Wall clock time and date at job start Sun Mar 29 2020 22:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00013 * 2 1 4 4 H 1.48504 * 109.47008 * 270.00232 * 3 2 1 5 5 H 1.48502 * 109.47130 * 29.99865 * 3 2 1 6 6 H 1.48498 * 109.47567 * 149.99923 * 3 2 1 7 7 C 1.37880 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99672 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99829 * 180.02562 * 7 2 1 10 10 N 1.46910 * 109.46539 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99464 * 180.02562 * 10 9 7 12 12 H 1.09003 * 112.78120 * 307.78447 * 11 10 9 13 13 C 1.53626 * 113.52632 * 78.70588 * 11 10 9 14 14 C 1.53504 * 87.59610 * 90.53774 * 13 11 10 15 15 H 1.09001 * 115.96893 * 143.44382 * 14 13 11 16 16 C 1.54687 * 113.40549 * 279.73225 * 14 13 11 17 17 C 1.54875 * 102.82711 * 131.24242 * 16 14 13 18 18 H 1.09005 * 110.48671 * 80.63081 * 17 16 14 19 19 C 1.50703 * 110.48607 * 203.13751 * 17 16 14 20 20 O 1.20825 * 119.99649 * 116.75856 * 19 17 16 21 21 O 1.34232 * 120.00015 * 296.76422 * 19 17 16 22 22 C 1.54238 * 104.20354 * 321.95116 * 17 16 14 23 23 C 1.53811 * 113.52334 * 176.78047 * 11 10 9 24 24 H 1.08998 * 115.62974 * 151.63565 * 23 11 10 25 25 H 0.97000 * 120.00082 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47093 * 60.00620 * 9 7 2 27 27 H 1.08994 * 109.46990 * 299.99524 * 9 7 2 28 28 H 1.00900 * 111.00119 * 56.04610 * 10 9 7 29 29 H 1.09005 * 113.53009 * 335.85556 * 13 11 10 30 30 H 1.09004 * 113.59775 * 205.23045 * 13 11 10 31 31 H 1.08997 * 110.74234 * 12.90737 * 16 14 13 32 32 H 1.09008 * 110.73845 * 249.57501 * 16 14 13 33 33 H 0.96696 * 116.99504 * 179.97438 * 21 19 17 34 34 H 1.09005 * 110.01818 * 142.93947 * 22 17 16 35 35 H 1.08998 * 110.01699 * 264.33183 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4697 -2.6182 0.0022 12 1 5.9087 -2.0136 -0.7915 13 6 6.0889 -2.3593 1.3841 14 6 6.0359 -3.8751 1.6203 15 1 6.8698 -4.3007 2.1784 16 6 4.6379 -4.3820 2.0465 17 6 4.4049 -5.5849 1.0993 18 1 4.9241 -6.4687 1.4702 19 6 2.9310 -5.8633 0.9530 20 8 2.3992 -5.7509 -0.1261 21 8 2.2091 -6.2359 2.0216 22 6 5.0072 -5.1298 -0.2457 23 6 6.0458 -4.0421 0.0813 24 1 7.0239 -4.1813 -0.3792 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 3.6260 -3.0952 -0.7806 29 1 5.4408 -1.7917 2.0519 30 1 7.1026 -1.9608 1.3403 31 1 3.8829 -3.6125 1.8861 32 1 4.6456 -4.7060 3.0873 33 1 1.2675 -6.4030 1.8785 34 1 5.4914 -5.9712 -0.7415 35 1 4.2255 -4.7193 -0.8848 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:56 Heat of formation + Delta-G solvation = -68.225252 kcal Electronic energy + Delta-G solvation = -17897.612173 eV Core-core repulsion = 15089.025262 eV Total energy + Delta-G solvation = -2808.586911 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.80884 -39.27829 -35.77390 -34.40987 -32.69685 -31.58983 -28.82054 -26.91030 -25.36747 -22.78808 -21.99245 -20.94005 -19.71464 -17.86660 -17.69038 -16.67132 -16.48644 -16.25564 -15.30668 -14.91778 -14.00247 -13.86819 -13.58668 -13.06974 -12.60254 -12.52029 -12.15421 -11.97743 -11.45743 -11.33977 -11.14639 -10.94341 -10.78107 -10.73673 -10.50155 -10.30334 -10.01396 -9.92999 -9.71715 -9.60637 -9.19179 -8.57633 -7.40150 -6.03648 -4.01344 2.62295 3.29210 3.36621 3.38120 3.39301 4.43045 4.43729 4.68272 4.92735 5.06676 5.19998 5.29115 5.33678 5.44267 5.63966 5.67571 5.74269 5.83619 5.87086 6.04479 6.09837 6.22097 6.30352 6.44932 6.62250 6.70138 6.81926 6.87094 6.99235 7.06369 7.65207 7.92928 8.26703 8.33884 8.67564 9.05829 9.58279 11.09705 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.023487 B = 0.008532 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.846921 B = 3280.783233 C = 4045.041775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.078 0.922 9 C 0.165 3.835 10 N -0.659 5.659 11 C 0.066 3.934 12 H 0.037 0.963 13 C -0.128 4.128 14 C -0.103 4.103 15 H 0.079 0.921 16 C -0.101 4.101 17 C -0.073 4.073 18 H 0.098 0.902 19 C 0.489 3.511 20 O -0.508 6.508 21 O -0.521 6.521 22 C -0.101 4.101 23 C -0.113 4.113 24 H 0.095 0.905 25 H 0.263 0.737 26 H 0.027 0.973 27 H -0.022 1.022 28 H 0.341 0.659 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.063 0.937 33 H 0.406 0.594 34 H 0.060 0.940 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.256 -10.324 3.474 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.292 5.292 11 C -0.045 4.045 12 H 0.055 0.945 13 C -0.165 4.165 14 C -0.121 4.121 15 H 0.097 0.903 16 C -0.138 4.138 17 C -0.092 4.092 18 H 0.116 0.884 19 C 0.331 3.669 20 O -0.395 6.395 21 O -0.332 6.332 22 C -0.139 4.139 23 C -0.132 4.132 24 H 0.113 0.887 25 H 0.073 0.927 26 H 0.045 0.955 27 H -0.004 1.004 28 H 0.162 0.838 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.138 0.862 32 H 0.081 0.919 33 H 0.265 0.735 34 H 0.079 0.921 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.300 -10.158 3.901 16.423 hybrid contribution -0.066 1.106 -1.061 1.534 sum 12.235 -9.052 2.840 15.482 Atomic orbital electron populations 1.69905 1.06155 1.26779 1.51087 1.24901 0.94725 0.98879 0.94819 0.86828 0.80326 0.83946 0.78394 1.20453 1.21248 1.19145 1.21058 0.88949 0.94760 1.50412 0.90344 1.19988 0.96432 0.85082 0.94776 1.60535 1.03023 1.16467 1.49210 1.22488 0.90840 0.94869 0.96327 0.94533 1.22818 0.99936 0.95881 0.97906 1.23059 0.97224 0.96503 0.95303 0.90309 1.22536 0.98055 0.96784 0.96463 1.21707 0.87454 1.00729 0.99319 0.88374 1.23313 0.90466 0.71941 0.81228 1.90710 1.72666 1.47628 1.28462 1.84503 1.27352 1.80504 1.40882 1.21948 0.98759 0.97679 0.95522 1.23392 0.98055 0.94756 0.96984 0.88722 0.92718 0.95489 1.00391 0.83847 0.90562 0.90787 0.86200 0.91866 0.73529 0.92114 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.51 -14.82 9.87 -34.44 -0.34 -15.16 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.16 3.99 4.43 -4.97 -0.02 3.97 16 10 N -0.66 -13.34 3.52 -107.20 -0.38 -13.71 16 11 C 0.07 1.08 3.91 -66.97 -0.26 0.82 16 12 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 13 C -0.13 -1.87 7.20 -26.14 -0.19 -2.06 16 14 C -0.10 -1.33 4.96 -88.52 -0.44 -1.77 16 15 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 16 C -0.10 -1.46 5.49 -24.85 -0.14 -1.60 16 17 C -0.07 -0.99 3.36 -90.13 -0.30 -1.30 16 18 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 19 C 0.49 7.78 7.62 36.01 0.27 8.05 16 20 O -0.51 -9.78 16.21 -18.75 -0.30 -10.09 16 21 O -0.52 -7.09 13.42 -39.26 -0.53 -7.62 16 22 C -0.10 -1.40 5.42 -25.61 -0.14 -1.54 16 23 C -0.11 -1.50 4.91 -88.77 -0.44 -1.93 16 24 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 26 H 0.03 0.67 6.56 -51.93 -0.34 0.33 16 27 H -0.02 -0.53 7.57 -51.93 -0.39 -0.92 16 28 H 0.34 7.17 6.76 -39.29 -0.27 6.90 16 29 H 0.08 1.27 7.60 -51.93 -0.39 0.88 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.12 2.20 5.93 -51.93 -0.31 1.89 16 32 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.41 4.09 9.10 45.56 0.41 4.50 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.53 4.68 -51.93 -0.24 1.29 16 LS Contribution 279.56 15.07 4.21 4.21 Total: -1.00 -32.54 279.56 -7.06 -39.60 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.08 Total: 8.27 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -2.09 Total: -10.62 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.40 Total: -40.96 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.83 Total: -17.70 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.54 -7.06 -39.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.622 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds