Wall clock time and date at job start Sun Mar 29 2020 22:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46908 * 2 1 4 4 C 1.42901 * 113.99641 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.56517 * 355.68291 * 4 3 2 6 6 C 1.52997 * 117.49810 * 141.37879 * 4 3 2 7 7 C 1.53001 * 117.49268 * 209.99937 * 4 3 2 8 8 H 1.09007 * 117.49691 * 144.99583 * 7 4 3 9 9 C 1.50694 * 117.50332 * 0.02562 * 7 4 3 10 10 O 1.21295 * 120.00008 * 359.97438 * 9 7 4 11 11 N 1.34775 * 120.00159 * 180.02562 * 9 7 4 12 12 C 1.37096 * 119.99944 * 179.97438 * 11 9 7 13 13 H 1.08005 * 120.00062 * 137.41118 * 12 11 9 14 14 C 1.38956 * 120.00232 * 317.41262 * 12 11 9 15 15 N 1.31405 * 119.99670 * 340.63995 * 14 12 11 16 16 Si 1.86803 * 120.00124 * 160.64425 * 14 12 11 17 17 H 1.48502 * 109.46858 * 59.99866 * 16 14 12 18 18 H 1.48495 * 109.46811 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46941 * 300.00182 * 16 14 12 20 20 C 1.46498 * 120.00271 * 359.97438 * 11 9 7 21 21 C 1.53002 * 117.50013 * 176.66318 * 20 11 9 22 22 C 1.52996 * 117.50182 * 245.28693 * 20 11 9 23 23 H 1.08992 * 109.47780 * 59.99821 * 1 2 3 24 24 H 1.09008 * 109.47064 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46658 * 299.99561 * 1 2 3 26 26 H 1.09004 * 109.46658 * 240.00439 * 2 1 3 27 27 H 1.08998 * 109.47258 * 120.00630 * 2 1 3 28 28 H 1.09002 * 117.50209 * 359.97438 * 6 4 3 29 29 H 1.09002 * 117.49718 * 214.97094 * 6 4 3 30 30 H 0.97003 * 119.99804 * 175.22256 * 15 14 12 31 31 H 1.09005 * 115.55992 * 30.97626 * 20 11 9 32 32 H 1.09003 * 117.49593 * 214.98273 * 21 20 11 33 33 H 1.08993 * 117.49660 * 0.02562 * 21 20 11 34 34 H 1.09000 * 117.49627 * 359.97438 * 22 20 11 35 35 H 1.09001 * 117.49772 * 145.01649 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9772 0.5198 0.0731 6 6 4.0510 2.5730 -0.8478 7 6 4.0425 2.6875 0.6779 8 1 4.9910 2.5545 1.1983 9 6 3.0966 3.6845 1.2962 10 8 1.8993 3.4978 1.2437 11 7 3.5811 4.7842 1.9065 12 6 2.7205 5.6915 2.4684 13 1 2.9423 6.1192 3.4351 14 6 1.5629 6.0609 1.7944 15 7 1.4646 5.8613 0.4993 16 14 0.1464 6.8414 2.7293 17 1 0.6081 8.1009 3.3663 18 1 -0.9625 7.1408 1.7881 19 1 -0.3319 5.9035 3.7765 20 6 5.0272 5.0101 1.9693 21 6 5.5115 6.3143 2.6061 22 6 5.6862 4.9887 3.3499 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.3725 3.2189 -1.4050 29 1 5.0054 2.3648 -1.3315 30 1 0.6321 6.0546 0.0406 31 1 5.6017 4.6155 1.1312 32 1 6.4046 6.7777 2.1869 33 1 4.7542 7.0040 2.9786 34 1 5.0437 4.8071 4.2115 35 1 6.6942 4.5800 3.4201 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068230691.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:41 Heat of formation + Delta-G solvation = -27.861594 kcal Electronic energy + Delta-G solvation = -17790.849576 eV Core-core repulsion = 14984.012965 eV Total energy + Delta-G solvation = -2806.836611 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.61275 -39.03462 -37.55445 -35.90654 -34.54805 -32.69869 -31.58362 -27.57452 -24.51146 -23.69604 -23.04332 -22.93834 -22.58142 -20.65807 -18.75255 -17.79775 -17.13130 -16.63406 -16.33457 -16.19735 -15.63268 -15.36858 -14.72806 -14.62931 -13.81890 -13.73611 -13.49150 -13.20585 -13.02411 -12.82115 -12.78197 -12.62685 -12.21874 -12.11872 -11.99169 -11.78383 -11.62257 -11.17901 -11.11517 -10.66882 -9.92978 -9.69855 -8.92146 -8.12338 -5.93198 1.34046 1.42392 1.46305 2.23662 2.37982 2.76422 3.03536 3.13090 3.24032 3.50061 3.92725 4.03846 4.14335 4.20098 4.22673 4.30016 4.35609 4.48579 4.51324 4.58410 4.63988 4.86292 4.90769 4.91088 5.03266 5.06619 5.20414 5.27460 5.33302 5.47438 5.51838 6.23163 6.58978 7.10063 7.34241 7.80429 8.52759 8.91819 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.018755 B = 0.010327 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.586099 B = 2710.587828 C = 3815.891745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.365 6.365 4 C 0.045 3.955 5 H 0.154 0.846 6 C -0.156 4.156 7 C -0.195 4.195 8 H 0.144 0.856 9 C 0.491 3.509 10 O -0.560 6.560 11 N -0.451 5.451 12 C -0.353 4.353 13 H 0.074 0.926 14 C 0.021 3.979 15 N -0.866 5.866 16 Si 0.961 3.039 17 H -0.256 1.256 18 H -0.289 1.289 19 H -0.284 1.284 20 C 0.049 3.951 21 C -0.175 4.175 22 C -0.180 4.180 23 H 0.048 0.952 24 H 0.102 0.898 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.146 0.854 30 H 0.254 0.746 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.705 -9.409 -0.746 12.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 O -0.283 6.283 4 C -0.014 4.014 5 H 0.171 0.829 6 C -0.194 4.194 7 C -0.216 4.216 8 H 0.162 0.838 9 C 0.280 3.720 10 O -0.439 6.439 11 N -0.172 5.172 12 C -0.481 4.481 13 H 0.092 0.908 14 C -0.185 4.185 15 N -0.502 5.502 16 Si 0.786 3.214 17 H -0.180 1.180 18 H -0.215 1.215 19 H -0.210 1.210 20 C -0.056 4.056 21 C -0.212 4.212 22 C -0.219 4.219 23 H 0.067 0.933 24 H 0.121 0.879 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.164 0.836 30 H 0.063 0.937 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.835 -9.250 -0.946 12.159 hybrid contribution -1.026 0.644 0.353 1.262 sum 6.809 -8.606 -0.593 10.990 Atomic orbital electron populations 1.21718 0.94168 1.03009 1.01468 1.22726 0.95788 0.83405 1.00918 1.88271 1.19232 1.27043 1.93740 1.22891 0.82634 0.93858 1.01972 0.82854 1.23333 1.03237 1.01688 0.91097 1.22830 1.01405 1.00154 0.97216 0.83822 1.19842 0.88373 0.81827 0.81946 1.90529 1.17870 1.76157 1.59344 1.42997 1.03329 1.18182 1.52741 1.19030 1.04849 1.22862 1.01311 0.90805 1.25945 1.01741 0.95977 0.94845 1.70003 1.25504 1.45833 1.08837 0.85519 0.79000 0.78650 0.78192 1.18046 1.21530 1.20970 1.21951 0.83632 1.03314 0.96721 1.23105 1.02601 0.91213 1.04300 1.23324 1.02156 1.01054 0.95380 0.93285 0.87938 0.94524 0.91246 0.92614 0.92110 0.83582 0.93681 0.85690 0.86460 0.90471 0.91072 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 10.28 71.98 0.74 -3.59 16 2 C 0.05 1.44 6.53 71.98 0.47 1.91 16 3 O -0.36 -15.46 8.48 -127.82 -1.08 -16.54 16 4 C 0.05 1.55 6.40 30.59 0.20 1.74 16 5 H 0.15 3.61 7.93 -2.39 -0.02 3.59 16 6 C -0.16 -5.38 10.18 30.59 0.31 -5.07 16 7 C -0.19 -7.61 4.95 -11.54 -0.06 -7.67 16 8 H 0.14 4.48 7.31 -2.38 -0.02 4.46 16 9 C 0.49 26.53 6.76 87.66 0.59 27.12 16 10 O -0.56 -35.76 12.56 18.08 0.23 -35.54 16 11 N -0.45 -23.76 2.85 -613.13 -1.75 -25.51 16 12 C -0.35 -20.52 8.00 84.04 0.67 -19.85 16 13 H 0.07 4.15 7.18 -2.91 -0.02 4.13 16 14 C 0.02 1.25 4.35 84.93 0.37 1.62 16 15 N -0.87 -55.67 11.66 21.66 0.25 -55.42 16 16 Si 0.96 48.24 29.60 68.60 2.03 50.27 16 17 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 18 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 19 H -0.28 -14.41 7.11 99.48 0.71 -13.71 16 20 C 0.05 1.95 5.62 44.99 0.25 2.21 16 21 C -0.17 -6.20 9.79 30.59 0.30 -5.90 16 22 C -0.18 -5.85 10.36 30.59 0.32 -5.54 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 25 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.15 3.47 8.14 -2.39 -0.02 3.45 16 30 H 0.25 16.00 8.32 -92.71 -0.77 15.23 16 31 H 0.13 4.33 7.12 -2.38 -0.02 4.31 16 32 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 33 H 0.08 3.19 6.68 -2.39 -0.02 3.18 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -81.27 295.63 4.91 -76.36 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 1.07 Total: 19.36 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 4.16 Total: -12.99 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -1.49 Total: -80.93 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -0.86 Total: -52.07 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -81.27 4.91 -76.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230691.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.503 kcal (2) G-P(sol) polarization free energy of solvation -81.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds