15 6 8.1735 -3.6649 1.4391 16 6 9.7033 -3.5776 1.4331 17 6 10.2544 -4.7724 0.6869 18 8 11.1107 -5.4681 1.1777 19 6 9.7056 -5.0734 -0.6903 20 6 8.1760 -5.1113 -0.6075 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8910 23 1 3.8752 -0.6805 -0.8889 24 1 3.6584 -3.1502 -0.8892 25 1 3.6578 -3.1505 0.8908 26 1 5.7174 -4.6438 0.0013 27 1 8.0299 -2.9632 -0.5898 28 1 7.8613 -4.5346 2.0173 29 1 7.7595 -2.7620 1.8879 30 1 10.0744 -3.5831 2.4580 31 1 10.0157 -2.6593 0.9357 32 1 10.0152 -4.2937 -1.3862 33 1 10.0807 -6.0383 -1.0311 34 1 7.7606 -5.2320 -1.6079 35 1 7.8665 -5.9487 0.0180 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332749283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:35 Heat of formation + Delta-G solvation = -126.002205 kcal Electronic energy + Delta-G solvation = -16736.587528 eV Core-core repulsion = 13925.495221 eV Total energy + Delta-G solvation = -2811.092307 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.28251 -40.36516 -37.78816 -35.50751 -34.38051 -33.19878 -32.27336 -29.32727 -27.45260 -24.31082 -23.54980 -22.21885 -21.21085 -20.15839 -19.14514 -17.62932 -17.46190 -16.62652 -16.42152 -16.39024 -16.21231 -15.73116 -15.08948 -14.88634 -14.57515 -14.36206 -14.18735 -13.43063 -13.37708 -13.17576 -12.88368 -12.74708 -12.46357 -12.21064 -12.07257 -11.94139 -11.74778 -11.64544 -11.37557 -10.76621 -10.68905 -10.47283 -10.00729 -8.30080 -6.32902 0.89424 1.34682 1.36859 1.51434 1.74471 2.27810 2.36371 3.05929 3.09661 3.61794 3.70983 3.99474 4.04422 4.11270 4.26984 4.35147 4.41828 4.44997 4.54510 4.59636 4.76454 4.96458 4.98541 5.00656 5.04106 5.22170 5.27108 5.37357 5.48495 5.58641 5.64076 6.25300 6.44748 6.65836 6.74241 7.32673 7.38048 8.85667 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.056243 B = 0.004305 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.718864 B = 6501.820823 C = 6748.842620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.529 4.529 8 H 0.049 0.951 9 C 0.005 3.995 10 C -0.119 4.119 11 C 0.517 3.483 12 O -0.582 6.582 13 N -0.715 5.715 14 C 0.136 3.864 15 C -0.121 4.121 16 C -0.165 4.165 17 C 0.368 3.632 18 O -0.500 6.500 19 C -0.160 4.160 20 C -0.110 4.110 21 H 0.267 0.733 22 H 0.009 0.991 23 H 0.009 0.991 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.417 0.583 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.053 -11.728 -1.235 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.033 4.033 10 C -0.159 4.159 11 C 0.305 3.695 12 O -0.462 6.462 13 N -0.368 5.368 14 C 0.031 3.969 15 C -0.159 4.159 16 C -0.203 4.203 17 C 0.246 3.754 18 O -0.376 6.376 19 C -0.198 4.198 20 C -0.148 4.148 21 H 0.076 0.924 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.254 0.746 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 19.775 -11.251 -0.980 22.773 hybrid contribution -0.429 0.712 0.156 0.846 sum 19.346 -10.540 -0.824 22.046 Atomic orbital electron populations 1.70027 1.07842 1.28074 1.52635 1.25822 0.95479 1.02913 0.94320 0.85819 0.79239 0.79443 0.79148 1.19322 1.20556 1.18454 1.21465 0.91429 0.93645 1.50161 0.93225 1.19222 0.93751 0.94012 0.96361 1.21503 0.89670 0.99687 1.05000 1.21110 0.90798 0.83531 0.74044 1.90639 1.71228 1.33243 1.51095 1.45937 1.06914 1.08560 1.75351 1.21102 0.79698 0.99902 0.96201 1.21854 0.93509 1.03055 0.97528 1.22258 0.96362 0.99049 1.02629 1.25298 0.77862 0.83030 0.89206 1.90409 1.28346 1.48733 1.70103 1.22264 0.96313 1.06003 0.95221 1.21710 0.93519 0.95978 1.03603 0.92428 0.97240 0.97235 0.87911 0.88130 0.74622 0.90261 0.90433 0.92165 0.89268 0.87022 0.86289 0.87818 0.88160 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.79 13.96 21.45 0.30 -58.50 16 2 C 0.01 0.72 5.47 84.65 0.46 1.18 16 3 Si 0.94 46.17 27.47 68.60 1.88 48.05 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.26 -12.66 6.54 99.48 0.65 -12.01 16 7 C -0.53 -30.04 9.66 25.60 0.25 -29.79 16 8 H 0.05 2.97 7.99 -2.91 -0.02 2.94 16 9 C 0.00 0.22 3.33 29.85 0.10 0.32 16 10 C -0.12 -4.20 5.64 29.85 0.17 -4.04 16 11 C 0.52 16.48 7.79 87.65 0.68 17.16 16 12 O -0.58 -23.56 15.65 -3.02 -0.05 -23.61 16 13 N -0.72 -14.70 5.07 -442.59 -2.24 -16.95 16 14 C 0.14 2.34 2.34 44.98 0.11 2.45 16 15 C -0.12 -2.15 5.51 30.67 0.17 -1.98 16 16 C -0.16 -2.60 6.16 30.11 0.19 -2.41 16 17 C 0.37 6.15 6.73 29.46 0.20 6.35 16 18 O -0.50 -12.24 17.89 -1.43 -0.03 -12.27 16 19 C -0.16 -1.70 6.17 30.11 0.19 -1.51 16 20 C -0.11 -1.13 5.41 30.66 0.17 -0.97 16 21 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 22 H 0.01 0.47 7.16 -2.39 -0.02 0.45 16 23 H 0.01 0.46 7.53 -2.38 -0.02 0.45 16 24 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 25 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 26 H 0.42 5.87 8.60 -92.71 -0.80 5.07 16 27 H 0.08 1.64 7.58 -2.38 -0.02 1.63 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -75.17 293.57 2.76 -72.40 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 0.23 Total: 4.10 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 2.67 Total: -13.24 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -1.95 Total: -75.44 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.07 Total: -35.88 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.88 Total: 48.05 kcal Total: -75.17 2.76 -72.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332749283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.598 kcal (2) G-P(sol) polarization free energy of solvation -75.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds