Wall clock time and date at job start Sun Mar 29 2020 22:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.48627 * 110.99819 * 52.56288 * 11 10 9 13 13 C 1.55147 * 103.35693 * 159.17508 * 12 11 10 14 14 C 1.53660 * 102.67470 * 323.37426 * 13 12 11 15 15 C 1.53561 * 110.78202 * 260.68274 * 14 13 12 16 16 C 1.54795 * 101.82291 * 224.25586 * 15 14 13 17 17 O 1.45935 * 104.51691 * 26.16254 * 16 15 14 18 18 C 1.34396 * 109.92711 * 329.98589 * 17 16 15 19 19 O 1.20826 * 125.29803 * 200.51879 * 18 17 16 20 20 C 1.48175 * 111.00208 * 170.00149 * 11 10 9 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 25 25 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 26 26 H 1.09002 * 110.64107 * 277.63990 * 12 11 10 27 27 H 1.08998 * 110.64659 * 40.70511 * 12 11 10 28 28 H 1.08997 * 110.76844 * 205.08011 * 13 12 11 29 29 H 1.09002 * 110.93502 * 81.74454 * 13 12 11 30 30 H 1.08998 * 110.95494 * 342.39098 * 15 14 13 31 31 H 1.08998 * 110.95480 * 106.12808 * 15 14 13 32 32 H 1.08998 * 110.42734 * 267.39660 * 16 15 14 33 33 H 1.09003 * 110.52741 * 144.97066 * 16 15 14 34 34 H 1.09000 * 110.01318 * 333.65473 * 20 11 10 35 35 H 1.08998 * 110.01331 * 94.99299 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 0.5137 -4.9789 -1.0843 13 6 0.2499 -6.4968 -1.2674 14 6 1.6368 -7.1118 -1.0236 15 6 2.3349 -7.4265 -2.3546 16 6 2.9103 -8.8381 -2.0850 17 8 2.0302 -9.4036 -1.0675 18 6 1.5341 -8.4226 -0.2944 19 8 1.0766 -8.5710 0.8140 20 6 2.4253 -6.0763 -0.2184 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.8721 -3.6081 -0.8798 25 1 2.8721 -3.6002 0.9002 26 1 -0.4013 -4.4620 -0.7951 27 1 0.9280 -4.5481 -1.9958 28 1 -0.0949 -6.7098 -2.2792 29 1 -0.4682 -6.8588 -0.5317 30 1 1.6180 -7.4479 -3.1754 31 1 3.1332 -6.7118 -2.5547 32 1 3.9308 -8.7674 -1.7088 33 1 2.8811 -9.4423 -2.9917 34 1 3.2958 -5.7467 -0.7856 35 1 2.7405 -6.5039 0.7333 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560238297.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:03 Heat of formation + Delta-G solvation = -102.845395 kcal Electronic energy + Delta-G solvation = -17350.791880 eV Core-core repulsion = 14540.703727 eV Total energy + Delta-G solvation = -2810.088153 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.52652 -39.52694 -38.60651 -35.84556 -34.31414 -31.83708 -30.59865 -29.31167 -26.69998 -24.67037 -23.70160 -23.43692 -21.45998 -20.78785 -18.56534 -18.00334 -17.77262 -17.24534 -16.69426 -16.34304 -15.97448 -15.56760 -15.10931 -14.92213 -14.23235 -14.08633 -13.84168 -13.64158 -13.33225 -12.99829 -12.87649 -12.75648 -12.45164 -12.43012 -12.28882 -11.93173 -11.82671 -11.42567 -11.32413 -11.27039 -11.05007 -10.55454 -9.31115 -8.20194 -6.31810 0.90160 1.40853 1.42632 1.53596 2.21785 2.40567 2.81167 3.01194 3.13637 3.33958 3.36060 3.75750 3.85426 4.16772 4.26389 4.33975 4.41112 4.50132 4.58905 4.65509 4.71295 4.81160 4.87988 4.95910 4.99003 5.03594 5.04950 5.44405 5.61096 5.69709 5.78205 5.95587 6.09881 6.29354 6.36030 6.85141 7.37713 8.91924 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.053107 B = 0.004806 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.109066 B = 5824.645123 C = 5935.583224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.032 3.968 10 C 0.071 3.929 11 N -0.540 5.540 12 C 0.045 3.955 13 C -0.094 4.094 14 C -0.134 4.134 15 C -0.138 4.138 16 C 0.050 3.950 17 O -0.362 6.362 18 C 0.500 3.500 19 O -0.492 6.492 20 C 0.060 3.940 21 H 0.264 0.736 22 H -0.014 1.014 23 H 0.003 0.997 24 H 0.037 0.963 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.145 0.855 34 H 0.078 0.922 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 -15.923 -9.586 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.006 4.006 10 C -0.056 4.056 11 N -0.264 5.264 12 C -0.083 4.083 13 C -0.132 4.132 14 C -0.136 4.136 15 C -0.175 4.175 16 C -0.022 4.022 17 O -0.279 6.279 18 C 0.341 3.659 19 O -0.377 6.377 20 C -0.068 4.068 21 H 0.072 0.928 22 H 0.004 0.996 23 H 0.021 0.979 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.163 0.837 34 H 0.096 0.904 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.373 -16.152 -8.534 19.348 hybrid contribution 0.334 1.279 -0.225 1.340 sum 6.706 -14.874 -8.759 18.518 Atomic orbital electron populations 1.70106 1.07873 1.27798 1.51440 1.25954 0.95708 1.03331 0.94591 0.85430 0.78593 0.78322 0.78583 1.19469 1.20979 1.18780 1.21613 0.93575 0.92150 1.50918 0.91995 1.18986 0.94255 0.92130 0.95189 1.22170 0.95794 0.88129 0.99532 1.64858 1.14299 1.02916 1.44372 1.23155 0.96269 0.96016 0.92866 1.22463 0.93446 0.93591 1.03729 1.22195 0.99762 0.93807 0.97862 1.23207 1.02260 0.97616 0.94425 1.24621 0.92751 0.94157 0.90704 1.87090 1.59485 1.36889 1.44433 1.22915 0.73346 0.86058 0.83542 1.90695 1.43603 1.85618 1.17813 1.22758 0.94797 0.90122 0.99146 0.92766 0.99598 0.97894 0.94467 0.92296 0.91885 0.92611 0.86679 0.91855 0.86666 0.86647 0.87925 0.83686 0.90351 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 2 C 0.00 0.12 5.46 84.65 0.46 0.59 16 3 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.54 -30.76 9.11 25.60 0.23 -30.52 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.69 4.64 29.85 0.14 1.82 16 10 C 0.07 2.98 4.96 86.31 0.43 3.41 16 11 N -0.54 -19.92 5.41 -883.49 -4.78 -24.69 16 12 C 0.04 1.47 5.11 86.70 0.44 1.91 16 13 C -0.09 -2.37 6.20 31.55 0.20 -2.18 16 14 C -0.13 -3.07 0.85 -52.61 -0.04 -3.11 16 15 C -0.14 -1.68 6.41 31.40 0.20 -1.48 16 16 C 0.05 0.53 7.92 72.59 0.57 1.10 16 17 O -0.36 -7.91 11.07 -53.38 -0.59 -8.51 16 18 C 0.50 13.86 6.99 71.12 0.50 14.35 16 19 O -0.49 -18.20 17.92 21.60 0.39 -17.81 16 20 C 0.06 1.67 6.07 86.07 0.52 2.19 16 21 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 22 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 23 H 0.00 0.15 6.80 -2.38 -0.02 0.14 16 24 H 0.04 1.43 7.82 -2.39 -0.02 1.42 16 25 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 26 H 0.06 2.40 7.70 -2.39 -0.02 2.38 16 27 H 0.06 1.74 7.98 -2.39 -0.02 1.72 16 28 H 0.11 2.05 7.36 -2.39 -0.02 2.03 16 29 H 0.06 1.85 7.87 -2.39 -0.02 1.83 16 30 H 0.11 0.99 7.36 -2.39 -0.02 0.97 16 31 H 0.12 1.13 7.26 -2.39 -0.02 1.11 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.15 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 1.82 6.63 -2.39 -0.02 1.80 16 35 H 0.07 2.00 7.71 -2.39 -0.02 1.98 16 Total: -1.00 -73.45 285.37 2.05 -71.39 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 1.07 Total: 2.18 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 3.65 Total: -11.92 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -4.49 Total: -81.19 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.20 Total: -26.32 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -73.45 2.05 -71.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560238297.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.451 kcal (2) G-P(sol) polarization free energy of solvation -73.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds