Wall clock time and date at job start Sun Mar 29 2020 22:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47378 * 2 1 4 4 C 1.42891 * 114.00390 * 179.97438 * 3 2 1 5 5 H 1.09005 * 115.56296 * 355.69081 * 4 3 2 6 6 C 1.53002 * 117.50191 * 141.37894 * 4 3 2 7 7 C 1.52996 * 60.00042 * 107.49309 * 6 4 3 8 8 H 1.09008 * 117.49737 * 252.49276 * 7 6 4 9 9 C 1.50699 * 117.50100 * 107.49354 * 7 6 4 10 10 O 1.21289 * 119.99705 * 291.39375 * 9 7 6 11 11 N 1.34776 * 120.00181 * 111.11086 * 9 7 6 12 12 C 1.37098 * 120.00164 * 180.02562 * 11 9 7 13 13 H 1.07994 * 120.00092 * 224.55416 * 12 11 9 14 14 C 1.38946 * 119.99544 * 44.55538 * 12 11 9 15 15 N 1.31404 * 120.00419 * 18.06919 * 14 12 11 16 16 Si 1.86803 * 119.99681 * 198.06488 * 14 12 11 17 17 H 1.48508 * 109.47016 * 90.00168 * 16 14 12 18 18 H 1.48497 * 109.47459 * 209.99855 * 16 14 12 19 19 H 1.48497 * 109.47369 * 330.00337 * 16 14 12 20 20 C 1.46507 * 119.99818 * 0.02562 * 11 9 7 21 21 C 1.53000 * 117.49828 * 183.28001 * 20 11 9 22 22 C 1.52999 * 117.50103 * 114.62057 * 20 11 9 23 23 H 1.09009 * 109.47372 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47375 * 299.99820 * 1 2 3 25 25 H 1.08998 * 109.47154 * 59.99906 * 1 2 3 26 26 H 1.08999 * 109.47137 * 239.99757 * 2 1 3 27 27 H 1.08998 * 109.47154 * 120.00094 * 2 1 3 28 28 H 1.09004 * 117.49731 * 0.02562 * 6 4 3 29 29 H 1.08996 * 117.50315 * 214.97861 * 6 4 3 30 30 H 0.97006 * 120.00360 * 174.96495 * 15 14 12 31 31 H 1.08997 * 115.54496 * 328.94427 * 20 11 9 32 32 H 1.09006 * 117.49625 * 359.97438 * 21 20 11 33 33 H 1.08993 * 117.50196 * 145.01405 * 21 20 11 34 34 H 1.09005 * 117.49723 * 214.97756 * 22 20 11 35 35 H 1.08996 * 117.49392 * 359.96859 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9771 0.5197 0.0748 6 6 4.0517 2.5727 -0.8464 7 6 4.0420 2.6876 0.6792 8 1 3.3577 3.4094 1.1253 9 6 5.3531 2.5040 1.3992 10 8 5.8835 1.4136 1.4246 11 7 5.9391 3.5528 2.0100 12 6 7.1321 3.3860 2.6646 13 1 7.2785 3.8244 3.6406 14 6 8.1529 2.6528 2.0721 15 7 8.1313 2.4227 0.7786 16 14 9.5561 1.9942 3.1146 17 1 9.2089 0.6390 3.6129 18 1 10.7903 1.9179 2.2923 19 1 9.7848 2.9019 4.2674 20 6 5.3012 4.8713 1.9745 21 6 6.0526 6.0373 2.6199 22 6 4.8116 5.4552 3.3012 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.3736 3.2190 -1.4038 29 1 5.0064 2.3645 -1.3293 30 1 8.8790 1.9746 0.3530 31 1 4.7117 5.0843 1.0828 32 1 7.0215 5.8234 3.0714 33 1 5.9573 7.0175 2.1531 34 1 3.9002 6.0529 3.2823 35 1 4.9637 4.8583 4.2004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230687.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:38 Heat of formation + Delta-G solvation = -13.943125 kcal Electronic energy + Delta-G solvation = -17416.353681 eV Core-core repulsion = 14610.120620 eV Total energy + Delta-G solvation = -2806.233061 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.01251 -37.73549 -36.11333 -34.41644 -32.67166 -30.88436 -30.55448 -25.64201 -22.86521 -22.69186 -21.63252 -21.57750 -20.97429 -18.87561 -17.19701 -16.05720 -15.86572 -15.35063 -14.87220 -14.55577 -14.18077 -13.66017 -13.19525 -13.07321 -12.51806 -12.41094 -12.28539 -11.83708 -11.41773 -11.02863 -11.01289 -10.90755 -10.83037 -10.68845 -10.64711 -10.20590 -9.93361 -9.74002 -9.69090 -8.82990 -8.62695 -8.00325 -7.00417 -6.09807 -3.85426 3.31193 3.38215 3.41176 3.66518 3.88391 4.27836 4.53990 4.83053 4.95929 5.12940 5.22788 5.31928 5.41359 5.46108 5.58247 5.59144 5.67036 5.81088 5.82632 5.84835 5.95467 6.05681 6.15735 6.19321 6.26623 6.30058 6.49660 6.64785 6.80407 6.97068 7.55764 7.63709 8.29781 9.08652 9.18201 9.68109 10.32581 10.99431 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.024115 B = 0.007418 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.812118 B = 3773.585014 C = 4489.760818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.362 6.362 4 C 0.040 3.960 5 H 0.120 0.880 6 C -0.161 4.161 7 C -0.171 4.171 8 H 0.112 0.888 9 C 0.513 3.487 10 O -0.536 6.536 11 N -0.423 5.423 12 C -0.348 4.348 13 H 0.078 0.922 14 C 0.074 3.926 15 N -0.834 5.834 16 Si 0.913 3.087 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.078 3.922 21 C -0.174 4.174 22 C -0.209 4.209 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.264 0.736 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.068 0.965 -1.632 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.281 6.281 4 C -0.018 4.018 5 H 0.137 0.863 6 C -0.199 4.199 7 C -0.193 4.193 8 H 0.130 0.870 9 C 0.300 3.700 10 O -0.414 6.414 11 N -0.143 5.143 12 C -0.475 4.475 13 H 0.095 0.905 14 C -0.137 4.137 15 N -0.468 5.468 16 Si 0.740 3.260 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.029 4.029 21 C -0.212 4.212 22 C -0.248 4.248 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.826 0.393 -1.770 9.992 hybrid contribution 0.838 -0.279 0.409 0.973 sum -8.988 0.114 -1.362 9.092 Atomic orbital electron populations 1.21742 0.94033 1.01987 1.02930 1.22480 0.95019 0.84017 1.00372 1.87751 1.19745 1.26341 1.94243 1.22610 0.80545 0.94985 1.03660 0.86276 1.23338 1.02376 1.01610 0.92578 1.22803 0.99196 1.01603 0.95698 0.87009 1.18854 0.83944 0.84657 0.82504 1.90508 1.64474 1.25387 1.61079 1.42641 1.19019 1.02980 1.49692 1.18867 0.90228 1.37833 1.00582 0.90467 1.25243 0.97483 0.96148 0.94817 1.69826 1.30337 1.37384 1.09215 0.86206 0.80119 0.79839 0.79812 1.20354 1.21289 1.19868 1.21674 1.00195 0.86554 0.94439 1.23073 0.97355 0.96363 1.04360 1.23326 0.97647 1.05016 0.98809 0.91267 0.91915 0.92037 0.93346 0.93114 0.88560 0.87565 0.92643 0.87834 0.87528 0.89819 0.89801 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.20 16 2 C 0.06 0.78 6.53 37.16 0.24 1.03 16 3 O -0.36 -6.19 10.60 -35.23 -0.37 -6.57 16 4 C 0.04 0.76 5.96 -26.73 -0.16 0.61 16 5 H 0.12 2.40 7.45 -51.93 -0.39 2.01 16 6 C -0.16 -2.99 10.18 -26.73 -0.27 -3.27 16 7 C -0.17 -3.57 4.89 -91.77 -0.45 -4.02 16 8 H 0.11 2.15 7.32 -51.92 -0.38 1.77 16 9 C 0.51 13.38 6.75 -10.99 -0.07 13.30 16 10 O -0.54 -16.00 14.02 5.55 0.08 -15.92 16 11 N -0.42 -10.87 2.83 -107.73 -0.31 -11.17 16 12 C -0.35 -9.64 7.91 -14.93 -0.12 -9.76 16 13 H 0.08 2.07 7.27 -52.49 -0.38 1.69 16 14 C 0.07 2.08 4.39 -17.47 -0.08 2.01 16 15 N -0.83 -24.80 11.75 55.50 0.65 -24.15 16 16 Si 0.91 22.08 29.59 -169.99 -5.03 17.05 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 20 C 0.08 1.61 5.62 -67.93 -0.38 1.23 16 21 C -0.17 -3.22 9.80 -26.69 -0.26 -3.48 16 22 C -0.21 -3.71 10.36 -26.69 -0.28 -3.98 16 23 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.11 2.13 8.14 -51.93 -0.42 1.71 16 30 H 0.26 7.49 8.32 -40.82 -0.34 7.15 16 31 H 0.10 1.97 7.12 -51.93 -0.37 1.60 16 32 H 0.11 2.17 6.73 -51.93 -0.35 1.82 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 298.42 15.07 4.50 4.50 Total: -1.00 -32.52 298.42 -7.16 -39.67 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.23 Total: 4.14 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.44 Total: -7.54 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.35 Total: -35.32 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.30 Total: -22.49 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.52 -7.16 -39.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230687.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.730 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds