Wall clock time and date at job start Sun Mar 29 2020 22:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47136 * 2 1 4 4 C 1.42905 * 113.99906 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.54963 * 4.41966 * 4 3 2 6 6 C 1.53001 * 117.49938 * 218.74789 * 4 3 2 7 7 C 1.53001 * 117.49816 * 150.08887 * 4 3 2 8 8 H 1.09004 * 117.49788 * 0.02562 * 7 4 3 9 9 C 1.50696 * 117.49959 * 215.00194 * 7 4 3 10 10 O 1.21292 * 120.00225 * 0.02562 * 9 7 4 11 11 N 1.34779 * 120.00024 * 179.97438 * 9 7 4 12 12 C 1.37099 * 119.99603 * 179.97438 * 11 9 7 13 13 H 1.07995 * 120.00046 * 222.68133 * 12 11 9 14 14 C 1.38950 * 119.99957 * 42.69161 * 12 11 9 15 15 N 1.31414 * 120.00098 * 19.30869 * 14 12 11 16 16 Si 1.86799 * 119.99939 * 199.30754 * 14 12 11 17 17 H 1.48504 * 109.46882 * 60.00129 * 16 14 12 18 18 H 1.48503 * 109.47288 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47482 * 300.00232 * 16 14 12 20 20 C 1.46493 * 119.99961 * 0.02562 * 11 9 7 21 21 C 1.52999 * 117.49930 * 183.28301 * 20 11 9 22 22 C 1.53002 * 117.50161 * 114.62441 * 20 11 9 23 23 H 1.09001 * 109.46975 * 299.99559 * 1 2 3 24 24 H 1.08995 * 109.47639 * 59.99524 * 1 2 3 25 25 H 1.09004 * 109.46915 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46975 * 240.00441 * 2 1 3 27 27 H 1.08995 * 109.47639 * 120.00476 * 2 1 3 28 28 H 1.09008 * 117.49699 * 359.97438 * 6 4 3 29 29 H 1.08995 * 117.50333 * 144.97247 * 6 4 3 30 30 H 0.96996 * 120.00274 * 174.85238 * 15 14 12 31 31 H 1.08997 * 115.55072 * 328.95251 * 20 11 9 32 32 H 1.09000 * 117.49986 * 0.02562 * 21 20 11 33 33 H 1.09003 * 117.50118 * 145.01621 * 21 20 11 34 34 H 1.08997 * 117.50306 * 214.98211 * 22 20 11 35 35 H 1.09005 * 117.49659 * 359.97214 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9769 0.5198 -0.0767 6 6 4.0520 2.5709 0.8487 7 6 4.0420 2.6887 -0.6774 8 1 3.3573 3.4111 -1.1219 9 6 5.3527 2.5061 -1.3983 10 8 5.8826 1.4155 -1.4265 11 7 5.9357 3.5547 -2.0125 12 6 7.1284 3.3886 -2.6679 13 1 7.9089 4.1278 -2.5643 14 6 7.3329 2.2694 -3.4656 15 7 6.3048 1.5773 -3.9027 16 14 9.0692 1.7486 -3.9166 17 1 9.8341 1.4517 -2.6789 18 1 9.0159 0.5334 -4.7686 19 1 9.7378 2.8463 -4.6604 20 6 5.2954 4.8718 -1.9790 21 6 5.9669 6.0038 -2.7591 22 6 6.0209 5.9911 -1.2294 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.3739 3.2159 1.4077 29 1 5.0063 2.3613 1.3317 30 1 6.4424 0.8415 -4.5195 31 1 4.2061 4.8642 -1.9405 32 1 6.8848 5.7684 -3.2978 33 1 5.3193 6.7411 -3.2337 34 1 5.4090 6.7201 -0.6982 35 1 6.9745 5.7473 -0.7609 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230688.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:40 Heat of formation + Delta-G solvation = -11.866425 kcal Electronic energy + Delta-G solvation = -17423.624081 eV Core-core repulsion = 14617.481073 eV Total energy + Delta-G solvation = -2806.143008 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.01222 -37.72551 -36.10907 -34.42888 -32.65142 -30.88337 -30.53047 -25.66109 -22.84351 -22.67194 -21.71101 -21.54582 -21.00764 -18.84339 -17.23810 -16.04745 -15.88238 -15.32426 -14.89120 -14.56685 -14.02280 -13.67840 -13.44295 -12.88884 -12.49089 -12.45911 -12.15226 -11.97390 -11.48438 -11.02941 -10.95555 -10.86823 -10.83798 -10.69505 -10.59605 -10.20499 -9.93715 -9.81721 -9.66064 -8.80601 -8.64487 -7.98621 -7.00557 -6.08799 -3.82957 3.31022 3.38533 3.41737 3.67354 3.90039 4.30462 4.53891 4.80374 4.96103 5.15629 5.26018 5.27717 5.39535 5.46149 5.57231 5.60159 5.66684 5.80554 5.84355 5.92463 5.99184 6.02297 6.10088 6.16681 6.24240 6.26917 6.50651 6.59854 6.80134 6.96251 7.57066 7.63369 8.28886 9.08287 9.18928 9.68897 10.33385 11.00092 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.007702 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.132028 B = 3634.444579 C = 4460.190291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.362 6.362 4 C 0.041 3.959 5 H 0.120 0.880 6 C -0.165 4.165 7 C -0.166 4.166 8 H 0.111 0.889 9 C 0.510 3.490 10 O -0.536 6.536 11 N -0.421 5.421 12 C -0.351 4.351 13 H 0.078 0.922 14 C 0.073 3.927 15 N -0.830 5.830 16 Si 0.914 3.086 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.077 3.923 21 C -0.176 4.176 22 C -0.206 4.206 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.264 0.736 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 2.193 6.250 9.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.280 6.280 4 C -0.017 4.017 5 H 0.137 0.863 6 C -0.202 4.202 7 C -0.188 4.188 8 H 0.129 0.871 9 C 0.297 3.703 10 O -0.414 6.414 11 N -0.141 5.141 12 C -0.477 4.477 13 H 0.096 0.904 14 C -0.138 4.138 15 N -0.463 5.463 16 Si 0.741 3.259 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.204 1.204 20 C -0.029 4.029 21 C -0.214 4.214 22 C -0.245 4.245 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.233 1.548 6.149 9.620 hybrid contribution 0.818 -0.288 -0.424 0.965 sum -6.416 1.261 5.725 8.691 Atomic orbital electron populations 1.21740 0.94039 1.01988 1.02912 1.22483 0.95025 0.83978 1.00392 1.87752 1.19663 1.26404 1.94220 1.22617 0.80739 0.95031 1.03331 0.86292 1.23349 1.02185 1.02064 0.92651 1.22766 0.99292 1.01570 0.95185 0.87107 1.18805 0.85207 0.85279 0.80993 1.90507 1.64778 1.24706 1.61414 1.42658 1.20456 1.04525 1.46475 1.18827 0.90770 1.09456 1.28690 0.90417 1.25227 0.97681 0.96606 0.94277 1.69840 1.30494 1.19010 1.26964 0.86261 0.83573 0.77920 0.78165 1.19984 1.21214 1.20369 1.21696 0.94713 0.83032 1.03438 1.23088 1.04031 1.00541 0.93694 1.23301 1.03263 1.03127 0.94785 0.92085 0.91876 0.91264 0.92980 0.93419 0.88406 0.88140 0.92564 0.87910 0.87540 0.89820 0.89807 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.28 16 2 C 0.06 0.82 6.53 37.16 0.24 1.06 16 3 O -0.36 -6.34 10.60 -35.23 -0.37 -6.72 16 4 C 0.04 0.78 5.95 -26.73 -0.16 0.63 16 5 H 0.12 2.40 7.45 -51.93 -0.39 2.02 16 6 C -0.16 -2.88 10.19 -26.69 -0.27 -3.15 16 7 C -0.17 -3.48 5.26 -91.74 -0.48 -3.96 16 8 H 0.11 2.19 6.60 -51.93 -0.34 1.85 16 9 C 0.51 13.31 6.76 -10.99 -0.07 13.24 16 10 O -0.54 -16.00 13.90 5.55 0.08 -15.92 16 11 N -0.42 -10.82 2.85 -107.74 -0.31 -11.13 16 12 C -0.35 -9.71 7.99 -14.93 -0.12 -9.83 16 13 H 0.08 2.07 7.19 -52.49 -0.38 1.69 16 14 C 0.07 2.08 4.35 -17.47 -0.08 2.00 16 15 N -0.83 -24.99 11.67 55.50 0.65 -24.35 16 16 Si 0.91 22.14 29.60 -169.99 -5.03 17.11 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.08 1.61 5.90 -67.93 -0.40 1.21 16 21 C -0.18 -3.25 9.80 -26.70 -0.26 -3.51 16 22 C -0.21 -3.62 10.36 -26.69 -0.28 -3.89 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.10 1.48 8.14 -51.92 -0.42 1.05 16 29 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 30 H 0.26 7.62 8.32 -40.82 -0.34 7.28 16 31 H 0.10 1.95 6.47 -51.93 -0.34 1.62 16 32 H 0.11 2.16 6.69 -51.93 -0.35 1.82 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 297.42 15.07 4.48 4.48 Total: -1.00 -32.82 297.42 -7.15 -39.98 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.15 Total: 4.04 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.50 Total: -7.49 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.34 Total: -35.48 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.30 Total: -22.63 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.82 -7.15 -39.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230688.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.110 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds