Wall clock time and date at job start Sun Mar 29 2020 22:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99821 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99989 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.48555 * 111.00357 * 54.58380 * 12 11 10 14 14 C 1.54370 * 104.59538 * 159.04070 * 13 12 11 15 15 H 1.09000 * 118.16265 * 115.85071 * 14 13 12 16 16 C 1.53005 * 118.12787 * 272.76293 * 14 13 12 17 17 H 1.08999 * 117.44209 * 344.02990 * 16 14 13 18 18 C 1.50700 * 117.44752 * 199.31249 * 16 14 13 19 19 O 1.20823 * 120.00149 * 290.77569 * 18 16 14 20 20 O 1.34235 * 119.99564 * 110.77678 * 18 16 14 21 21 C 1.53002 * 60.54170 * 91.67104 * 16 14 13 22 22 H 1.08999 * 120.22976 * 111.45916 * 21 16 14 23 23 C 1.48560 * 110.99800 * 170.00122 * 12 11 10 24 24 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 26 26 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 27 27 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 28 28 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 29 29 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 30 30 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 31 31 H 1.08999 * 110.40792 * 277.81791 * 13 12 11 32 32 H 1.08996 * 110.40934 * 40.25461 * 13 12 11 33 33 H 0.96695 * 116.99738 * 180.02562 * 20 18 16 34 34 H 1.08998 * 110.40905 * 319.73709 * 23 12 11 35 35 H 1.08998 * 110.41270 * 82.17865 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 3.3918 -5.9866 1.1284 14 6 3.9375 -7.4171 1.3258 15 1 4.9987 -7.5919 1.1488 16 6 3.1592 -8.3664 2.2392 17 1 2.4210 -7.9260 2.9094 18 6 3.8926 -9.5665 2.7804 19 8 4.2148 -10.4633 2.0376 20 8 4.1879 -9.6391 4.0879 21 6 2.8526 -8.3443 0.7404 22 1 3.1055 -9.2011 0.1158 23 6 1.7427 -7.3960 0.2384 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8719 -3.6045 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 0.8533 -5.0451 0.8886 30 1 0.8538 -5.0445 -0.8914 31 1 4.2011 -5.3031 0.8720 32 1 2.8779 -5.6482 2.0281 33 1 4.6595 -10.4279 4.3883 34 1 0.9707 -7.2782 0.9988 35 1 1.3103 -7.7737 -0.6882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:13 Heat of formation + Delta-G solvation = -65.895494 kcal Electronic energy + Delta-G solvation = -16504.405281 eV Core-core repulsion = 13695.919396 eV Total energy + Delta-G solvation = -2808.485885 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.00339 -39.45947 -36.47441 -35.36232 -33.24648 -31.11475 -28.54076 -27.47449 -25.39354 -23.31294 -21.40806 -20.88031 -20.43217 -19.41317 -18.45228 -17.39501 -16.35032 -15.93764 -15.41763 -15.05031 -14.45056 -14.25640 -13.96884 -13.30542 -13.01434 -12.68856 -12.39071 -12.06146 -11.88984 -11.64270 -11.42588 -11.28441 -10.86018 -10.83325 -10.62351 -10.51863 -10.44335 -10.25879 -9.70254 -9.35067 -9.06742 -8.34784 -8.30745 -5.99964 -4.02192 1.75013 2.57393 3.32406 3.33412 3.38547 3.41882 4.04922 4.34867 4.45332 4.46585 4.60186 4.91846 4.95141 5.10523 5.35978 5.40024 5.45893 5.67121 5.71094 5.75258 5.86443 5.98644 6.02900 6.16329 6.24462 6.61685 6.71528 6.89864 7.14223 7.26673 7.59111 7.67216 7.81436 7.99996 8.42985 9.04909 9.61957 11.11487 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.049685 B = 0.003809 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.413876 B = 7349.638223 C = 7612.962680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.109 4.109 11 C 0.044 3.956 12 N -0.509 5.509 13 C 0.062 3.938 14 C -0.128 4.128 15 H 0.125 0.875 16 C -0.146 4.146 17 H 0.133 0.867 18 C 0.515 3.485 19 O -0.514 6.514 20 O -0.511 6.511 21 C -0.125 4.125 22 H 0.131 0.869 23 C 0.058 3.942 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.411 0.589 34 H 0.049 0.951 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.868 -17.771 5.555 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.083 4.083 12 N -0.233 5.233 13 C -0.066 4.066 14 C -0.147 4.147 15 H 0.142 0.858 16 C -0.165 4.165 17 H 0.151 0.849 18 C 0.358 3.642 19 O -0.402 6.402 20 O -0.322 6.322 21 C -0.143 4.143 22 H 0.149 0.851 23 C -0.070 4.070 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.270 0.730 34 H 0.067 0.933 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.845 -17.504 4.676 19.037 hybrid contribution 0.271 0.371 1.093 1.185 sum 6.116 -17.133 5.769 19.085 Atomic orbital electron populations 1.69963 1.06066 1.26587 1.50972 1.25027 0.94846 0.99271 0.95353 0.86594 0.79834 0.83461 0.78123 1.20645 1.21261 1.19878 1.21245 0.93044 0.91032 1.50431 0.92674 1.19072 0.93999 0.91355 0.97160 1.21711 0.99296 0.92791 1.00885 1.22506 0.94092 0.90953 1.00744 1.65672 1.15244 1.01731 1.40683 1.22684 0.97179 0.93240 0.93451 1.23539 0.98143 0.92830 1.00160 0.85751 1.21871 1.03500 0.96298 0.94829 0.84936 1.22207 0.75732 0.86626 0.79662 1.90722 1.50800 1.39698 1.59026 1.84525 1.71817 1.49026 1.26876 1.23508 0.98576 1.01091 0.91174 0.85102 1.22722 0.94071 0.89522 1.00666 0.93020 0.96514 0.96803 0.93335 0.92450 0.94884 0.90597 0.88530 0.92862 0.72975 0.93268 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.20 4.87 -26.73 -0.13 -2.33 16 11 C 0.04 0.74 5.06 -3.82 -0.02 0.72 16 12 N -0.51 -7.37 5.49 -229.98 -1.26 -8.63 16 13 C 0.06 0.81 4.91 -2.19 -0.01 0.80 16 14 C -0.13 -1.42 6.83 -89.24 -0.61 -2.03 16 15 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 16 C -0.15 -1.50 5.85 -91.77 -0.54 -2.04 16 17 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 18 C 0.52 5.42 8.11 36.01 0.29 5.72 16 19 O -0.51 -6.76 17.11 -18.75 -0.32 -7.08 16 20 O -0.51 -4.12 13.42 -39.27 -0.53 -4.65 16 21 C -0.12 -1.38 6.55 -89.24 -0.58 -1.96 16 22 H 0.13 1.45 7.84 -51.93 -0.41 1.05 16 23 C 0.06 0.69 6.30 -2.18 -0.01 0.67 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.95 6.84 -51.93 -0.36 0.60 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.03 0.55 7.88 -51.93 -0.41 0.14 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.10 1.29 7.67 -51.93 -0.40 0.89 16 32 H 0.05 0.70 8.00 -51.93 -0.42 0.29 16 33 H 0.41 1.44 9.10 45.56 0.41 1.86 16 34 H 0.05 0.57 7.82 -51.93 -0.41 0.16 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 296.36 15.07 4.47 4.47 Total: -1.00 -32.28 296.36 -8.57 -40.85 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.48 Total: -1.86 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -2.16 Total: -13.52 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.53 Total: -34.83 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.85 Total: -11.73 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.28 -8.57 -40.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.043 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds