Wall clock time and date at job start Sun Mar 29 2020 22:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 120.00217 * 2 1 4 4 H 1.08002 * 119.99797 * 162.19799 * 3 2 1 5 5 C 1.38813 * 119.99888 * 342.47525 * 3 2 1 6 6 N 1.31619 * 120.00089 * 344.95419 * 5 3 2 7 7 Si 1.86803 * 119.99898 * 164.95477 * 5 3 2 8 8 H 1.48493 * 109.47118 * 89.99858 * 7 5 3 9 9 H 1.48495 * 109.46804 * 210.00058 * 7 5 3 10 10 H 1.48500 * 109.46948 * 329.99868 * 7 5 3 11 11 C 1.46500 * 119.99937 * 180.02562 * 2 1 3 12 12 C 1.50699 * 109.46953 * 269.99769 * 11 2 1 13 13 N 1.30277 * 126.28515 * 90.02539 * 12 11 2 14 14 N 1.28665 * 109.38429 * 179.97438 * 13 12 11 15 15 C 1.30275 * 109.37967 * 359.97438 * 14 13 12 16 16 C 1.50701 * 126.28038 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47666 * 60.02016 * 16 15 14 18 18 C 1.53001 * 109.46960 * 180.02562 * 16 15 14 19 19 C 1.53007 * 109.46941 * 300.01721 * 16 15 14 20 20 O 1.34360 * 126.28218 * 269.70907 * 12 11 2 21 21 H 1.09002 * 109.47459 * 84.95889 * 1 2 3 22 22 H 1.09001 * 109.47016 * 204.96097 * 1 2 3 23 23 H 1.08999 * 109.46725 * 324.95511 * 1 2 3 24 24 H 0.96997 * 119.99900 * 180.02562 * 6 5 3 25 25 H 1.09008 * 109.47096 * 29.99451 * 11 2 1 26 26 H 1.08997 * 109.47664 * 149.99841 * 11 2 1 27 27 H 1.08997 * 109.46861 * 59.99619 * 17 16 15 28 28 H 1.08993 * 109.47147 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.46760 * 300.00556 * 17 16 15 30 30 H 1.09001 * 109.47469 * 59.99378 * 18 16 15 31 31 H 1.08999 * 109.47079 * 179.97438 * 18 16 15 32 32 H 1.09001 * 109.46800 * 299.99377 * 18 16 15 33 33 H 1.09000 * 109.46699 * 59.99926 * 19 16 15 34 34 H 1.08999 * 109.47008 * 180.02562 * 19 16 15 35 35 H 1.08996 * 109.46894 * 300.00816 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1909 1.2082 0.2860 5 6 1.5040 2.3601 -0.3620 6 7 0.3438 2.3091 -0.9815 7 14 2.2816 4.0127 0.0301 8 1 3.1477 4.4329 -1.1005 9 1 1.2150 5.0244 0.2393 10 1 3.1003 3.8943 1.2634 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 7 1.6680 -2.4526 2.1465 14 7 2.1973 -2.6218 3.3070 15 6 3.3340 -1.9876 3.3602 16 6 4.2693 -1.9312 4.5405 17 6 4.7226 -3.3475 4.9002 18 6 5.4897 -1.0801 4.1840 19 6 3.5450 -1.3085 5.7359 20 8 3.5218 -1.3971 2.1679 21 1 -0.3634 0.0903 -1.0237 22 1 -0.3633 -0.9317 0.4337 23 1 -0.3633 0.8414 0.5901 24 1 -0.1072 3.1297 -1.2348 25 1 1.6083 -2.0282 -0.5147 26 1 3.1499 -1.1383 -0.5143 27 1 5.2386 -3.7911 4.0487 28 1 5.3987 -3.3067 5.7542 29 1 3.8531 -3.9538 5.1542 30 1 5.1667 -0.0711 3.9277 31 1 6.1659 -1.0390 5.0378 32 1 6.0057 -1.5237 3.3324 33 1 2.6755 -1.9148 5.9898 34 1 4.2216 -1.2674 6.5894 35 1 3.2220 -0.2996 5.4795 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068554955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:28 Heat of formation + Delta-G solvation = 47.982817 kcal Electronic energy + Delta-G solvation = -17508.436737 eV Core-core repulsion = 14737.181737 eV Total energy + Delta-G solvation = -2771.254999 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.50674 -37.10633 -35.80183 -35.43763 -31.95462 -29.94202 -27.50570 -27.40402 -26.70323 -25.91570 -23.41330 -22.43447 -20.82425 -19.81869 -16.97302 -16.63347 -16.46896 -15.23275 -14.99967 -14.50578 -14.11012 -13.82476 -13.58269 -13.31440 -12.44930 -12.37842 -11.98189 -11.90109 -11.77604 -11.69118 -11.44668 -11.27765 -11.17100 -11.02497 -10.96255 -10.88444 -10.52752 -10.27565 -10.12305 -10.04296 -8.89973 -8.68807 -7.12472 -5.91124 -3.36195 1.83986 2.87744 3.03815 3.30140 3.36573 3.39281 4.22201 4.37804 4.66215 4.77502 4.93217 5.16317 5.32390 5.42825 5.45589 5.50007 5.64730 5.68640 5.74699 5.75186 5.87541 5.95575 6.13211 6.17407 6.22515 6.23334 6.29214 6.45136 6.72480 7.31788 7.57920 7.69407 8.15489 8.98438 9.02856 9.62333 10.06862 11.13552 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.027523 B = 0.007143 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.087919 B = 3918.947802 C = 4537.825834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.155 3.845 2 N -0.577 5.577 3 C -0.275 4.275 4 H 0.074 0.926 5 C 0.011 3.989 6 N -0.899 5.899 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.287 1.287 10 H -0.279 1.279 11 C 0.229 3.771 12 C 0.173 3.827 13 N -0.313 5.313 14 N -0.292 5.292 15 C 0.140 3.860 16 C 0.036 3.964 17 C -0.137 4.137 18 C -0.147 4.147 19 C -0.140 4.140 20 O -0.220 6.220 21 H 0.038 0.962 22 H 0.009 0.991 23 H 0.049 0.951 24 H 0.256 0.744 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.664 -7.436 9.042 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.296 5.296 3 C -0.403 4.403 4 H 0.092 0.908 5 C -0.189 4.189 6 N -0.542 5.542 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.213 1.213 10 H -0.204 1.204 11 C 0.095 3.905 12 C -0.042 4.042 13 N -0.159 5.159 14 N -0.139 5.139 15 C -0.073 4.073 16 C 0.034 3.966 17 C -0.195 4.195 18 C -0.204 4.204 19 C -0.197 4.197 20 O -0.098 6.098 21 H 0.057 0.943 22 H 0.028 0.972 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.475 -7.961 9.277 14.329 hybrid contribution 1.186 1.756 -0.079 2.121 sum 8.661 -6.205 9.198 14.075 Atomic orbital electron populations 1.20997 0.81149 0.96677 1.00046 1.44097 1.02686 0.99942 1.82893 1.19261 0.95701 0.84373 1.40991 0.90795 1.24956 0.97217 0.98476 0.98229 1.70122 1.16655 1.26988 1.40424 0.86209 0.78334 0.83322 0.78403 1.21019 1.21290 1.20438 1.19508 0.98709 0.90273 0.81983 1.31327 0.80538 0.92316 1.00025 1.74304 1.25529 1.17812 0.98280 1.74153 1.06055 1.19971 1.13690 1.27685 0.96824 0.95065 0.87685 1.19039 0.91861 0.98116 0.87570 1.21885 1.02005 0.93804 1.01808 1.21914 0.96131 1.00246 1.02127 1.21904 1.00814 1.01357 0.95671 1.84863 1.43113 1.59284 1.22535 0.94335 0.97218 0.93217 0.93328 0.88945 0.89945 0.92279 0.91074 0.91245 0.91554 0.91205 0.91838 0.91242 0.91070 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.88 8.97 59.85 0.54 4.42 16 2 N -0.58 -14.50 2.91 -182.50 -0.53 -15.03 16 3 C -0.27 -7.46 9.70 -15.06 -0.15 -7.60 16 4 H 0.07 1.97 7.87 -52.49 -0.41 1.56 16 5 C 0.01 0.29 5.08 -17.43 -0.09 0.20 16 6 N -0.90 -25.61 10.51 55.49 0.58 -25.03 16 7 Si 0.91 21.53 29.58 -169.99 -5.03 16.50 16 8 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 C 0.23 4.73 6.27 -5.19 -0.03 4.70 16 12 C 0.17 3.67 8.06 -12.94 -0.10 3.56 16 13 N -0.31 -6.85 12.22 32.55 0.40 -6.45 16 14 N -0.29 -5.92 12.22 32.55 0.40 -5.52 16 15 C 0.14 2.52 6.57 -12.94 -0.09 2.44 16 16 C 0.04 0.47 0.99 -155.66 -0.15 0.31 16 17 C -0.14 -1.45 8.46 37.16 0.31 -1.14 16 18 C -0.15 -1.69 8.06 37.16 0.30 -1.39 16 19 C -0.14 -1.65 8.46 37.16 0.31 -1.33 16 20 O -0.22 -4.45 10.32 5.38 0.06 -4.40 16 21 H 0.04 1.00 7.48 -51.93 -0.39 0.61 16 22 H 0.01 0.21 8.03 -51.93 -0.42 -0.20 16 23 H 0.05 1.35 7.01 -51.93 -0.36 0.99 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.09 1.71 8.07 -51.92 -0.42 1.29 16 26 H 0.08 1.57 8.04 -51.93 -0.42 1.16 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 297.80 15.07 4.49 4.49 Total: -1.00 -31.16 297.80 -4.14 -35.31 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -5.36 Total: -4.04 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 0.85 Total: 4.17 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.85 Total: -52.03 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: 0.06 Total: -4.40 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.16 -4.14 -35.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068554955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.289 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds