Wall clock time and date at job start Sun Mar 29 2020 22:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99557 * 2 1 4 4 H 1.48496 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47112 * 300.00065 * 3 2 1 6 6 H 1.48497 * 109.47364 * 59.99711 * 3 2 1 7 7 C 1.37874 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99761 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47030 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00306 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00376 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00426 * 180.02562 * 13 11 10 15 15 H 1.09002 * 115.55910 * 9.41626 * 14 13 11 16 16 C 1.53123 * 117.54682 * 223.62441 * 14 13 11 17 17 C 1.52451 * 59.85590 * 252.56562 * 16 14 13 18 18 C 1.53267 * 128.58431 * 117.60489 * 17 16 14 19 19 C 1.53888 * 86.88300 * 114.93795 * 18 17 16 20 20 O 1.42896 * 113.58914 * 270.39275 * 19 18 17 21 21 C 1.53259 * 128.58593 * 242.39353 * 17 16 14 22 22 H 0.96993 * 120.00529 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47558 * 60.00326 * 9 7 2 24 24 H 1.09002 * 109.46830 * 299.99532 * 9 7 2 25 25 H 1.09002 * 109.46733 * 60.00258 * 10 9 7 26 26 H 1.08994 * 109.47262 * 299.99494 * 10 9 7 27 27 H 0.97003 * 119.99654 * 359.97438 * 13 11 10 28 28 H 1.09001 * 117.51244 * 0.02562 * 16 14 13 29 29 H 1.08997 * 117.51260 * 145.11426 * 16 14 13 30 30 H 1.09002 * 113.64391 * 229.43864 * 18 17 16 31 31 H 1.09007 * 113.63996 * 0.44063 * 18 17 16 32 32 H 1.09004 * 113.65799 * 139.58231 * 19 18 17 33 33 H 0.96700 * 113.99777 * 277.66638 * 20 19 18 34 34 H 1.09004 * 113.64217 * 359.55989 * 21 17 16 35 35 H 1.08994 * 113.64608 * 130.47024 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2456 -3.6619 -0.0018 11 6 1.4922 -4.9671 -0.0012 12 8 0.2793 -4.9672 -0.0003 13 7 2.1661 -6.1343 -0.0016 14 6 1.4337 -7.4030 -0.0016 15 1 0.3584 -7.3253 -0.1621 16 6 1.9312 -8.5078 0.9348 17 6 2.1440 -8.6263 -0.5701 18 6 3.4639 -8.6903 -1.3467 19 6 3.0592 -10.1187 -1.7516 20 8 3.5035 -11.1206 -0.8348 21 6 1.5984 -9.6873 -1.5321 22 1 -0.4850 0.8399 -0.0004 23 1 0.6243 -2.5567 -0.8903 24 1 0.6250 -2.5570 0.8898 25 1 2.8729 -3.6045 0.8878 26 1 2.8715 -3.6038 -0.8923 27 1 3.1361 -6.1342 -0.0027 28 1 2.8034 -8.2904 1.5513 29 1 1.1830 -9.1566 1.3901 30 1 3.5120 -7.9952 -2.1850 31 1 4.3479 -8.6502 -0.7102 32 1 3.2910 -10.3617 -2.7887 33 1 4.4209 -11.3961 -0.9675 34 1 0.9870 -10.4466 -1.0443 35 1 1.1260 -9.2698 -2.4211 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343399214.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:25 Heat of formation + Delta-G solvation = -75.053652 kcal Electronic energy + Delta-G solvation = -16465.794589 eV Core-core repulsion = 13656.911577 eV Total energy + Delta-G solvation = -2808.883012 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.22220 -40.12416 -37.22668 -35.56749 -34.80897 -33.18739 -32.16875 -27.79456 -26.77080 -24.29029 -23.51243 -22.40036 -21.28831 -19.67727 -18.85624 -18.15406 -17.56877 -17.11076 -16.46347 -16.42914 -15.98914 -15.51367 -14.98615 -14.49731 -14.26223 -14.08354 -13.92440 -13.48296 -13.23606 -12.92979 -12.85439 -12.50710 -12.44151 -12.01203 -11.93344 -11.64718 -11.29231 -11.26243 -11.01003 -10.79067 -10.68390 -10.57555 -9.58210 -8.17923 -6.32163 1.42684 1.44242 1.57566 1.63576 2.11667 2.44115 2.82452 3.15141 3.25375 3.52988 3.64765 3.74920 3.77751 3.99872 4.12421 4.46987 4.50196 4.55187 4.66085 4.78624 4.82768 4.87684 4.91792 5.08254 5.10660 5.19990 5.30693 5.48224 5.56749 5.62726 5.85549 6.17446 6.59151 6.86593 6.96347 7.33237 7.38352 8.95064 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.059002 B = 0.003809 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.442697 B = 7349.578450 C = 7559.811269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.118 4.118 11 C 0.514 3.486 12 O -0.590 6.590 13 N -0.686 5.686 14 C 0.068 3.932 15 H 0.106 0.894 16 C -0.147 4.147 17 C -0.153 4.153 18 C -0.126 4.126 19 C 0.093 3.907 20 O -0.568 6.568 21 C -0.102 4.102 22 H 0.263 0.737 23 H -0.018 1.018 24 H -0.018 1.018 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.415 0.585 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.398 0.602 34 H 0.071 0.929 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.185 -21.170 -3.238 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.003 3.997 10 C -0.157 4.157 11 C 0.303 3.697 12 O -0.470 6.470 13 N -0.337 5.337 14 C -0.038 4.038 15 H 0.124 0.876 16 C -0.185 4.185 17 C -0.154 4.154 18 C -0.164 4.164 19 C 0.034 3.966 20 O -0.376 6.376 21 C -0.139 4.139 22 H 0.071 0.929 23 H 0.001 0.999 24 H 0.000 1.000 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.253 0.747 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.248 0.752 34 H 0.090 0.910 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.594 -20.995 -3.017 23.709 hybrid contribution 0.514 0.958 -0.011 1.087 sum 11.108 -20.037 -3.028 23.109 Atomic orbital electron populations 1.70187 1.08353 1.27761 1.51548 1.26163 0.95737 1.04031 0.94647 0.85248 0.79311 0.77985 0.77529 1.17519 1.20621 1.20678 1.21744 0.94040 0.91539 1.50659 0.90486 1.18703 0.93742 0.92516 0.94719 1.21637 0.99304 0.89807 1.04969 1.21396 0.87851 0.86613 0.73863 1.90649 1.16801 1.88285 1.51226 1.45207 1.10287 1.03572 1.74630 1.21515 0.96254 0.79915 1.06135 0.87596 1.23331 1.03579 0.99933 0.91651 1.22824 0.99735 0.97152 0.95681 1.23207 0.94998 0.98365 0.99801 1.22510 0.94685 0.86675 0.92771 1.86442 1.35032 1.57748 1.58372 1.22718 0.96391 0.95961 0.98835 0.92860 0.99910 1.00000 0.87679 0.87528 0.74749 0.87401 0.87771 0.88179 0.89791 0.88976 0.75179 0.90998 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.04 13.29 21.45 0.28 -59.75 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 3 Si 0.98 44.43 29.54 68.60 2.03 46.46 16 4 H -0.25 -10.52 7.11 99.48 0.71 -9.82 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.02 9.11 25.60 0.23 -30.79 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 9 C 0.04 2.30 4.26 29.85 0.13 2.43 16 10 C -0.12 -4.75 5.64 29.85 0.17 -4.59 16 11 C 0.51 20.44 7.83 87.66 0.69 21.13 16 12 O -0.59 -29.93 15.55 -3.06 -0.05 -29.98 16 13 N -0.69 -19.43 5.55 -443.19 -2.46 -21.89 16 14 C 0.07 1.82 6.43 44.85 0.29 2.11 16 15 H 0.11 3.47 7.40 -2.39 -0.02 3.45 16 16 C -0.15 -3.10 10.46 30.45 0.32 -2.78 16 17 C -0.15 -2.99 2.95 -52.37 -0.15 -3.14 16 18 C -0.13 -1.79 7.91 30.98 0.25 -1.55 16 19 C 0.09 1.22 5.27 31.19 0.16 1.38 16 20 O -0.57 -7.99 13.59 -148.98 -2.03 -10.01 16 21 C -0.10 -1.74 7.93 30.98 0.25 -1.50 16 22 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 23 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 24 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 25 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 26 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 27 H 0.42 8.72 8.83 -92.71 -0.82 7.90 16 28 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.40 1.93 9.12 -74.06 -0.68 1.26 16 34 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -79.35 302.96 0.17 -79.19 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -0.40 Total: 13.31 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 2.78 Total: -17.33 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -2.17 Total: -81.64 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -2.07 Total: -39.99 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -79.35 0.17 -79.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343399214.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.131 kcal (2) G-P(sol) polarization free energy of solvation -79.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds