Wall clock time and date at job start Sun Mar 29 2020 22:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47295 * 2 1 4 4 C 1.53004 * 109.46652 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.46680 * 180.02562 * 4 3 2 6 6 N 1.31134 * 126.55322 * 90.25146 * 5 4 3 7 7 C 1.34494 * 105.61612 * 180.12411 * 6 5 4 8 8 C 1.50700 * 126.28699 * 179.90626 * 7 6 5 9 9 N 1.46493 * 109.46999 * 269.70671 * 8 7 6 10 10 C 1.46503 * 120.00450 * 269.99930 * 9 8 7 11 11 C 1.36940 * 119.99897 * 90.00207 * 9 8 7 12 12 H 1.08002 * 119.99695 * 339.15079 * 11 9 8 13 13 C 1.38814 * 120.00203 * 159.42240 * 11 9 8 14 14 N 1.31622 * 119.99766 * 347.70754 * 13 11 9 15 15 Si 1.86799 * 120.00051 * 167.70590 * 13 11 9 16 16 H 1.48494 * 109.47085 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.46948 * 120.00006 * 15 13 11 18 18 H 1.48498 * 109.46943 * 240.00000 * 15 13 11 19 19 N 1.29950 * 107.42181 * 359.63681 * 7 6 5 20 20 O 1.21293 * 110.25413 * 0.23409 * 19 7 6 21 21 H 1.09001 * 109.47033 * 300.00466 * 1 2 3 22 22 H 1.09004 * 109.46819 * 59.99416 * 1 2 3 23 23 H 1.08995 * 109.47691 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47033 * 239.99534 * 2 1 3 25 25 H 1.09004 * 109.46819 * 120.00584 * 2 1 3 26 26 H 1.08995 * 109.47481 * 60.00260 * 3 2 1 27 27 H 1.08995 * 109.46966 * 299.99690 * 3 2 1 28 28 H 1.08992 * 109.47394 * 60.00562 * 4 3 2 29 29 H 1.08995 * 109.47183 * 299.99559 * 4 3 2 30 30 H 1.09006 * 109.46721 * 149.71173 * 8 7 6 31 31 H 1.08990 * 109.47243 * 29.71136 * 8 7 6 32 32 H 1.09000 * 109.47250 * 264.89870 * 10 9 8 33 33 H 1.09001 * 109.46544 * 24.90170 * 10 9 8 34 34 H 1.09002 * 109.47318 * 144.89472 * 10 9 8 35 35 H 0.96997 * 120.00108 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0725 2.8631 0.0013 6 7 4.3367 3.5976 1.0550 7 6 4.7511 4.7836 0.5749 8 6 5.1735 5.9778 1.3913 9 7 4.0085 6.8258 1.6552 10 6 3.6557 7.8975 0.7208 11 6 3.2491 6.6167 2.7754 12 1 3.2800 5.6612 3.2781 13 6 2.4354 7.6308 3.2617 14 7 2.5684 8.8577 2.8040 15 14 1.1518 7.2542 4.5655 16 1 1.2034 5.8103 4.9084 17 1 1.4284 8.0622 5.7802 18 1 -0.1972 7.5906 4.0437 19 7 4.7257 4.7087 -0.7221 20 8 4.3387 3.6137 -1.0720 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5140 0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6768 1.9562 -0.8900 28 1 3.9338 0.9284 -0.8891 29 1 3.9330 0.9286 0.8909 30 1 5.9210 6.5486 0.8402 31 1 5.5986 5.6399 2.3363 32 1 4.0891 8.8367 1.0646 33 1 4.0443 7.6588 -0.2692 34 1 2.5711 7.9944 0.6716 35 1 2.0001 9.5664 3.1439 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068971690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:15 Heat of formation + Delta-G solvation = 72.705615 kcal Electronic energy + Delta-G solvation = -17009.468204 eV Core-core repulsion = 14239.285266 eV Total energy + Delta-G solvation = -2770.182939 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.95006 -36.33717 -36.14144 -34.62958 -32.70237 -31.12789 -29.59672 -27.10570 -25.83104 -24.85978 -23.10277 -21.71846 -21.26879 -20.24895 -17.52969 -16.89236 -16.65951 -15.69694 -14.93332 -14.81180 -14.08239 -13.88298 -13.55015 -13.34030 -13.22317 -12.57814 -12.06368 -11.69310 -11.64215 -11.43797 -11.25951 -11.14889 -11.06642 -10.81219 -10.73156 -10.67799 -10.47739 -10.29379 -9.98580 -9.92628 -9.29133 -8.59904 -6.92848 -5.76114 -3.23162 1.69789 2.91011 3.26281 3.37262 3.44375 3.48233 4.20564 4.49661 4.73145 4.74660 4.83294 4.91010 5.20290 5.31027 5.42614 5.43689 5.59469 5.61323 5.67352 5.76521 5.80217 5.99936 6.08612 6.19909 6.24053 6.41311 6.50979 6.67594 6.77408 7.37613 7.69620 7.83486 8.32340 8.82784 9.18683 9.78621 10.25413 11.29303 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.019462 B = 0.006955 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.392639 B = 4025.015433 C = 5097.595821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.121 4.121 4 C -0.019 4.019 5 C 0.153 3.847 6 N -0.467 5.467 7 C 0.174 3.826 8 C 0.228 3.772 9 N -0.585 5.585 10 C 0.161 3.839 11 C -0.257 4.257 12 H 0.075 0.925 13 C 0.003 3.997 14 N -0.908 5.908 15 Si 0.907 3.093 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.289 1.289 19 N -0.395 5.395 20 O 0.060 5.940 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.000 1.000 34 H 0.045 0.955 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -15.760 -6.448 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.159 4.159 4 C -0.058 4.058 5 C -0.069 4.069 6 N -0.201 5.201 7 C -0.102 4.102 8 C 0.097 3.903 9 N -0.307 5.307 10 C 0.016 3.984 11 C -0.386 4.386 12 H 0.093 0.907 13 C -0.195 4.195 14 N -0.552 5.552 15 Si 0.737 3.263 16 H -0.201 1.201 17 H -0.215 1.215 18 H -0.216 1.216 19 N -0.106 5.106 20 O 0.005 5.995 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.064 0.936 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.547 -14.798 -6.480 16.164 hybrid contribution -0.947 -0.196 0.577 1.126 sum -0.400 -14.993 -5.903 16.118 Atomic orbital electron populations 1.21773 0.95632 1.01535 1.02224 1.21489 0.96184 0.95913 1.02216 1.21659 0.92676 0.97805 1.03786 1.20112 0.96464 0.84095 1.05151 1.28736 0.98158 0.98338 0.81622 1.71913 1.16615 1.02969 1.28598 1.28122 0.97603 0.96306 0.88218 1.19176 0.90059 0.85168 0.95911 1.43968 1.28490 1.34224 1.23979 1.20904 0.99524 0.90399 0.87546 1.19342 1.19206 0.97030 1.03034 0.90722 1.25002 1.00711 0.94869 0.98883 1.70108 1.40264 0.99476 1.45398 0.86133 0.81306 0.77843 0.81017 1.20131 1.21526 1.21625 1.74583 1.19882 0.99381 1.16735 1.85210 1.60419 1.17906 1.35971 0.92476 0.92660 0.92746 0.91767 0.91626 0.90639 0.91229 0.88698 0.87731 0.91443 0.90040 0.94511 0.98130 0.93626 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -0.97 5.93 -26.73 -0.16 -1.13 16 3 C -0.12 -1.27 5.20 -26.73 -0.14 -1.41 16 4 C -0.02 -0.20 5.84 -27.88 -0.16 -0.37 16 5 C 0.15 2.49 7.77 -13.05 -0.10 2.39 16 6 N -0.47 -9.40 11.55 -9.87 -0.11 -9.51 16 7 C 0.17 3.75 7.80 -156.37 -1.22 2.53 16 8 C 0.23 5.10 6.27 -5.20 -0.03 5.07 16 9 N -0.59 -15.49 2.91 -182.50 -0.53 -16.02 16 10 C 0.16 4.19 8.96 59.85 0.54 4.73 16 11 C -0.26 -7.31 9.69 -15.06 -0.15 -7.45 16 12 H 0.07 2.13 7.86 -52.49 -0.41 1.71 16 13 C 0.00 0.10 5.12 -17.43 -0.09 0.01 16 14 N -0.91 -26.88 10.53 55.49 0.58 -26.30 16 15 Si 0.91 22.39 29.57 -169.99 -5.03 17.36 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 N -0.39 -8.19 12.16 30.90 0.38 -7.81 16 20 O 0.06 1.08 11.31 18.09 0.20 1.28 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.08 1.76 8.04 -51.93 -0.42 1.34 16 32 H 0.04 1.00 7.41 -51.93 -0.38 0.62 16 33 H 0.00 0.00 8.03 -51.93 -0.42 -0.41 16 34 H 0.04 1.28 7.15 -51.93 -0.37 0.91 16 35 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 299.98 15.07 4.52 4.52 Total: -1.00 -32.33 299.98 -6.49 -38.83 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: -5.36 Total: -5.81 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.14 Total: 3.47 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.31 Total: -59.65 kcal Atomic # 8 Polarization: 1.08 SS G_CDS: 0.20 Total: 1.28 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.33 -6.49 -38.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.534 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds