Wall clock time and date at job start Sun Mar 29 2020 22:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47393 * 2 1 4 4 N 1.46507 * 109.46858 * 119.99702 * 2 1 3 5 5 C 1.46500 * 119.99484 * 121.54461 * 4 2 1 6 6 C 1.50703 * 109.47326 * 269.99990 * 5 4 2 7 7 H 1.07993 * 119.99686 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00055 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00190 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99823 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47328 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47372 * 119.99866 * 10 8 6 13 13 H 1.48497 * 109.47228 * 239.99645 * 10 8 6 14 14 C 1.34775 * 120.00298 * 301.54487 * 4 2 1 15 15 O 1.21274 * 119.99799 * 4.68270 * 14 4 2 16 16 C 1.50696 * 119.99766 * 184.68421 * 14 4 2 17 17 C 1.53841 * 113.66026 * 105.54807 * 16 14 4 18 18 C 1.51768 * 86.68966 * 89.80688 * 17 16 14 19 19 O 1.20761 * 135.75125 * 205.15899 * 18 17 16 20 20 C 1.51582 * 88.46979 * 25.07957 * 18 17 16 21 21 H 1.09004 * 109.47088 * 306.68149 * 1 2 3 22 22 H 1.09004 * 109.47107 * 66.67704 * 1 2 3 23 23 H 1.08997 * 109.47537 * 186.68209 * 1 2 3 24 24 H 1.08993 * 109.47504 * 239.99868 * 2 1 3 25 25 H 1.09001 * 109.47193 * 175.73004 * 3 2 1 26 26 H 1.08999 * 109.47551 * 295.73984 * 3 2 1 27 27 H 1.09004 * 109.46711 * 55.73523 * 3 2 1 28 28 H 1.08999 * 109.47572 * 29.99970 * 5 4 2 29 29 H 1.09002 * 109.46864 * 149.99875 * 5 4 2 30 30 H 0.96994 * 119.99982 * 179.97438 * 9 8 6 31 31 H 1.09004 * 112.88779 * 334.21311 * 16 14 4 32 32 H 1.08998 * 113.66765 * 204.24189 * 17 16 14 33 33 H 1.09001 * 113.66106 * 335.31031 * 17 16 14 34 34 H 1.08993 * 113.66964 * 220.45784 * 20 18 17 35 35 H 1.09003 * 113.66819 * 89.38719 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.8882 -1.8617 1.0621 6 6 2.0449 -3.1088 0.9940 7 1 0.9686 -3.0362 1.0451 8 6 2.6474 -4.3423 0.8664 9 7 3.9581 -4.4307 0.8037 10 14 1.6020 -5.8881 0.7813 11 1 0.1662 -5.5202 0.8720 12 1 1.8543 -6.5861 -0.5050 13 1 1.9546 -6.7868 1.9096 14 6 1.6672 -0.2486 2.4201 15 8 0.8800 0.6673 2.5312 16 6 2.2528 -0.8924 3.6503 17 6 3.3222 -0.0334 4.3470 18 6 2.1866 0.5689 5.1540 19 8 1.9954 1.6104 5.7344 20 6 1.3961 -0.7020 4.9139 21 1 -0.3633 0.6139 0.8242 22 1 -0.3633 0.4069 -0.9437 23 1 -0.3634 -1.0206 0.1196 24 1 1.8933 -0.5138 -0.8899 25 1 3.1273 1.4434 0.0765 26 1 1.7404 1.9338 -0.9257 27 1 1.6156 1.9778 0.8494 28 1 3.4794 -1.7727 0.1507 29 1 3.5542 -1.9200 1.9230 30 1 4.3820 -5.2985 0.7143 31 1 2.5616 -1.9242 3.4827 32 1 4.0258 -0.6116 4.9459 33 1 3.8133 0.6776 3.6826 34 1 0.3407 -0.5279 4.7048 35 1 1.5584 -1.4681 5.6721 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542478140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:13 Heat of formation + Delta-G solvation = -68.818982 kcal Electronic energy + Delta-G solvation = -17834.844475 eV Core-core repulsion = 15026.231819 eV Total energy + Delta-G solvation = -2808.612657 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.82454 -40.03894 -37.46083 -36.58339 -34.93868 -33.10425 -28.91419 -28.04056 -27.09491 -26.36547 -24.70441 -22.72171 -20.71634 -18.98686 -18.52406 -17.85955 -17.31300 -16.60929 -16.50499 -16.31721 -16.05268 -15.60905 -14.90706 -14.49609 -14.38464 -14.00950 -13.66204 -13.44854 -13.16964 -13.01654 -12.87305 -12.70134 -12.67065 -12.39580 -12.24869 -12.13271 -12.06733 -11.67758 -11.57638 -10.61170 -10.43577 -10.36081 -9.42489 -8.17380 -6.31157 0.92919 1.41916 1.46729 1.55476 1.67421 2.27803 2.45807 2.86541 3.13259 3.51165 3.64418 3.81084 4.10573 4.20937 4.26291 4.39653 4.55110 4.60721 4.71316 4.76838 4.78155 4.87924 4.92990 4.99499 5.04259 5.07714 5.23295 5.30598 5.41641 5.71823 5.95242 6.09866 6.47626 6.61742 6.86782 7.33561 7.44914 8.87763 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.020641 B = 0.008890 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.202083 B = 3148.725603 C = 3897.604195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 C -0.153 4.153 4 N -0.591 5.591 5 C 0.249 3.751 6 C -0.542 4.542 7 H 0.050 0.950 8 C 0.026 3.974 9 N -0.916 5.916 10 Si 0.951 3.049 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.276 1.276 14 C 0.524 3.476 15 O -0.585 6.585 16 C -0.138 4.138 17 C -0.156 4.156 18 C 0.366 3.634 19 O -0.472 6.472 20 C -0.159 4.159 21 H 0.059 0.941 22 H 0.079 0.921 23 H 0.037 0.963 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.019 0.981 29 H 0.042 0.958 30 H 0.268 0.732 31 H 0.128 0.872 32 H 0.164 0.836 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 3.929 2.708 4.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.032 3.968 3 C -0.211 4.211 4 N -0.320 5.320 5 C 0.128 3.872 6 C -0.581 4.581 7 H 0.068 0.932 8 C -0.175 4.175 9 N -0.556 5.556 10 Si 0.777 3.223 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.201 1.201 14 C 0.313 3.687 15 O -0.468 6.468 16 C -0.159 4.159 17 C -0.194 4.194 18 C 0.243 3.757 19 O -0.347 6.347 20 C -0.197 4.197 21 H 0.078 0.922 22 H 0.098 0.902 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.181 0.819 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.124 4.815 3.000 5.783 hybrid contribution -0.410 -1.133 -0.497 1.303 sum -1.533 3.682 2.503 4.709 Atomic orbital electron populations 1.22080 0.95085 1.01246 1.02788 1.21088 0.94790 0.93256 0.87632 1.22066 1.00663 0.95410 1.02916 1.48315 1.48838 1.29824 1.05056 1.19208 0.89071 0.81271 0.97647 1.21686 0.93357 0.91917 1.51144 0.93200 1.25550 0.95852 1.01531 0.94524 1.69996 1.09511 1.25883 1.50182 0.85608 0.79018 0.79822 0.77811 1.19906 1.20813 1.20104 1.20313 0.80852 0.82345 0.85224 1.90563 1.36720 1.32202 1.87286 1.22153 0.98850 1.02996 0.91876 1.24026 0.97969 0.98928 0.98503 1.26108 0.91192 0.86443 0.71961 1.90349 1.79266 1.27456 1.37584 1.23979 1.00978 0.97936 0.96767 0.92181 0.90248 0.94332 0.89778 0.92920 0.89722 0.93058 0.96292 0.94007 0.92332 0.85436 0.81902 0.89423 0.89702 0.82174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 8.96 71.98 0.64 -4.68 16 2 C 0.14 4.84 3.27 44.99 0.15 4.99 16 3 C -0.15 -4.75 9.08 71.98 0.65 -4.10 16 4 N -0.59 -23.56 2.41 -802.16 -1.93 -25.49 16 5 C 0.25 11.08 4.77 85.63 0.41 11.48 16 6 C -0.54 -26.66 9.24 25.60 0.24 -26.43 16 7 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 8 C 0.03 1.30 5.46 84.65 0.46 1.76 16 9 N -0.92 -47.66 13.29 21.45 0.28 -47.37 16 10 Si 0.95 40.06 29.54 68.60 2.03 42.09 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 14 C 0.52 20.40 6.42 87.66 0.56 20.96 16 15 O -0.59 -24.88 12.14 -3.01 -0.04 -24.92 16 16 C -0.14 -4.40 3.43 -11.03 -0.04 -4.44 16 17 C -0.16 -4.11 7.65 30.47 0.23 -3.88 16 18 C 0.37 11.34 8.42 29.67 0.25 11.59 16 19 O -0.47 -17.75 17.99 -1.45 -0.03 -17.78 16 20 C -0.16 -4.37 7.41 30.41 0.23 -4.14 16 21 H 0.06 2.26 6.16 -2.38 -0.01 2.25 16 22 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.08 2.98 7.81 -2.39 -0.02 2.96 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.05 1.79 6.56 -2.38 -0.02 1.78 16 28 H 0.02 0.91 7.93 -2.39 -0.02 0.89 16 29 H 0.04 1.86 6.24 -2.39 -0.01 1.84 16 30 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 31 H 0.13 4.30 6.33 -2.39 -0.02 4.29 16 32 H 0.16 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.09 2.41 8.09 -2.39 -0.02 2.39 16 34 H 0.08 2.61 7.82 -2.39 -0.02 2.59 16 35 H 0.16 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -60.69 292.72 5.18 -55.51 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.07 Total: 14.85 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 3.79 Total: 3.11 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -1.65 Total: -72.87 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.06 Total: -42.69 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -60.69 5.18 -55.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542478140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.305 kcal (2) G-P(sol) polarization free energy of solvation -60.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds