Wall clock time and date at job start Sun Mar 29 2020 23:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47286 * 2 1 4 4 O 1.20758 * 119.99795 * 354.78277 * 3 2 1 5 5 C 1.50696 * 120.00187 * 175.06125 * 3 2 1 6 6 C 1.50696 * 115.55389 * 39.73899 * 5 3 2 7 7 O 1.21284 * 120.00060 * 245.49108 * 6 5 3 8 8 N 1.34776 * 119.99689 * 65.48264 * 6 5 3 9 9 C 1.46507 * 119.99841 * 174.93934 * 8 6 5 10 10 H 1.09000 * 109.47070 * 325.00873 * 9 8 6 11 11 C 1.53005 * 109.46948 * 85.00201 * 9 8 6 12 12 C 1.50695 * 109.47323 * 205.00398 * 9 8 6 13 13 H 1.08009 * 119.99910 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00311 * 179.97438 * 12 9 8 15 15 N 1.31519 * 119.99731 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00206 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.46921 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.46908 * 120.00112 * 16 14 12 19 19 H 1.48506 * 109.46757 * 240.00219 * 16 14 12 20 20 C 1.53006 * 117.49736 * 254.03273 * 5 3 2 21 21 C 1.53001 * 59.99972 * 252.50835 * 20 5 3 22 22 H 1.09005 * 109.47431 * 60.00116 * 1 2 3 23 23 H 1.09001 * 109.47258 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47189 * 299.99457 * 1 2 3 25 25 H 1.09003 * 109.47189 * 240.00543 * 2 1 3 26 26 H 1.08996 * 109.47573 * 120.00469 * 2 1 3 27 27 H 0.97000 * 120.00309 * 354.94183 * 8 6 5 28 28 H 1.08994 * 109.46944 * 60.00095 * 11 9 8 29 29 H 1.09002 * 109.47005 * 179.97438 * 11 9 8 30 30 H 1.08995 * 109.47191 * 299.99994 * 11 9 8 31 31 H 0.97001 * 119.99996 * 179.97438 * 15 14 12 32 32 H 1.09000 * 117.49545 * 359.97438 * 20 5 3 33 33 H 1.09002 * 117.49603 * 145.01988 * 20 5 3 34 34 H 1.08994 * 117.50196 * 252.51115 * 21 20 5 35 35 H 1.09002 * 117.49474 * 107.48925 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2517 2.3372 -0.0951 5 6 3.5093 1.6978 0.1124 6 6 4.4062 0.7651 -0.6601 7 8 5.1674 0.0283 -0.0697 8 7 4.3623 0.7497 -2.0071 9 6 5.3099 -0.0745 -2.7615 10 1 6.2695 -0.0899 -2.2448 11 6 4.7682 -1.5010 -2.8737 12 6 5.4913 0.5040 -4.1411 13 1 4.9541 1.3961 -4.4276 14 6 6.3430 -0.1056 -5.0377 15 7 6.9968 -1.1922 -4.6891 16 14 6.5674 0.6111 -6.7482 17 1 5.7247 1.8256 -6.8904 18 1 7.9937 0.9711 -6.9508 19 1 6.1614 -0.3941 -7.7632 20 6 4.0283 2.2319 1.4490 21 6 3.9469 3.1588 0.2344 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.7033 1.2843 -2.4770 28 1 3.8086 -1.4857 -3.3903 29 1 5.4731 -2.1141 -3.4354 30 1 4.6371 -1.9194 -1.8759 31 1 7.5957 -1.6213 -5.3200 32 1 3.3012 2.3833 2.2468 33 1 5.0185 1.9085 1.7698 34 1 4.8835 3.4453 -0.2438 35 1 3.1663 3.9197 0.2334 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628808000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:01 Heat of formation + Delta-G solvation = -62.145348 kcal Electronic energy + Delta-G solvation = -17409.843397 eV Core-core repulsion = 14601.520131 eV Total energy + Delta-G solvation = -2808.323266 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.39321 -38.57581 -35.94078 -34.72638 -32.85714 -32.38135 -29.10140 -26.51034 -25.29212 -23.42584 -22.40625 -21.41512 -20.06792 -18.85992 -17.47587 -16.23512 -15.59846 -15.44360 -15.22118 -14.96913 -14.49482 -13.80816 -13.54117 -13.10668 -12.91781 -12.47974 -12.37094 -11.80103 -11.73062 -11.57661 -11.19192 -11.14830 -11.04203 -10.98564 -10.84823 -10.42540 -10.32293 -10.24844 -9.65121 -9.13417 -9.05548 -8.60149 -8.01189 -6.16792 -4.26230 1.83893 3.07918 3.21449 3.29454 3.32331 3.60479 3.84667 4.10994 4.33027 4.84658 4.86170 4.96847 5.13724 5.15144 5.17323 5.29194 5.58908 5.63235 5.80503 5.83937 5.89256 5.93262 6.12261 6.13190 6.76558 6.90631 7.08725 7.36187 7.42225 7.50121 7.64662 7.85461 8.09481 8.57154 8.71490 9.00003 9.41512 10.89192 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.028234 B = 0.006407 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.476046 B = 4369.008559 C = 4512.710199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.173 4.173 3 C 0.404 3.596 4 O -0.450 6.450 5 C -0.227 4.227 6 C 0.544 3.456 7 O -0.543 6.543 8 N -0.701 5.701 9 C 0.265 3.735 10 H 0.048 0.952 11 C -0.148 4.148 12 C -0.535 4.535 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.883 5.883 16 Si 0.902 3.098 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.122 4.122 21 C -0.138 4.138 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.389 0.611 28 H 0.026 0.974 29 H 0.091 0.909 30 H 0.017 0.983 31 H 0.264 0.736 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.783 4.149 8.331 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.211 4.211 3 C 0.280 3.720 4 O -0.323 6.323 5 C -0.231 4.231 6 C 0.327 3.673 7 O -0.421 6.421 8 N -0.348 5.348 9 C 0.164 3.836 10 H 0.066 0.934 11 C -0.207 4.207 12 C -0.573 4.573 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.521 5.521 16 Si 0.729 3.271 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.159 4.159 21 C -0.175 4.175 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.123 0.877 26 H 0.118 0.882 27 H 0.222 0.778 28 H 0.046 0.954 29 H 0.109 0.891 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.488 3.961 8.584 12.705 hybrid contribution -0.040 0.427 -1.256 1.328 sum -8.528 4.388 7.328 12.070 Atomic orbital electron populations 1.21588 0.93589 1.01889 1.02771 1.22027 0.98037 0.95444 1.05557 1.23505 0.87562 0.91232 0.69746 1.90359 1.57930 1.48084 1.35971 1.22258 0.95706 0.99717 1.05439 1.18917 0.82823 0.82464 0.83094 1.90668 1.40629 1.41490 1.69306 1.46545 1.36483 1.46913 1.04868 1.18800 0.87640 0.86936 0.90245 0.93385 1.22082 1.00502 0.99778 0.98295 1.21256 1.27074 1.11805 0.97182 0.91959 1.24883 0.95134 0.94773 0.98852 1.69910 1.27695 1.18785 1.35675 0.86389 0.78051 0.79071 0.83592 1.19699 1.20825 1.20819 1.22947 1.03322 1.00231 0.89397 1.23052 1.03639 0.90055 1.00783 0.91990 0.91930 0.92450 0.87692 0.88152 0.77827 0.95435 0.89053 0.96422 0.92571 0.88012 0.86791 0.87391 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.22 37.16 0.34 -1.23 16 2 C -0.17 -2.22 5.86 -27.89 -0.16 -2.39 16 3 C 0.40 5.88 6.71 -29.04 -0.19 5.69 16 4 O -0.45 -7.14 15.90 6.00 0.10 -7.04 16 5 C -0.23 -3.48 2.35 -156.81 -0.37 -3.85 16 6 C 0.54 10.61 6.46 -10.99 -0.07 10.54 16 7 O -0.54 -12.47 16.37 5.55 0.09 -12.38 16 8 N -0.70 -14.45 5.07 -54.93 -0.28 -14.72 16 9 C 0.27 6.61 2.52 -69.08 -0.17 6.43 16 10 H 0.05 1.38 7.66 -51.93 -0.40 0.98 16 11 C -0.15 -3.59 9.26 37.16 0.34 -3.24 16 12 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 13 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 15 N -0.88 -24.54 11.32 55.43 0.63 -23.91 16 16 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.12 -1.57 9.76 -26.73 -0.26 -1.83 16 21 C -0.14 -1.84 9.75 -26.73 -0.26 -2.10 16 22 H 0.06 0.72 8.04 -51.93 -0.42 0.31 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.10 1.44 8.05 -51.93 -0.42 1.02 16 26 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.39 7.29 8.54 -40.82 -0.35 6.94 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 30 H 0.02 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.11 1.53 8.00 -51.93 -0.42 1.11 16 34 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.11 1.36 7.68 -51.93 -0.40 0.96 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -29.77 302.47 -6.34 -36.11 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.21 Total: 6.54 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.20 Total: -4.61 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.35 Total: -38.64 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.19 Total: -19.42 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.77 -6.34 -36.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628808000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.039 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds