Wall clock time and date at job start Sun Mar 29 2020 22:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47136 * 2 1 4 4 C 1.42905 * 113.99906 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.54963 * 4.41966 * 4 3 2 6 6 C 1.53001 * 117.49938 * 218.74789 * 4 3 2 7 7 C 1.53001 * 117.49816 * 150.08887 * 4 3 2 8 8 H 1.09004 * 117.49788 * 0.02562 * 7 4 3 9 9 C 1.50696 * 117.49959 * 215.00194 * 7 4 3 10 10 O 1.21292 * 120.00225 * 0.02562 * 9 7 4 11 11 N 1.34779 * 120.00024 * 179.97438 * 9 7 4 12 12 C 1.37099 * 119.99603 * 179.97438 * 11 9 7 13 13 H 1.07995 * 120.00046 * 222.68133 * 12 11 9 14 14 C 1.38950 * 119.99957 * 42.69161 * 12 11 9 15 15 N 1.31414 * 120.00098 * 19.30869 * 14 12 11 16 16 Si 1.86799 * 119.99939 * 199.30754 * 14 12 11 17 17 H 1.48504 * 109.46882 * 60.00129 * 16 14 12 18 18 H 1.48503 * 109.47288 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47482 * 300.00232 * 16 14 12 20 20 C 1.46493 * 119.99961 * 0.02562 * 11 9 7 21 21 C 1.52999 * 117.49930 * 183.28301 * 20 11 9 22 22 C 1.53002 * 117.50161 * 114.62441 * 20 11 9 23 23 H 1.09001 * 109.46975 * 299.99559 * 1 2 3 24 24 H 1.08995 * 109.47639 * 59.99524 * 1 2 3 25 25 H 1.09004 * 109.46915 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46975 * 240.00441 * 2 1 3 27 27 H 1.08995 * 109.47639 * 120.00476 * 2 1 3 28 28 H 1.09008 * 117.49699 * 359.97438 * 6 4 3 29 29 H 1.08995 * 117.50333 * 144.97247 * 6 4 3 30 30 H 0.96996 * 120.00274 * 174.85238 * 15 14 12 31 31 H 1.08997 * 115.55072 * 328.95251 * 20 11 9 32 32 H 1.09000 * 117.49986 * 0.02562 * 21 20 11 33 33 H 1.09003 * 117.50118 * 145.01621 * 21 20 11 34 34 H 1.08997 * 117.50306 * 214.98211 * 22 20 11 35 35 H 1.09005 * 117.49659 * 359.97214 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9769 0.5198 -0.0767 6 6 4.0520 2.5709 0.8487 7 6 4.0420 2.6887 -0.6774 8 1 3.3573 3.4111 -1.1219 9 6 5.3527 2.5061 -1.3983 10 8 5.8826 1.4155 -1.4265 11 7 5.9357 3.5547 -2.0125 12 6 7.1284 3.3886 -2.6679 13 1 7.9089 4.1278 -2.5643 14 6 7.3329 2.2694 -3.4656 15 7 6.3048 1.5773 -3.9027 16 14 9.0692 1.7486 -3.9166 17 1 9.8341 1.4517 -2.6789 18 1 9.0159 0.5334 -4.7686 19 1 9.7378 2.8463 -4.6604 20 6 5.2954 4.8718 -1.9790 21 6 5.9669 6.0038 -2.7591 22 6 6.0209 5.9911 -1.2294 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.3739 3.2159 1.4077 29 1 5.0063 2.3613 1.3317 30 1 6.4424 0.8415 -4.5195 31 1 4.2061 4.8642 -1.9405 32 1 6.8848 5.7684 -3.2978 33 1 5.3193 6.7411 -3.2337 34 1 5.4090 6.7201 -0.6982 35 1 6.9745 5.7473 -0.7609 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068230688.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:39 Heat of formation + Delta-G solvation = -32.995004 kcal Electronic energy + Delta-G solvation = -17424.540285 eV Core-core repulsion = 14617.481073 eV Total energy + Delta-G solvation = -2807.059212 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75178 -39.22346 -37.77804 -35.97998 -34.63973 -32.80359 -31.66868 -27.65991 -24.59241 -23.78382 -23.16203 -22.98144 -22.69991 -20.70716 -18.84108 -17.91430 -17.50219 -16.61523 -16.49038 -16.41914 -15.56573 -15.44292 -15.15368 -14.58693 -13.92252 -13.68650 -13.59288 -13.34092 -13.04410 -12.82560 -12.77032 -12.65998 -12.24342 -12.16357 -12.08935 -11.86457 -11.66007 -11.40511 -11.20375 -10.73871 -10.18563 -9.93723 -8.99520 -8.21287 -5.98607 1.35086 1.44191 1.47838 2.05452 2.32118 2.42676 2.96203 3.11476 3.16849 3.41046 3.84613 3.96534 4.09553 4.12743 4.19035 4.24254 4.32896 4.39030 4.45124 4.50292 4.56748 4.78620 4.90183 4.94226 5.02293 5.05140 5.09615 5.26201 5.29325 5.45262 5.49541 6.18157 6.22374 7.01448 7.18675 7.68384 8.34965 8.87458 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.007702 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.132028 B = 3634.444579 C = 4460.190291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 O -0.368 6.368 4 C 0.042 3.958 5 H 0.099 0.901 6 C -0.130 4.130 7 C -0.184 4.184 8 H 0.122 0.878 9 C 0.495 3.505 10 O -0.590 6.590 11 N -0.437 5.437 12 C -0.360 4.360 13 H 0.081 0.919 14 C 0.019 3.981 15 N -0.871 5.871 16 Si 0.973 3.027 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.255 1.255 20 C 0.042 3.958 21 C -0.171 4.171 22 C -0.175 4.175 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.133 0.867 29 H 0.098 0.902 30 H 0.259 0.741 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.235 3.784 7.449 11.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 O -0.287 6.287 4 C -0.017 4.017 5 H 0.117 0.883 6 C -0.168 4.168 7 C -0.205 4.205 8 H 0.140 0.860 9 C 0.284 3.716 10 O -0.472 6.472 11 N -0.156 5.156 12 C -0.487 4.487 13 H 0.099 0.901 14 C -0.187 4.187 15 N -0.506 5.506 16 Si 0.798 3.202 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.179 1.179 20 C -0.063 4.063 21 C -0.209 4.209 22 C -0.214 4.214 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.113 0.887 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.151 0.849 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.145 3.200 7.347 11.426 hybrid contribution 1.061 -0.737 -0.752 1.495 sum -7.084 2.463 6.595 9.987 Atomic orbital electron populations 1.21747 0.91422 1.03745 1.03059 1.22786 0.97109 0.82540 1.00518 1.87738 1.18271 1.28456 1.94223 1.22450 0.81670 0.94044 1.03506 0.88348 1.23411 1.02370 1.00715 0.90281 1.22589 0.97187 1.03534 0.97222 0.85971 1.19650 0.86637 0.84646 0.80663 1.90455 1.66679 1.26667 1.63396 1.42902 1.20310 1.06498 1.45893 1.19122 0.92135 1.09400 1.28041 0.90130 1.26096 1.01220 0.96751 0.94606 1.69965 1.32517 1.19762 1.28362 0.85328 0.79195 0.78018 0.77659 1.20634 1.21342 1.17886 1.22003 0.95774 0.81482 1.07010 1.23146 1.03201 0.99921 0.94603 1.23312 1.02396 1.01359 0.94304 0.91146 0.92459 0.88738 0.94333 0.91935 0.84922 0.88335 0.93168 0.86198 0.89979 0.86474 0.85714 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 10.28 71.98 0.74 -2.13 16 2 C 0.05 1.27 6.53 71.98 0.47 1.74 16 3 O -0.37 -12.47 10.60 -148.98 -1.58 -14.05 16 4 C 0.04 1.59 5.95 30.59 0.18 1.78 16 5 H 0.10 4.12 7.45 -2.39 -0.02 4.10 16 6 C -0.13 -4.29 10.19 30.62 0.31 -3.98 16 7 C -0.18 -7.60 5.26 -11.52 -0.06 -7.66 16 8 H 0.12 4.70 6.60 -2.38 -0.02 4.68 16 9 C 0.49 26.41 6.76 87.66 0.59 27.00 16 10 O -0.59 -36.67 13.90 -3.07 -0.04 -36.71 16 11 N -0.44 -22.69 2.85 -613.15 -1.75 -24.43 16 12 C -0.36 -20.28 7.99 84.04 0.67 -19.61 16 13 H 0.08 4.35 7.19 -2.91 -0.02 4.33 16 14 C 0.02 1.14 4.35 84.93 0.37 1.51 16 15 N -0.87 -54.42 11.67 21.66 0.25 -54.17 16 16 Si 0.97 46.45 29.60 68.60 2.03 48.48 16 17 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 18 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 19 H -0.25 -11.05 7.11 99.48 0.71 -10.34 16 20 C 0.04 1.69 5.90 44.99 0.27 1.96 16 21 C -0.17 -5.98 9.80 30.62 0.30 -5.68 16 22 C -0.18 -5.65 10.36 30.62 0.32 -5.33 16 23 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.13 3.47 8.14 -2.38 -0.02 3.45 16 29 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.26 15.60 8.32 -92.71 -0.77 14.83 16 31 H 0.12 4.33 6.47 -2.39 -0.02 4.31 16 32 H 0.08 3.28 6.69 -2.39 -0.02 3.27 16 33 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 34 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 Total: -1.00 -73.82 297.42 4.15 -69.68 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 1.07 Total: 21.62 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 4.16 Total: -10.42 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -1.49 Total: -78.60 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -1.62 Total: -50.76 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -73.82 4.15 -69.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230688.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.683 kcal (2) G-P(sol) polarization free energy of solvation -73.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds