Wall clock time and date at job start Sun Mar 29 2020 22:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47010 * 270.00534 * 3 2 1 5 5 H 1.48503 * 109.46954 * 30.00014 * 3 2 1 6 6 H 1.48493 * 109.47251 * 150.00223 * 3 2 1 7 7 C 1.37877 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00735 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99845 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.47381 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00277 * 179.97438 * 10 9 7 12 12 H 1.09007 * 112.84012 * 336.16690 * 11 10 9 13 13 C 1.53777 * 113.60427 * 107.43995 * 11 10 9 14 14 C 1.53498 * 87.06461 * 140.58863 * 13 11 10 15 15 H 1.09002 * 115.59088 * 91.72171 * 14 13 11 16 16 C 1.53680 * 114.83920 * 228.72230 * 14 13 11 17 17 C 1.54403 * 105.81093 * 65.01958 * 16 14 13 18 18 H 1.09001 * 110.58601 * 258.96722 * 17 16 14 19 19 C 1.50699 * 109.43299 * 137.78247 * 17 16 14 20 20 O 1.20825 * 119.99943 * 242.64388 * 19 17 16 21 21 O 1.34233 * 119.99752 * 62.64822 * 19 17 16 22 22 C 1.53479 * 107.11164 * 18.69964 * 17 16 14 23 23 C 1.53737 * 107.37826 * 358.71793 * 22 17 16 24 24 H 1.08997 * 115.48903 * 113.86746 * 23 22 17 25 25 H 0.96996 * 119.99683 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47406 * 59.99741 * 9 7 2 27 27 H 1.09004 * 109.46879 * 299.99729 * 9 7 2 28 28 H 1.00900 * 110.99900 * 303.95695 * 10 9 7 29 29 H 1.08995 * 113.61881 * 26.04987 * 13 11 10 30 30 H 1.08998 * 113.62000 * 255.13146 * 13 11 10 31 31 H 1.08999 * 110.10403 * 185.15920 * 16 14 13 32 32 H 1.09001 * 110.10426 * 306.79105 * 16 14 13 33 33 H 0.96698 * 116.99768 * 179.97438 * 21 19 17 34 34 H 1.09001 * 109.86097 * 239.27414 * 22 17 16 35 35 H 1.08990 * 109.86782 * 118.16937 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 4.0012 -2.5792 -0.0022 11 6 5.4696 -2.6184 -0.0034 12 1 5.9168 -1.7109 -0.4093 13 6 6.0749 -3.0578 1.3402 14 6 7.1073 -3.8500 0.5261 15 1 8.0294 -3.3187 0.2905 16 6 7.3035 -5.3066 0.9752 17 6 5.9596 -6.0159 0.7016 18 1 5.3855 -6.1177 1.6226 19 6 6.2223 -7.3760 0.1083 20 8 5.8336 -7.6343 -1.0062 21 8 6.8879 -8.3007 0.8181 22 6 5.1874 -5.1487 -0.3020 23 6 6.0513 -3.9126 -0.6008 24 1 6.4271 -3.8385 -1.6212 25 1 -0.4849 0.8400 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8745 -0.6802 -0.8912 28 1 3.6259 -3.0960 0.7789 29 1 5.4111 -3.6865 1.9334 30 1 6.5072 -2.2376 1.9134 31 1 8.1129 -5.7674 0.4090 32 1 7.5236 -5.3433 2.0421 33 1 7.0320 -9.1585 0.3956 34 1 4.2359 -4.8397 0.1307 35 1 5.0140 -5.7100 -1.2200 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184905.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:00 Heat of formation + Delta-G solvation = -98.349230 kcal Electronic energy + Delta-G solvation = -17173.405955 eV Core-core repulsion = 14363.512771 eV Total energy + Delta-G solvation = -2809.893184 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.10354 -40.63109 -37.13577 -36.40933 -34.55939 -33.00944 -30.10599 -28.67264 -26.66314 -24.63641 -23.55568 -22.46094 -20.64215 -19.65916 -18.97166 -18.64608 -18.07373 -16.89756 -16.85215 -16.14312 -15.78151 -15.50821 -15.26502 -14.57512 -14.41468 -14.05722 -13.54881 -13.35731 -12.99060 -12.79884 -12.59649 -12.56858 -12.30574 -12.23499 -11.93413 -11.73147 -11.70157 -11.58857 -11.28023 -10.95493 -10.85650 -10.79475 -8.96724 -8.29279 -6.33637 1.21907 1.35786 1.37189 1.48266 2.14066 2.34884 3.05140 3.30610 3.47833 3.63302 3.76381 4.05107 4.15551 4.25137 4.35004 4.53327 4.62827 4.71644 4.79295 4.80948 4.86346 4.92054 5.05383 5.10605 5.18691 5.21489 5.33207 5.49341 5.55268 5.56548 5.67732 6.02579 6.62513 6.70428 6.82049 7.02000 7.31838 8.87676 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.043829 B = 0.005097 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.694834 B = 5492.622094 C = 5875.482828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.248 1.248 7 C -0.528 4.528 8 H 0.035 0.965 9 C 0.176 3.824 10 N -0.678 5.678 11 C 0.058 3.942 12 H 0.087 0.913 13 C -0.150 4.150 14 C -0.097 4.097 15 H 0.118 0.882 16 C -0.088 4.088 17 C -0.082 4.082 18 H 0.125 0.875 19 C 0.490 3.510 20 O -0.553 6.553 21 O -0.507 6.507 22 C -0.101 4.101 23 C -0.105 4.105 24 H 0.078 0.922 25 H 0.267 0.733 26 H -0.010 1.010 27 H 0.020 0.980 28 H 0.338 0.662 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.426 0.574 34 H 0.074 0.926 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.607 -11.338 4.783 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.171 1.171 7 C -0.567 4.567 8 H 0.053 0.947 9 C 0.047 3.953 10 N -0.308 5.308 11 C -0.053 4.053 12 H 0.105 0.895 13 C -0.189 4.189 14 C -0.116 4.116 15 H 0.136 0.864 16 C -0.126 4.126 17 C -0.101 4.101 18 H 0.143 0.857 19 C 0.334 3.666 20 O -0.443 6.443 21 O -0.320 6.320 22 C -0.139 4.139 23 C -0.125 4.125 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.007 0.993 27 H 0.038 0.962 28 H 0.157 0.843 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.287 0.713 34 H 0.093 0.907 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.218 -10.999 3.990 22.499 hybrid contribution -0.325 0.364 0.218 0.534 sum 18.893 -10.635 4.208 22.085 Atomic orbital electron populations 1.70064 1.08259 1.28193 1.52493 1.25907 0.95627 1.03397 0.94152 0.85626 0.79373 0.78244 0.79114 1.19343 1.20687 1.17140 1.21392 0.91661 0.93326 1.50277 0.94660 1.19751 0.93397 0.87593 0.94536 1.60266 1.06889 1.14084 1.49564 1.23210 0.87325 0.97726 0.97034 0.89474 1.23531 0.98648 1.00132 0.96616 1.23001 0.97218 0.95717 0.95620 0.86416 1.21933 0.93682 0.93449 1.03509 1.21764 1.00195 0.87533 1.00649 0.85716 1.23665 0.72578 0.87385 0.82969 1.90703 1.50460 1.80780 1.22399 1.84509 1.69634 1.27755 1.50142 1.21700 0.98718 0.94473 0.98980 1.23251 0.96293 0.94100 0.98822 0.90402 0.92410 0.99278 0.96215 0.84322 0.89617 0.90907 0.90333 0.88375 0.71293 0.90715 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.95 44.29 27.47 68.60 1.88 46.18 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.53 -30.97 9.87 25.60 0.25 -30.72 16 8 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 9 C 0.18 8.39 4.35 85.56 0.37 8.76 16 10 N -0.68 -27.23 5.65 -492.55 -2.78 -30.01 16 11 C 0.06 1.76 4.03 45.50 0.18 1.94 16 12 H 0.09 2.70 7.87 -2.38 -0.02 2.68 16 13 C -0.15 -3.47 6.91 31.02 0.21 -3.26 16 14 C -0.10 -1.85 4.83 -9.87 -0.05 -1.90 16 15 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 16 C -0.09 -1.41 5.99 31.30 0.19 -1.22 16 17 C -0.08 -1.66 2.94 -10.90 -0.03 -1.70 16 18 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 19 C 0.49 10.63 7.41 71.24 0.53 11.16 16 20 O -0.55 -16.42 15.94 21.97 0.35 -16.07 16 21 O -0.51 -7.42 13.40 -51.45 -0.69 -8.11 16 22 C -0.10 -2.76 5.45 31.00 0.17 -2.59 16 23 C -0.11 -2.77 5.00 -9.69 -0.05 -2.81 16 24 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 26 H -0.01 -0.49 7.20 -2.39 -0.02 -0.50 16 27 H 0.02 0.95 7.56 -2.38 -0.02 0.93 16 28 H 0.34 13.20 7.18 -89.69 -0.64 12.56 16 29 H 0.09 1.95 7.15 -2.39 -0.02 1.93 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 1.16 7.80 -2.39 -0.02 1.14 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.43 2.75 9.10 -74.06 -0.67 2.08 16 34 H 0.07 2.28 6.05 -2.39 -0.01 2.27 16 35 H 0.06 2.07 6.36 -2.39 -0.02 2.05 16 Total: -1.00 -72.54 282.77 1.04 -71.50 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -0.26 Total: 17.75 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 2.24 Total: -21.49 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -2.48 Total: -89.77 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.34 Total: -24.17 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -72.54 1.04 -71.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184905.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.846 kcal (2) G-P(sol) polarization free energy of solvation -72.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds