Wall clock time and date at job start Sun Mar 29 2020 22:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99419 * 2 1 4 4 C 1.53000 * 109.46813 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47073 * 65.00143 * 4 3 2 6 6 C 1.46902 * 111.00258 * 190.00003 * 5 4 3 7 7 C 1.50702 * 109.47090 * 71.24610 * 6 5 4 8 8 H 1.07998 * 120.00098 * 4.72116 * 7 6 5 9 9 C 1.37879 * 119.99918 * 184.71544 * 7 6 5 10 10 N 1.31520 * 120.00047 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99705 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47188 * 90.00378 * 11 9 7 13 13 H 1.48507 * 109.47055 * 210.00256 * 11 9 7 14 14 H 1.48501 * 109.47519 * 329.99945 * 11 9 7 15 15 C 1.46896 * 111.00152 * 66.04715 * 5 4 3 16 16 C 1.50706 * 109.47376 * 199.54051 * 15 5 4 17 17 C 1.34508 * 125.79206 * 89.99265 * 16 15 5 18 18 C 1.41385 * 106.84272 * 180.02562 * 17 16 15 19 19 C 1.34516 * 106.83852 * 0.02562 * 18 17 16 20 20 O 1.34304 * 108.42238 * 359.73882 * 19 18 17 21 21 H 1.09000 * 109.47132 * 299.99579 * 1 2 3 22 22 H 1.08998 * 109.47306 * 59.99983 * 1 2 3 23 23 H 1.09000 * 109.46838 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47109 * 60.00408 * 3 2 1 25 25 H 1.08996 * 109.47492 * 300.00229 * 3 2 1 26 26 H 1.08996 * 109.47296 * 304.99993 * 4 3 2 27 27 H 1.09002 * 109.46990 * 185.00224 * 4 3 2 28 28 H 1.08994 * 109.47660 * 191.25465 * 6 5 4 29 29 H 1.09002 * 109.46691 * 311.25257 * 6 5 4 30 30 H 0.96991 * 119.99837 * 179.97438 * 10 9 7 31 31 H 1.08996 * 109.47357 * 79.53728 * 15 5 4 32 32 H 1.08999 * 109.47196 * 319.53889 * 15 5 4 33 33 H 1.08001 * 126.57980 * 0.04568 * 17 16 15 34 34 H 1.07996 * 126.58215 * 179.97438 * 18 17 16 35 35 H 1.07995 * 125.78975 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9768 0.5630 -1.2561 6 6 5.4025 0.2140 -1.1980 7 6 5.5965 -0.9525 -0.2638 8 1 4.7394 -1.4394 0.1774 9 6 6.8683 -1.3981 0.0277 10 7 7.9122 -0.8049 -0.5092 11 14 7.1087 -2.8444 1.1852 12 1 7.1133 -4.1077 0.4046 13 1 8.4033 -2.6982 1.8979 14 1 6.0007 -2.8772 2.1734 15 6 3.6948 1.4358 -2.4036 16 6 3.7012 0.6187 -3.6699 17 6 2.6367 0.0017 -4.2133 18 6 3.0919 -0.6437 -5.3861 19 6 4.4075 -0.3827 -5.4888 20 8 4.7700 0.3868 -4.4495 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6885 1.8464 0.8901 25 1 1.6884 1.8465 -0.8899 26 1 3.8514 0.5684 0.8409 27 1 3.9783 2.1767 0.0890 28 1 5.7513 -0.0567 -2.1946 29 1 5.9714 1.0696 -0.8340 30 1 8.8068 -1.1182 -0.3038 31 1 4.4589 2.2105 -2.4672 32 1 2.7169 1.8997 -2.2755 33 1 1.6278 -0.0002 -3.8279 34 1 2.4976 -1.2336 -6.0681 35 1 5.0604 -0.7291 -6.2762 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046600823.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:50 Heat of formation + Delta-G solvation = -19.976735 kcal Electronic energy + Delta-G solvation = -17426.833024 eV Core-core repulsion = 14620.338327 eV Total energy + Delta-G solvation = -2806.494698 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.97520 -37.91694 -36.19214 -32.66136 -32.35479 -30.52549 -29.10690 -26.78432 -25.89656 -24.36185 -22.24541 -21.19276 -20.57535 -19.52465 -16.93408 -16.44301 -15.99312 -15.70468 -15.54079 -14.74496 -14.54497 -14.25800 -13.84185 -13.38669 -12.76161 -12.28657 -12.22625 -12.11288 -11.86419 -11.82876 -11.38096 -11.22723 -11.00430 -10.72183 -10.52409 -10.20359 -9.77831 -9.39531 -9.31066 -9.11074 -8.35368 -7.93140 -7.24836 -5.94466 -3.94824 2.28573 3.13129 3.38109 3.43496 3.48594 3.57183 4.19480 4.50038 4.95471 5.23282 5.34768 5.40307 5.44790 5.48982 5.51181 5.60062 5.69000 5.73898 5.82866 5.87300 5.94536 6.17779 6.28812 6.42204 6.62304 6.65254 7.01665 7.27006 7.34795 7.59574 7.72042 7.89430 8.14724 8.20105 8.58356 9.14549 9.68725 11.16231 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.009476 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.432837 B = 2953.996410 C = 4158.440143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.065 3.935 4 C 0.063 3.937 5 N -0.522 5.522 6 C 0.191 3.809 7 C -0.501 4.501 8 H 0.066 0.934 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.273 1.273 15 C 0.125 3.875 16 C 0.024 3.976 17 C -0.208 4.208 18 C -0.219 4.219 19 C -0.050 4.050 20 O -0.170 6.170 21 H 0.032 0.968 22 H 0.034 0.966 23 H 0.080 0.920 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.098 0.902 27 H 0.038 0.962 28 H 0.033 0.967 29 H -0.004 1.004 30 H 0.260 0.740 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 4.931 -4.420 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C -0.012 4.012 4 C -0.065 4.065 5 N -0.247 5.247 6 C 0.066 3.934 7 C -0.540 4.540 8 H 0.084 0.916 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.198 1.198 15 C -0.004 4.004 16 C -0.027 4.027 17 C -0.228 4.228 18 C -0.238 4.238 19 C -0.118 4.118 20 O -0.065 6.065 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.099 0.901 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.116 0.884 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.014 0.986 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -11.558 4.440 -4.407 13.142 hybrid contribution 0.320 -0.072 0.508 0.604 sum -11.238 4.369 -3.900 12.672 Atomic orbital electron populations 1.22680 0.82819 1.02199 0.98967 1.88136 1.17809 1.27233 1.95016 1.22716 0.95006 0.84870 0.98658 1.22023 0.91381 0.97939 0.95128 1.62076 1.23535 1.39571 0.99521 1.19828 0.79913 0.95663 0.97987 1.21183 0.92136 1.14284 1.26365 0.91550 1.24989 0.95969 0.97173 0.96581 1.69972 0.98184 1.41364 1.44512 0.86514 0.77260 0.82813 0.80926 1.20734 1.21450 1.19783 1.20535 1.01166 0.92185 0.86469 1.22351 0.84353 1.02033 0.93938 1.21366 0.99956 1.03665 0.97794 1.21702 0.95377 1.06116 1.00589 1.23865 0.96299 0.98856 0.92780 1.84082 1.36748 1.54901 1.30777 0.94941 0.94785 0.90114 0.93855 0.94053 0.88414 0.94382 0.94892 0.98645 0.93075 0.94030 0.89269 0.84187 0.84189 0.78854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.36 -6.40 10.65 -35.23 -0.38 -6.78 16 3 C 0.06 1.00 6.02 37.16 0.22 1.23 16 4 C 0.06 1.21 5.19 -3.83 -0.02 1.19 16 5 N -0.52 -11.50 4.32 -237.52 -1.03 -12.53 16 6 C 0.19 5.11 4.55 -4.97 -0.02 5.09 16 7 C -0.50 -14.54 8.37 -34.44 -0.29 -14.83 16 8 H 0.07 1.95 7.68 -52.49 -0.40 1.55 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 11 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 15 C 0.12 2.33 5.38 -4.98 -0.03 2.30 16 16 C 0.02 0.48 6.23 -35.62 -0.22 0.25 16 17 C -0.21 -3.66 10.81 -39.70 -0.43 -4.08 16 18 C -0.22 -3.49 10.91 -39.70 -0.43 -3.93 16 19 C -0.05 -0.82 12.09 29.42 0.36 -0.47 16 20 O -0.17 -3.44 9.99 5.69 0.06 -3.39 16 21 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.58 6.08 -51.93 -0.32 0.26 16 26 H 0.10 2.10 7.14 -51.93 -0.37 1.73 16 27 H 0.04 0.67 8.12 -51.93 -0.42 0.24 16 28 H 0.03 0.97 6.81 -51.93 -0.35 0.61 16 29 H 0.00 -0.12 8.06 -51.93 -0.42 -0.54 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.04 0.77 8.00 -51.93 -0.42 0.36 16 32 H 0.09 1.39 5.82 -51.93 -0.30 1.08 16 33 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.14 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.19 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -33.13 297.90 -6.08 -39.22 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.10 Total: -1.42 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 0.15 Total: -10.29 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.29 Total: -39.19 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.32 Total: -10.16 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.13 -6.08 -39.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046600823.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.240 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds