Wall clock time and date at job start Sun Mar 29 2020 22:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00059 * 2 1 4 4 H 1.08995 * 109.99268 * 358.91261 * 3 2 1 5 5 O 1.43749 * 109.87907 * 237.82652 * 3 2 1 6 6 C 1.44379 * 106.97477 * 214.06533 * 5 3 2 7 7 C 1.54991 * 103.49293 * 40.05898 * 6 5 3 8 8 C 1.54106 * 109.87652 * 119.99897 * 3 2 1 9 9 H 1.09000 * 110.60382 * 2.72389 * 8 3 2 10 10 N 1.46496 * 110.48572 * 240.12719 * 8 3 2 11 11 C 1.34777 * 119.99867 * 158.77717 * 10 8 3 12 12 O 1.21279 * 120.00166 * 0.02562 * 11 10 8 13 13 C 1.50706 * 120.00142 * 180.02562 * 11 10 8 14 14 C 1.53002 * 109.47305 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.46919 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47035 * 60.00183 * 19 17 15 21 21 H 1.48503 * 109.46845 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47237 * 299.99939 * 19 17 15 23 23 H 1.07998 * 120.00074 * 179.97438 * 1 2 3 24 24 H 1.08000 * 119.99531 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99531 * 179.97438 * 2 1 3 26 26 H 1.09007 * 110.61671 * 281.56194 * 6 5 3 27 27 H 1.08993 * 110.75121 * 158.63138 * 6 5 3 28 28 H 1.08998 * 110.90830 * 204.77515 * 7 6 5 29 29 H 1.09003 * 110.90480 * 81.17740 * 7 6 5 30 30 H 0.97004 * 120.00601 * 338.78326 * 10 8 3 31 31 H 1.09004 * 109.47043 * 60.00265 * 13 11 10 32 32 H 1.09000 * 109.46974 * 300.00347 * 13 11 10 33 33 H 1.09000 * 109.46497 * 60.00267 * 14 13 11 34 34 H 1.08999 * 109.46623 * 300.00331 * 14 13 11 35 35 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3630 2.1398 -0.0194 5 8 2.9313 1.3684 -1.1442 6 6 4.1113 2.0949 -0.7387 7 6 4.3852 1.5691 0.6934 8 6 2.9530 1.3965 1.2551 9 1 2.8816 0.4816 1.8433 10 7 2.5772 2.5570 2.0664 11 6 2.9029 2.5993 3.3735 12 8 3.5074 1.6769 3.8780 13 6 2.5158 3.7928 4.2083 14 6 3.0018 3.5897 5.6448 15 6 2.6142 4.7830 6.4796 16 1 2.0755 5.6042 6.0304 17 6 2.9482 4.8267 7.8167 18 7 3.6097 3.8294 8.3620 19 14 2.4683 6.3061 8.8513 20 1 0.9909 6.4559 8.8455 21 1 2.9399 6.1089 10.2456 22 1 3.0922 7.5292 8.2855 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5399 0.9354 -0.0004 25 1 1.8499 -0.9354 0.0004 26 1 3.9154 3.1671 -0.7229 27 1 4.9495 1.8687 -1.3976 28 1 4.9460 2.3003 1.2756 29 1 4.9090 0.6136 0.6633 30 1 2.0939 3.2949 1.6629 31 1 1.4314 3.9034 4.2034 32 1 2.9744 4.6904 3.7934 33 1 4.0862 3.4795 5.6493 34 1 2.5435 2.6920 6.0598 35 1 3.8592 3.0613 7.8247 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542584047.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:29 Heat of formation + Delta-G solvation = -102.627696 kcal Electronic energy + Delta-G solvation = -16826.351993 eV Core-core repulsion = 14016.273280 eV Total energy + Delta-G solvation = -2810.078713 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.46670 -39.99045 -36.04095 -35.65280 -34.81563 -33.05844 -31.66970 -29.13383 -27.13405 -24.34890 -23.93984 -22.41990 -21.59543 -20.74014 -19.03691 -18.19603 -17.65702 -17.42422 -16.59378 -16.17796 -16.06507 -15.60049 -15.21960 -14.95232 -14.46145 -14.14190 -14.12964 -13.75436 -13.39416 -13.14019 -12.65652 -12.40636 -12.20638 -12.14525 -12.07041 -12.03596 -11.86172 -11.06490 -10.85617 -10.69640 -10.62026 -10.54598 -10.10614 -8.69185 -6.41280 1.15349 1.54993 1.56660 1.64832 1.83240 2.04279 2.60485 2.97890 3.17287 3.44740 3.54061 3.79881 3.90675 3.96703 4.15922 4.18638 4.32096 4.38839 4.40748 4.67584 4.78039 4.79325 4.88377 4.93971 4.97380 5.26034 5.36019 5.36757 5.57782 5.64400 5.80455 5.93487 6.17318 6.45069 6.52124 7.20251 7.44832 8.70662 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.042200 B = 0.004385 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.346458 B = 6383.818771 C = 6577.452113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.180 4.180 3 C 0.109 3.891 4 H 0.093 0.907 5 O -0.379 6.379 6 C 0.050 3.950 7 C -0.166 4.166 8 C 0.115 3.885 9 H 0.080 0.920 10 N -0.709 5.709 11 C 0.515 3.485 12 O -0.585 6.585 13 C -0.113 4.113 14 C 0.026 3.974 15 C -0.619 4.619 16 H 0.068 0.932 17 C -0.045 4.045 18 N -0.940 5.940 19 Si 1.124 2.876 20 H -0.264 1.264 21 H -0.288 1.288 22 H -0.264 1.264 23 H 0.119 0.881 24 H 0.110 0.890 25 H 0.115 0.885 26 H 0.076 0.924 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.417 0.583 31 H 0.105 0.895 32 H 0.106 0.894 33 H -0.021 1.021 34 H -0.021 1.021 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.030 -1.663 -20.938 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.198 4.198 3 C 0.051 3.949 4 H 0.111 0.889 5 O -0.298 6.298 6 C -0.026 4.026 7 C -0.205 4.205 8 C 0.009 3.991 9 H 0.098 0.902 10 N -0.363 5.363 11 C 0.304 3.696 12 O -0.465 6.465 13 C -0.153 4.153 14 C -0.012 4.012 15 C -0.657 4.657 16 H 0.086 0.914 17 C -0.241 4.241 18 N -0.577 5.577 19 Si 0.944 3.056 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.189 1.189 23 H 0.137 0.863 24 H 0.128 0.872 25 H 0.133 0.867 26 H 0.094 0.906 27 H 0.132 0.868 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.254 0.746 31 H 0.123 0.877 32 H 0.124 0.876 33 H -0.002 1.002 34 H -0.003 1.003 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.567 -1.778 -19.309 19.921 hybrid contribution 0.179 -0.840 -1.180 1.459 sum -4.388 -2.617 -20.489 21.116 Atomic orbital electron populations 1.24152 0.95211 1.03637 0.96487 1.22853 0.96504 0.97301 1.03184 1.22009 0.91750 0.97344 0.83754 0.88905 1.88938 1.30979 1.76890 1.32990 1.23710 0.88245 0.96546 0.94118 1.23532 0.96321 1.03084 0.97536 1.22280 0.94590 0.89975 0.92254 0.90186 1.45922 1.59538 1.22193 1.08620 1.21285 0.77453 0.88381 0.82481 1.90656 1.42390 1.40258 1.73177 1.21526 1.03522 0.95595 0.94630 1.18865 0.94116 0.95535 0.92636 1.22504 1.40314 1.05490 0.97371 0.91416 1.27657 0.93614 1.04323 0.98551 1.70900 1.38334 1.08601 1.39898 0.82872 0.77230 0.71443 0.74045 1.18867 1.21418 1.18858 0.86304 0.87215 0.86724 0.90570 0.86789 0.90663 0.89636 0.74555 0.87669 0.87616 1.00230 1.00299 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 14.32 67.78 0.97 -1.53 16 2 C -0.18 -3.47 8.95 25.64 0.23 -3.24 16 3 C 0.11 2.18 3.57 30.22 0.11 2.29 16 4 H 0.09 1.54 7.27 -2.39 -0.02 1.53 16 5 O -0.38 -7.98 11.17 -148.98 -1.66 -9.65 16 6 C 0.05 0.86 7.72 72.66 0.56 1.42 16 7 C -0.17 -3.70 6.88 31.89 0.22 -3.49 16 8 C 0.11 2.82 2.96 45.98 0.14 2.95 16 9 H 0.08 2.39 7.22 -2.39 -0.02 2.37 16 10 N -0.71 -18.27 5.11 -437.85 -2.24 -20.51 16 11 C 0.52 19.26 7.82 87.66 0.69 19.94 16 12 O -0.59 -27.93 15.69 -3.03 -0.05 -27.98 16 13 C -0.11 -4.44 5.64 29.85 0.17 -4.27 16 14 C 0.03 1.43 3.57 29.85 0.11 1.54 16 15 C -0.62 -35.39 9.11 25.60 0.23 -35.16 16 16 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 17 C -0.04 -2.65 5.46 84.66 0.46 -2.18 16 18 N -0.94 -61.19 13.65 21.45 0.29 -60.90 16 19 Si 1.12 49.98 29.90 68.60 2.05 52.03 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 23 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 24 H 0.11 1.48 7.85 -2.91 -0.02 1.46 16 25 H 0.11 2.20 8.06 -2.91 -0.02 2.17 16 26 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.42 7.66 8.28 -92.71 -0.77 6.89 16 31 H 0.11 3.65 8.14 -2.38 -0.02 3.63 16 32 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 33 H -0.02 -1.27 7.96 -2.39 -0.02 -1.29 16 34 H -0.02 -1.31 7.97 -2.39 -0.02 -1.33 16 35 H 0.25 17.01 7.22 -92.71 -0.67 16.34 16 Total: -1.00 -76.82 299.25 2.68 -74.14 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.40 Total: 14.59 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 3.88 Total: -21.72 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -1.94 Total: -81.41 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.71 Total: -37.63 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -76.82 2.68 -74.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542584047.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.490 kcal (2) G-P(sol) polarization free energy of solvation -76.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds