Wall clock time and date at job start Sun Mar 29 2020 22:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47378 * 2 1 4 4 C 1.42891 * 114.00390 * 179.97438 * 3 2 1 5 5 H 1.09005 * 115.56296 * 355.69081 * 4 3 2 6 6 C 1.53002 * 117.50191 * 141.37894 * 4 3 2 7 7 C 1.52996 * 60.00042 * 107.49309 * 6 4 3 8 8 H 1.09008 * 117.49737 * 252.49276 * 7 6 4 9 9 C 1.50699 * 117.50100 * 107.49354 * 7 6 4 10 10 O 1.21289 * 119.99705 * 291.39375 * 9 7 6 11 11 N 1.34776 * 120.00181 * 111.11086 * 9 7 6 12 12 C 1.37098 * 120.00164 * 180.02562 * 11 9 7 13 13 H 1.07994 * 120.00092 * 224.55416 * 12 11 9 14 14 C 1.38946 * 119.99544 * 44.55538 * 12 11 9 15 15 N 1.31404 * 120.00419 * 18.06919 * 14 12 11 16 16 Si 1.86803 * 119.99681 * 198.06488 * 14 12 11 17 17 H 1.48508 * 109.47016 * 90.00168 * 16 14 12 18 18 H 1.48497 * 109.47459 * 209.99855 * 16 14 12 19 19 H 1.48497 * 109.47369 * 330.00337 * 16 14 12 20 20 C 1.46507 * 119.99818 * 0.02562 * 11 9 7 21 21 C 1.53000 * 117.49828 * 183.28001 * 20 11 9 22 22 C 1.52999 * 117.50103 * 114.62057 * 20 11 9 23 23 H 1.09009 * 109.47372 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47375 * 299.99820 * 1 2 3 25 25 H 1.08998 * 109.47154 * 59.99906 * 1 2 3 26 26 H 1.08999 * 109.47137 * 239.99757 * 2 1 3 27 27 H 1.08998 * 109.47154 * 120.00094 * 2 1 3 28 28 H 1.09004 * 117.49731 * 0.02562 * 6 4 3 29 29 H 1.08996 * 117.50315 * 214.97861 * 6 4 3 30 30 H 0.97006 * 120.00360 * 174.96495 * 15 14 12 31 31 H 1.08997 * 115.54496 * 328.94427 * 20 11 9 32 32 H 1.09006 * 117.49625 * 359.97438 * 21 20 11 33 33 H 1.08993 * 117.50196 * 145.01405 * 21 20 11 34 34 H 1.09005 * 117.49723 * 214.97756 * 22 20 11 35 35 H 1.08996 * 117.49392 * 359.96859 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9771 0.5197 0.0748 6 6 4.0517 2.5727 -0.8464 7 6 4.0420 2.6876 0.6792 8 1 3.3577 3.4094 1.1253 9 6 5.3531 2.5040 1.3992 10 8 5.8835 1.4136 1.4246 11 7 5.9391 3.5528 2.0100 12 6 7.1321 3.3860 2.6646 13 1 7.2785 3.8244 3.6406 14 6 8.1529 2.6528 2.0721 15 7 8.1313 2.4227 0.7786 16 14 9.5561 1.9942 3.1146 17 1 9.2089 0.6390 3.6129 18 1 10.7903 1.9179 2.2923 19 1 9.7848 2.9019 4.2674 20 6 5.3012 4.8713 1.9745 21 6 6.0526 6.0373 2.6199 22 6 4.8116 5.4552 3.3012 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.3736 3.2190 -1.4038 29 1 5.0064 2.3645 -1.3293 30 1 8.8790 1.9746 0.3530 31 1 4.7117 5.0843 1.0828 32 1 7.0215 5.8234 3.0714 33 1 5.9573 7.0175 2.1531 34 1 3.9002 6.0529 3.2823 35 1 4.9637 4.8583 4.2004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068230687.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:37 Heat of formation + Delta-G solvation = -34.690772 kcal Electronic energy + Delta-G solvation = -17417.253366 eV Core-core repulsion = 14610.120620 eV Total energy + Delta-G solvation = -2807.132746 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76018 -39.22972 -37.78505 -35.97480 -34.66084 -32.80113 -31.66117 -27.64648 -24.61958 -23.77203 -23.09872 -23.03633 -22.67525 -20.74441 -18.79605 -17.91075 -17.52008 -16.63934 -16.48327 -16.34949 -15.71289 -15.47890 -14.87872 -14.78464 -13.92632 -13.68356 -13.54345 -13.24958 -13.07878 -12.86798 -12.82969 -12.69640 -12.24652 -12.13276 -12.06674 -11.85246 -11.66249 -11.37750 -11.22746 -10.76100 -10.19542 -9.95867 -8.99029 -8.21347 -6.00501 1.34938 1.43414 1.48382 2.06877 2.23706 2.43147 2.92704 3.10806 3.20161 3.43524 3.85905 3.96438 4.08117 4.14475 4.18692 4.22855 4.31466 4.40123 4.47642 4.51212 4.56189 4.78871 4.89234 4.94238 5.02965 5.03540 5.11008 5.27877 5.28756 5.45871 5.49476 6.19128 6.22547 7.02049 7.17764 7.67683 8.33762 8.87534 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.024115 B = 0.007418 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.812118 B = 3773.585014 C = 4489.760818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 O -0.365 6.365 4 C 0.051 3.949 5 H 0.100 0.900 6 C -0.142 4.142 7 C -0.180 4.180 8 H 0.132 0.868 9 C 0.497 3.503 10 O -0.590 6.590 11 N -0.438 5.438 12 C -0.359 4.359 13 H 0.078 0.922 14 C 0.022 3.978 15 N -0.871 5.871 16 Si 0.971 3.029 17 H -0.291 1.291 18 H -0.279 1.279 19 H -0.253 1.253 20 C 0.043 3.957 21 C -0.168 4.168 22 C -0.182 4.182 23 H 0.094 0.906 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.131 0.869 29 H 0.085 0.915 30 H 0.260 0.740 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.770 2.235 -1.509 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 O -0.284 6.284 4 C -0.007 4.007 5 H 0.118 0.882 6 C -0.180 4.180 7 C -0.202 4.202 8 H 0.150 0.850 9 C 0.286 3.714 10 O -0.473 6.473 11 N -0.157 5.157 12 C -0.486 4.486 13 H 0.096 0.904 14 C -0.184 4.184 15 N -0.506 5.506 16 Si 0.796 3.204 17 H -0.218 1.218 18 H -0.204 1.204 19 H -0.177 1.177 20 C -0.062 4.062 21 C -0.205 4.205 22 C -0.220 4.220 23 H 0.113 0.887 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.149 0.851 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.546 1.718 -1.627 11.786 hybrid contribution 1.281 -0.664 0.411 1.500 sum -10.265 1.054 -1.216 10.391 Atomic orbital electron populations 1.21748 0.91381 1.03750 1.03101 1.22811 0.97112 0.82474 1.00675 1.87745 1.17961 1.28550 1.94169 1.22356 0.81681 0.93804 1.02896 0.88220 1.23330 1.01984 1.01590 0.91090 1.22633 0.97172 1.03648 0.96755 0.84987 1.19694 0.85292 0.84057 0.82308 1.90457 1.66373 1.27355 1.63102 1.42883 1.18654 1.05027 1.49160 1.19127 0.91051 1.37551 1.00885 0.90409 1.26076 1.00177 0.96413 0.95780 1.69935 1.31107 1.38769 1.10761 0.85300 0.77556 0.78535 0.78992 1.21826 1.20438 1.17702 1.21995 1.02082 0.85020 0.97054 1.23127 0.96574 0.97001 1.03806 1.23341 0.98857 1.03718 0.96123 0.88741 0.92117 0.91446 0.92332 0.93672 0.85088 0.89659 0.93099 0.85895 0.89988 0.86358 0.85741 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 10.28 71.98 0.74 -1.93 16 2 C 0.05 1.16 6.53 71.98 0.47 1.63 16 3 O -0.37 -11.92 10.60 -148.98 -1.58 -13.50 16 4 C 0.05 1.94 5.96 30.60 0.18 2.12 16 5 H 0.10 4.15 7.45 -2.38 -0.02 4.13 16 6 C -0.14 -5.14 10.18 30.59 0.31 -4.83 16 7 C -0.18 -7.43 4.89 -11.54 -0.06 -7.49 16 8 H 0.13 4.83 7.32 -2.38 -0.02 4.81 16 9 C 0.50 26.48 6.75 87.66 0.59 27.07 16 10 O -0.59 -36.70 14.02 -3.06 -0.04 -36.75 16 11 N -0.44 -22.70 2.83 -613.13 -1.74 -24.44 16 12 C -0.36 -20.22 7.91 84.04 0.66 -19.55 16 13 H 0.08 4.24 7.27 -2.91 -0.02 4.22 16 14 C 0.02 1.26 4.39 84.93 0.37 1.63 16 15 N -0.87 -53.48 11.75 21.66 0.25 -53.23 16 16 Si 0.97 46.27 29.59 68.60 2.03 48.30 16 17 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.25 -11.07 7.11 99.48 0.71 -10.37 16 20 C 0.04 1.74 5.62 44.99 0.25 1.99 16 21 C -0.17 -5.86 9.80 30.62 0.30 -5.56 16 22 C -0.18 -5.95 10.36 30.62 0.32 -5.63 16 23 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.13 3.80 8.14 -2.38 -0.02 3.78 16 29 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 30 H 0.26 15.33 8.32 -92.70 -0.77 14.56 16 31 H 0.12 4.39 7.12 -2.39 -0.02 4.37 16 32 H 0.08 3.29 6.73 -2.38 -0.02 3.27 16 33 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 34 H 0.12 3.10 8.14 -2.38 -0.02 3.08 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -72.72 298.42 4.14 -68.58 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 1.07 Total: 21.57 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 4.15 Total: -10.54 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -1.48 Total: -77.67 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -1.62 Total: -50.24 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -72.72 4.14 -68.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230687.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.889 kcal (2) G-P(sol) polarization free energy of solvation -72.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds