Wall clock time and date at job start Sun Mar 29 2020 22:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46908 * 2 1 4 4 C 1.42901 * 113.99641 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.56517 * 355.68291 * 4 3 2 6 6 C 1.52997 * 117.49810 * 141.37879 * 4 3 2 7 7 C 1.53001 * 117.49268 * 209.99937 * 4 3 2 8 8 H 1.09007 * 117.49691 * 144.99583 * 7 4 3 9 9 C 1.50694 * 117.50332 * 0.02562 * 7 4 3 10 10 O 1.21295 * 120.00008 * 359.97438 * 9 7 4 11 11 N 1.34775 * 120.00159 * 180.02562 * 9 7 4 12 12 C 1.37096 * 119.99944 * 179.97438 * 11 9 7 13 13 H 1.08005 * 120.00062 * 137.41118 * 12 11 9 14 14 C 1.38956 * 120.00232 * 317.41262 * 12 11 9 15 15 N 1.31405 * 119.99670 * 340.63995 * 14 12 11 16 16 Si 1.86803 * 120.00124 * 160.64425 * 14 12 11 17 17 H 1.48502 * 109.46858 * 59.99866 * 16 14 12 18 18 H 1.48495 * 109.46811 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46941 * 300.00182 * 16 14 12 20 20 C 1.46498 * 120.00271 * 359.97438 * 11 9 7 21 21 C 1.53002 * 117.50013 * 176.66318 * 20 11 9 22 22 C 1.52996 * 117.50182 * 245.28693 * 20 11 9 23 23 H 1.08992 * 109.47780 * 59.99821 * 1 2 3 24 24 H 1.09008 * 109.47064 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46658 * 299.99561 * 1 2 3 26 26 H 1.09004 * 109.46658 * 240.00439 * 2 1 3 27 27 H 1.08998 * 109.47258 * 120.00630 * 2 1 3 28 28 H 1.09002 * 117.50209 * 359.97438 * 6 4 3 29 29 H 1.09002 * 117.49718 * 214.97094 * 6 4 3 30 30 H 0.97003 * 119.99804 * 175.22256 * 15 14 12 31 31 H 1.09005 * 115.55992 * 30.97626 * 20 11 9 32 32 H 1.09003 * 117.49593 * 214.98273 * 21 20 11 33 33 H 1.08993 * 117.49660 * 0.02562 * 21 20 11 34 34 H 1.09000 * 117.49627 * 359.97438 * 22 20 11 35 35 H 1.09001 * 117.49772 * 145.01649 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9772 0.5198 0.0731 6 6 4.0510 2.5730 -0.8478 7 6 4.0425 2.6875 0.6779 8 1 4.9910 2.5545 1.1983 9 6 3.0966 3.6845 1.2962 10 8 1.8993 3.4978 1.2437 11 7 3.5811 4.7842 1.9065 12 6 2.7205 5.6915 2.4684 13 1 2.9423 6.1192 3.4351 14 6 1.5629 6.0609 1.7944 15 7 1.4646 5.8613 0.4993 16 14 0.1464 6.8414 2.7293 17 1 0.6081 8.1009 3.3663 18 1 -0.9625 7.1408 1.7881 19 1 -0.3319 5.9035 3.7765 20 6 5.0272 5.0101 1.9693 21 6 5.5115 6.3143 2.6061 22 6 5.6862 4.9887 3.3499 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.3725 3.2189 -1.4050 29 1 5.0054 2.3648 -1.3315 30 1 0.6321 6.0546 0.0406 31 1 5.6017 4.6155 1.1312 32 1 6.4046 6.7777 2.1869 33 1 4.7542 7.0040 2.9786 34 1 5.0437 4.8071 4.2115 35 1 6.6942 4.5800 3.4201 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230691.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:42 Heat of formation + Delta-G solvation = -5.621488 kcal Electronic energy + Delta-G solvation = -17789.885173 eV Core-core repulsion = 14984.012965 eV Total energy + Delta-G solvation = -2805.872208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.89697 -37.49141 -35.86573 -34.35442 -32.51083 -30.73477 -30.26862 -25.54633 -22.73150 -22.46938 -21.59226 -21.54873 -20.88696 -18.80470 -17.14062 -15.92545 -15.39960 -15.07485 -14.94884 -14.36163 -14.07025 -13.54849 -13.10269 -12.86541 -12.24041 -12.15591 -12.14123 -11.74606 -11.34295 -10.95577 -10.85785 -10.72969 -10.71532 -10.62011 -10.49684 -10.14234 -9.87624 -9.64754 -9.60297 -8.62624 -8.46067 -7.73368 -6.88663 -5.95476 -3.73090 3.38834 3.45919 3.49548 3.91398 4.08591 4.37593 4.60087 4.88327 4.97263 5.25495 5.36732 5.40818 5.49594 5.60432 5.64243 5.67659 5.73034 5.82605 5.88248 5.94838 6.09750 6.18502 6.23954 6.27967 6.33015 6.47844 6.54969 6.70722 6.84910 7.00382 7.72807 7.86660 8.40754 9.21475 9.35931 9.82412 10.51465 11.10801 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.018755 B = 0.010327 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.586099 B = 2710.587828 C = 3815.891745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.312 6.312 4 C 0.039 3.961 5 H 0.103 0.897 6 C -0.168 4.168 7 C -0.177 4.177 8 H 0.109 0.891 9 C 0.510 3.490 10 O -0.503 6.503 11 N -0.432 5.432 12 C -0.345 4.345 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.828 5.828 16 Si 0.905 3.095 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.081 3.919 21 C -0.176 4.176 22 C -0.211 4.211 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.263 0.737 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -8.002 -1.021 10.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.229 6.229 4 C -0.021 4.021 5 H 0.121 0.879 6 C -0.206 4.206 7 C -0.199 4.199 8 H 0.127 0.873 9 C 0.297 3.703 10 O -0.377 6.377 11 N -0.154 5.154 12 C -0.472 4.472 13 H 0.092 0.908 14 C -0.137 4.137 15 N -0.462 5.462 16 Si 0.732 3.268 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.026 4.026 21 C -0.214 4.214 22 C -0.250 4.250 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.244 -7.865 -1.248 9.535 hybrid contribution -0.292 0.237 0.388 0.540 sum 4.952 -7.628 -0.860 9.135 Atomic orbital electron populations 1.21673 0.94058 1.01141 1.03614 1.22444 0.95688 0.85138 0.98872 1.88311 1.17267 1.23742 1.93600 1.22449 0.83242 0.92563 1.03797 0.87917 1.23319 1.01877 1.02490 0.92894 1.22914 1.00988 1.00084 0.95911 0.87305 1.18775 0.87864 0.81084 0.82599 1.90577 1.15154 1.74648 1.57336 1.42728 1.01134 1.18538 1.53012 1.18770 1.03945 1.23185 1.01292 0.90789 1.25124 0.99285 0.95111 0.94167 1.69880 1.25630 1.43279 1.07383 0.86404 0.81894 0.78805 0.79686 1.20527 1.21319 1.20160 1.21624 0.86263 1.00792 0.93889 1.23054 1.02210 0.91634 1.04472 1.23320 1.00905 1.02550 0.98248 0.92032 0.91887 0.91515 0.94306 0.94034 0.87655 0.88693 0.92718 0.88087 0.89947 0.87600 0.89211 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.28 37.16 0.38 -1.81 16 2 C 0.06 0.88 6.53 37.16 0.24 1.13 16 3 O -0.31 -6.61 8.48 -57.36 -0.49 -7.10 16 4 C 0.04 0.71 6.40 -26.73 -0.17 0.54 16 5 H 0.10 1.46 7.93 -51.93 -0.41 1.05 16 6 C -0.17 -3.05 10.18 -26.73 -0.27 -3.32 16 7 C -0.18 -3.60 4.95 -91.77 -0.45 -4.06 16 8 H 0.11 1.90 7.31 -51.92 -0.38 1.52 16 9 C 0.51 13.52 6.76 -10.99 -0.07 13.45 16 10 O -0.50 -15.34 12.56 -16.59 -0.21 -15.55 16 11 N -0.43 -11.26 2.85 -107.73 -0.31 -11.56 16 12 C -0.35 -9.77 8.00 -14.93 -0.12 -9.89 16 13 H 0.07 2.03 7.18 -52.48 -0.38 1.65 16 14 C 0.07 2.14 4.35 -17.47 -0.08 2.07 16 15 N -0.83 -25.40 11.66 55.50 0.65 -24.76 16 16 Si 0.90 22.70 29.60 -169.99 -5.03 17.67 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 C 0.08 1.68 5.62 -67.93 -0.38 1.30 16 21 C -0.18 -3.30 9.79 -26.73 -0.26 -3.56 16 22 C -0.21 -3.74 10.36 -26.73 -0.28 -4.02 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.11 2.25 8.14 -51.93 -0.42 1.83 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.26 7.82 8.32 -40.82 -0.34 7.48 16 31 H 0.10 1.90 7.12 -51.93 -0.37 1.53 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.11 2.20 6.68 -51.93 -0.35 1.86 16 34 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 295.63 15.07 4.46 4.46 Total: -1.00 -34.49 295.63 -7.64 -42.13 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.25 Total: 2.90 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.46 Total: -8.18 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.34 Total: -36.32 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.69 Total: -22.65 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.67 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.49 -7.64 -42.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230691.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.507 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds