Wall clock time and date at job start Sun Mar 29 2020 22:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99419 * 2 1 4 4 C 1.53000 * 109.46813 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47073 * 65.00143 * 4 3 2 6 6 C 1.46902 * 111.00258 * 190.00003 * 5 4 3 7 7 C 1.50702 * 109.47090 * 71.24610 * 6 5 4 8 8 H 1.07998 * 120.00098 * 4.72116 * 7 6 5 9 9 C 1.37879 * 119.99918 * 184.71544 * 7 6 5 10 10 N 1.31520 * 120.00047 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99705 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47188 * 90.00378 * 11 9 7 13 13 H 1.48507 * 109.47055 * 210.00256 * 11 9 7 14 14 H 1.48501 * 109.47519 * 329.99945 * 11 9 7 15 15 C 1.46896 * 111.00152 * 66.04715 * 5 4 3 16 16 C 1.50706 * 109.47376 * 199.54051 * 15 5 4 17 17 C 1.34508 * 125.79206 * 89.99265 * 16 15 5 18 18 C 1.41385 * 106.84272 * 180.02562 * 17 16 15 19 19 C 1.34516 * 106.83852 * 0.02562 * 18 17 16 20 20 O 1.34304 * 108.42238 * 359.73882 * 19 18 17 21 21 H 1.09000 * 109.47132 * 299.99579 * 1 2 3 22 22 H 1.08998 * 109.47306 * 59.99983 * 1 2 3 23 23 H 1.09000 * 109.46838 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47109 * 60.00408 * 3 2 1 25 25 H 1.08996 * 109.47492 * 300.00229 * 3 2 1 26 26 H 1.08996 * 109.47296 * 304.99993 * 4 3 2 27 27 H 1.09002 * 109.46990 * 185.00224 * 4 3 2 28 28 H 1.08994 * 109.47660 * 191.25465 * 6 5 4 29 29 H 1.09002 * 109.46691 * 311.25257 * 6 5 4 30 30 H 0.96991 * 119.99837 * 179.97438 * 10 9 7 31 31 H 1.08996 * 109.47357 * 79.53728 * 15 5 4 32 32 H 1.08999 * 109.47196 * 319.53889 * 15 5 4 33 33 H 1.08001 * 126.57980 * 0.04568 * 17 16 15 34 34 H 1.07996 * 126.58215 * 179.97438 * 18 17 16 35 35 H 1.07995 * 125.78975 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9768 0.5630 -1.2561 6 6 5.4025 0.2140 -1.1980 7 6 5.5965 -0.9525 -0.2638 8 1 4.7394 -1.4394 0.1774 9 6 6.8683 -1.3981 0.0277 10 7 7.9122 -0.8049 -0.5092 11 14 7.1087 -2.8444 1.1852 12 1 7.1133 -4.1077 0.4046 13 1 8.4033 -2.6982 1.8979 14 1 6.0007 -2.8772 2.1734 15 6 3.6948 1.4358 -2.4036 16 6 3.7012 0.6187 -3.6699 17 6 2.6367 0.0017 -4.2133 18 6 3.0919 -0.6437 -5.3861 19 6 4.4075 -0.3827 -5.4888 20 8 4.7700 0.3868 -4.4495 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6885 1.8464 0.8901 25 1 1.6884 1.8465 -0.8899 26 1 3.8514 0.5684 0.8409 27 1 3.9783 2.1767 0.0890 28 1 5.7513 -0.0567 -2.1946 29 1 5.9714 1.0696 -0.8340 30 1 8.8068 -1.1182 -0.3038 31 1 4.4589 2.2105 -2.4672 32 1 2.7169 1.8997 -2.2755 33 1 1.6278 -0.0002 -3.8279 34 1 2.4976 -1.2336 -6.0681 35 1 5.0604 -0.7291 -6.2762 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046600823.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:50 Heat of formation + Delta-G solvation = -43.547892 kcal Electronic energy + Delta-G solvation = -17427.855147 eV Core-core repulsion = 14620.338327 eV Total energy + Delta-G solvation = -2807.516820 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.34757 -39.31107 -37.69349 -34.77406 -33.80138 -31.89469 -30.78385 -28.51987 -27.00777 -26.02191 -24.05456 -22.54352 -22.08014 -21.01340 -18.61480 -18.20908 -17.27665 -17.17398 -17.00566 -16.43612 -16.02297 -15.71449 -15.34822 -14.92190 -14.41608 -13.90641 -13.59447 -13.53913 -13.50309 -13.22740 -12.99875 -12.68602 -12.63013 -12.39187 -12.34310 -12.00118 -11.57026 -11.27847 -10.71762 -10.60106 -10.40317 -9.30712 -9.00025 -8.18565 -6.28141 0.91211 1.38890 1.40894 1.52528 1.82400 2.28166 2.40944 3.05517 3.13005 3.36875 3.87939 4.12134 4.22388 4.25519 4.33716 4.38127 4.45824 4.61120 4.64597 4.68494 4.73566 4.93870 4.99675 5.04678 5.10815 5.18399 5.29714 5.31382 5.66972 5.76121 6.07675 6.27638 6.39279 6.48076 6.62499 6.88297 7.40737 8.91910 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.009476 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.432837 B = 2953.996410 C = 4158.440143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.073 3.927 4 C 0.060 3.940 5 N -0.531 5.531 6 C 0.211 3.789 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.967 3.033 12 H -0.276 1.276 13 H -0.279 1.279 14 H -0.265 1.265 15 C 0.127 3.873 16 C -0.016 4.016 17 C -0.204 4.204 18 C -0.220 4.220 19 C -0.059 4.059 20 O -0.205 6.205 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.000 1.000 29 H -0.033 1.033 30 H 0.263 0.737 31 H 0.034 0.966 32 H 0.125 0.875 33 H 0.159 0.841 34 H 0.174 0.826 35 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.811 4.455 -4.468 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.003 4.003 4 C -0.068 4.068 5 N -0.256 5.256 6 C 0.085 3.915 7 C -0.555 4.555 8 H 0.076 0.924 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.791 3.209 12 H -0.202 1.202 13 H -0.204 1.204 14 H -0.189 1.189 15 C -0.001 4.001 16 C -0.066 4.066 17 C -0.224 4.224 18 C -0.239 4.239 19 C -0.126 4.126 20 O -0.102 6.102 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.103 0.897 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.018 0.982 29 H -0.015 1.015 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.143 0.857 33 H 0.176 0.824 34 H 0.192 0.808 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -13.498 3.979 -4.454 14.760 hybrid contribution 0.860 0.088 0.453 0.976 sum -12.638 4.067 -4.000 13.866 Atomic orbital electron populations 1.22874 0.80308 1.03175 1.00674 1.88069 1.20655 1.28360 1.95411 1.22647 0.91849 0.84811 1.01021 1.22077 0.94556 0.97515 0.92654 1.61965 1.19937 1.41813 1.01879 1.19375 0.82812 0.94039 0.95321 1.21417 0.92140 1.15054 1.26858 0.92434 1.25891 0.95567 1.00020 0.98181 1.70096 0.98696 1.42939 1.45790 0.85424 0.77630 0.79007 0.78808 1.20158 1.20419 1.18917 1.20642 1.02683 0.91520 0.85223 1.22604 0.85001 1.04150 0.94837 1.21726 1.00222 1.02468 0.97936 1.22128 0.95406 1.05876 1.00482 1.24724 0.97576 0.97817 0.92461 1.84056 1.37896 1.56131 1.32084 0.93021 0.93167 0.89655 0.90918 0.91970 0.91619 0.93143 0.98167 1.01487 0.92776 0.94749 0.85730 0.82376 0.80839 0.75493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -13.59 10.65 -148.98 -1.59 -15.18 16 3 C 0.07 2.12 6.02 71.98 0.43 2.56 16 4 C 0.06 2.28 5.19 86.30 0.45 2.73 16 5 N -0.53 -23.84 4.32 -905.38 -3.92 -27.76 16 6 C 0.21 11.82 4.55 85.56 0.39 12.21 16 7 C -0.52 -30.90 8.37 25.60 0.21 -30.68 16 8 H 0.06 3.47 7.68 -2.91 -0.02 3.45 16 9 C 0.00 0.06 5.46 84.65 0.46 0.52 16 10 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 11 Si 0.97 46.37 29.54 68.60 2.03 48.39 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 14 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 15 C 0.13 4.74 5.38 85.56 0.46 5.21 16 16 C -0.02 -0.61 6.23 24.83 0.15 -0.46 16 17 C -0.20 -6.85 10.81 22.19 0.24 -6.61 16 18 C -0.22 -6.57 10.91 22.19 0.24 -6.33 16 19 C -0.06 -1.88 12.09 66.97 0.81 -1.07 16 20 O -0.20 -8.47 9.99 -2.55 -0.03 -8.50 16 21 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.06 1.53 6.08 -2.39 -0.01 1.52 16 26 H 0.07 2.91 7.14 -2.39 -0.02 2.89 16 27 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 28 H 0.00 0.02 6.81 -2.39 -0.02 0.00 16 29 H -0.03 -1.95 8.06 -2.39 -0.02 -1.97 16 30 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.03 1.32 8.00 -2.39 -0.02 1.30 16 32 H 0.13 3.65 5.82 -2.39 -0.01 3.63 16 33 H 0.16 4.59 8.06 -2.91 -0.02 4.57 16 34 H 0.17 3.87 8.06 -2.91 -0.02 3.85 16 35 H 0.23 5.22 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -73.91 297.90 2.95 -70.96 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.06 Total: 10.19 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 5.10 Total: -20.11 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -3.63 Total: -85.77 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -1.61 Total: -23.67 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -73.91 2.95 -70.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046600823.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.413 kcal (2) G-P(sol) polarization free energy of solvation -73.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds