Wall clock time and date at job start Sun Mar 29 2020 22:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 120.00217 * 2 1 4 4 H 1.08002 * 119.99797 * 162.19799 * 3 2 1 5 5 C 1.38813 * 119.99888 * 342.47525 * 3 2 1 6 6 N 1.31619 * 120.00089 * 344.95419 * 5 3 2 7 7 Si 1.86803 * 119.99898 * 164.95477 * 5 3 2 8 8 H 1.48493 * 109.47118 * 89.99858 * 7 5 3 9 9 H 1.48495 * 109.46804 * 210.00058 * 7 5 3 10 10 H 1.48500 * 109.46948 * 329.99868 * 7 5 3 11 11 C 1.46500 * 119.99937 * 180.02562 * 2 1 3 12 12 C 1.50699 * 109.46953 * 269.99769 * 11 2 1 13 13 N 1.30277 * 126.28515 * 90.02539 * 12 11 2 14 14 N 1.28665 * 109.38429 * 179.97438 * 13 12 11 15 15 C 1.30275 * 109.37967 * 359.97438 * 14 13 12 16 16 C 1.50701 * 126.28038 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47666 * 60.02016 * 16 15 14 18 18 C 1.53001 * 109.46960 * 180.02562 * 16 15 14 19 19 C 1.53007 * 109.46941 * 300.01721 * 16 15 14 20 20 O 1.34360 * 126.28218 * 269.70907 * 12 11 2 21 21 H 1.09002 * 109.47459 * 84.95889 * 1 2 3 22 22 H 1.09001 * 109.47016 * 204.96097 * 1 2 3 23 23 H 1.08999 * 109.46725 * 324.95511 * 1 2 3 24 24 H 0.96997 * 119.99900 * 180.02562 * 6 5 3 25 25 H 1.09008 * 109.47096 * 29.99451 * 11 2 1 26 26 H 1.08997 * 109.47664 * 149.99841 * 11 2 1 27 27 H 1.08997 * 109.46861 * 59.99619 * 17 16 15 28 28 H 1.08993 * 109.47147 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.46760 * 300.00556 * 17 16 15 30 30 H 1.09001 * 109.47469 * 59.99378 * 18 16 15 31 31 H 1.08999 * 109.47079 * 179.97438 * 18 16 15 32 32 H 1.09001 * 109.46800 * 299.99377 * 18 16 15 33 33 H 1.09000 * 109.46699 * 59.99926 * 19 16 15 34 34 H 1.08999 * 109.47008 * 180.02562 * 19 16 15 35 35 H 1.08996 * 109.46894 * 300.00816 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1909 1.2082 0.2860 5 6 1.5040 2.3601 -0.3620 6 7 0.3438 2.3091 -0.9815 7 14 2.2816 4.0127 0.0301 8 1 3.1477 4.4329 -1.1005 9 1 1.2150 5.0244 0.2393 10 1 3.1003 3.8943 1.2634 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 7 1.6680 -2.4526 2.1465 14 7 2.1973 -2.6218 3.3070 15 6 3.3340 -1.9876 3.3602 16 6 4.2693 -1.9312 4.5405 17 6 4.7226 -3.3475 4.9002 18 6 5.4897 -1.0801 4.1840 19 6 3.5450 -1.3085 5.7359 20 8 3.5218 -1.3971 2.1679 21 1 -0.3634 0.0903 -1.0237 22 1 -0.3633 -0.9317 0.4337 23 1 -0.3633 0.8414 0.5901 24 1 -0.1072 3.1297 -1.2348 25 1 1.6083 -2.0282 -0.5147 26 1 3.1499 -1.1383 -0.5143 27 1 5.2386 -3.7911 4.0487 28 1 5.3987 -3.3067 5.7542 29 1 3.8531 -3.9538 5.1542 30 1 5.1667 -0.0711 3.9277 31 1 6.1659 -1.0390 5.0378 32 1 6.0057 -1.5237 3.3324 33 1 2.6755 -1.9148 5.9898 34 1 4.2216 -1.2674 6.5894 35 1 3.2220 -0.2996 5.4795 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068554955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:27 Heat of formation + Delta-G solvation = 24.912926 kcal Electronic energy + Delta-G solvation = -17509.437122 eV Core-core repulsion = 14737.181737 eV Total energy + Delta-G solvation = -2772.255385 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.08551 -38.23597 -37.61980 -37.04179 -33.86798 -31.66301 -28.71164 -28.28612 -28.19827 -27.88714 -24.89108 -24.20782 -22.61505 -21.02345 -18.93092 -18.26193 -17.94171 -16.95665 -16.47936 -16.08158 -15.51732 -15.28708 -14.98566 -14.86328 -13.86133 -13.42748 -13.42462 -13.21358 -13.16118 -12.96049 -12.92813 -12.83796 -12.69570 -12.63204 -12.40930 -12.15058 -12.12715 -12.08952 -12.00933 -11.70864 -10.78681 -10.42094 -9.14596 -7.97390 -5.45665 0.29477 1.37183 1.43330 1.45549 1.48403 1.53779 2.42787 2.87767 3.21934 3.48210 3.56099 3.73634 3.82012 3.99135 4.26672 4.52261 4.55984 4.64005 4.67661 4.70290 4.74579 4.77033 4.81700 4.88063 4.89549 4.99605 5.17651 5.24733 5.27415 5.32857 5.49874 5.60636 6.12941 6.96660 7.40264 7.62747 8.04708 9.06600 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.027523 B = 0.007143 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.087919 B = 3918.947802 C = 4537.825834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.596 5.596 3 C -0.283 4.283 4 H 0.075 0.925 5 C -0.041 4.041 6 N -0.929 5.929 7 Si 0.971 3.029 8 H -0.275 1.275 9 H -0.290 1.290 10 H -0.275 1.275 11 C 0.232 3.768 12 C 0.162 3.838 13 N -0.329 5.329 14 N -0.319 5.319 15 C 0.156 3.844 16 C 0.029 3.971 17 C -0.132 4.132 18 C -0.143 4.143 19 C -0.137 4.137 20 O -0.230 6.230 21 H 0.023 0.977 22 H 0.026 0.974 23 H 0.019 0.981 24 H 0.254 0.746 25 H 0.113 0.887 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.109 0.891 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.741 -7.774 10.608 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.316 5.316 3 C -0.412 4.412 4 H 0.093 0.907 5 C -0.238 4.238 6 N -0.573 5.573 7 Si 0.798 3.202 8 H -0.201 1.201 9 H -0.216 1.216 10 H -0.200 1.200 11 C 0.100 3.900 12 C -0.053 4.053 13 N -0.176 5.176 14 N -0.164 5.164 15 C -0.057 4.057 16 C 0.027 3.973 17 C -0.190 4.190 18 C -0.201 4.201 19 C -0.195 4.195 20 O -0.108 6.108 21 H 0.042 0.958 22 H 0.045 0.955 23 H 0.038 0.962 24 H 0.063 0.937 25 H 0.131 0.869 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.127 0.873 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.569 -8.342 10.858 16.705 hybrid contribution 0.610 1.752 -0.469 1.914 sum 10.178 -6.590 10.389 15.967 Atomic orbital electron populations 1.20683 0.81654 0.96121 0.98591 1.44221 1.02694 1.00995 1.83725 1.19526 0.95923 0.85448 1.40332 0.90692 1.25731 0.97934 1.01624 0.98469 1.70255 1.17957 1.27431 1.41682 0.85241 0.77417 0.79239 0.78351 1.20133 1.21637 1.19994 1.19685 0.99405 0.89049 0.81848 1.30936 0.81085 0.93130 1.00193 1.74242 1.26084 1.18201 0.99044 1.74109 1.07338 1.21644 1.13309 1.28915 0.96567 0.92429 0.87776 1.19557 0.91548 1.00336 0.85812 1.21897 1.02282 0.91572 1.03200 1.21932 0.95890 0.98550 1.03712 1.21933 1.01355 0.99805 0.96381 1.84853 1.42943 1.59630 1.23411 0.95841 0.95505 0.96219 0.93708 0.86888 0.88396 0.92467 0.87287 0.92232 0.93536 0.87404 0.92108 0.92232 0.87038 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.85 8.97 127.77 1.15 10.00 16 2 N -0.60 -30.05 2.91 -731.30 -2.13 -32.18 16 3 C -0.28 -15.41 9.70 84.03 0.82 -14.59 16 4 H 0.08 3.97 7.87 -2.91 -0.02 3.95 16 5 C -0.04 -2.28 5.08 84.86 0.43 -1.85 16 6 N -0.93 -53.82 10.51 21.65 0.23 -53.59 16 7 Si 0.97 44.34 29.58 68.60 2.03 46.37 16 8 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 9 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 C 0.23 9.45 6.27 85.63 0.54 9.98 16 12 C 0.16 6.80 8.06 88.34 0.71 7.51 16 13 N -0.33 -14.36 12.22 -165.50 -2.02 -16.38 16 14 N -0.32 -12.78 12.22 -165.50 -2.02 -14.81 16 15 C 0.16 5.45 6.57 88.34 0.58 6.03 16 16 C 0.03 0.69 0.99 -52.93 -0.05 0.64 16 17 C -0.13 -2.36 8.46 71.98 0.61 -1.76 16 18 C -0.14 -2.89 8.06 71.98 0.58 -2.31 16 19 C -0.14 -2.89 8.46 71.98 0.61 -2.28 16 20 O -0.23 -9.15 10.32 -3.65 -0.04 -9.19 16 21 H 0.02 1.24 7.48 -2.39 -0.02 1.22 16 22 H 0.03 1.23 8.03 -2.39 -0.02 1.21 16 23 H 0.02 1.08 7.01 -2.39 -0.02 1.06 16 24 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.11 4.08 8.07 -2.38 -0.02 4.06 16 26 H 0.10 3.65 8.04 -2.39 -0.02 3.63 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -67.55 297.80 3.07 -64.48 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 1.06 Total: 3.92 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 5.97 Total: 11.38 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -5.95 Total: -116.96 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.04 Total: -9.19 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -67.55 3.07 -64.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068554955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.395 kcal (2) G-P(sol) polarization free energy of solvation -67.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds