Wall clock time and date at job start Sun Mar 29 2020 22:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47295 * 2 1 4 4 C 1.53004 * 109.46652 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.46680 * 180.02562 * 4 3 2 6 6 N 1.31134 * 126.55322 * 90.25146 * 5 4 3 7 7 C 1.34494 * 105.61612 * 180.12411 * 6 5 4 8 8 C 1.50700 * 126.28699 * 179.90626 * 7 6 5 9 9 N 1.46493 * 109.46999 * 269.70671 * 8 7 6 10 10 C 1.46503 * 120.00450 * 269.99930 * 9 8 7 11 11 C 1.36940 * 119.99897 * 90.00207 * 9 8 7 12 12 H 1.08002 * 119.99695 * 339.15079 * 11 9 8 13 13 C 1.38814 * 120.00203 * 159.42240 * 11 9 8 14 14 N 1.31622 * 119.99766 * 347.70754 * 13 11 9 15 15 Si 1.86799 * 120.00051 * 167.70590 * 13 11 9 16 16 H 1.48494 * 109.47085 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.46948 * 120.00006 * 15 13 11 18 18 H 1.48498 * 109.46943 * 240.00000 * 15 13 11 19 19 N 1.29950 * 107.42181 * 359.63681 * 7 6 5 20 20 O 1.21293 * 110.25413 * 0.23409 * 19 7 6 21 21 H 1.09001 * 109.47033 * 300.00466 * 1 2 3 22 22 H 1.09004 * 109.46819 * 59.99416 * 1 2 3 23 23 H 1.08995 * 109.47691 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47033 * 239.99534 * 2 1 3 25 25 H 1.09004 * 109.46819 * 120.00584 * 2 1 3 26 26 H 1.08995 * 109.47481 * 60.00260 * 3 2 1 27 27 H 1.08995 * 109.46966 * 299.99690 * 3 2 1 28 28 H 1.08992 * 109.47394 * 60.00562 * 4 3 2 29 29 H 1.08995 * 109.47183 * 299.99559 * 4 3 2 30 30 H 1.09006 * 109.46721 * 149.71173 * 8 7 6 31 31 H 1.08990 * 109.47243 * 29.71136 * 8 7 6 32 32 H 1.09000 * 109.47250 * 264.89870 * 10 9 8 33 33 H 1.09001 * 109.46544 * 24.90170 * 10 9 8 34 34 H 1.09002 * 109.47318 * 144.89472 * 10 9 8 35 35 H 0.96997 * 120.00108 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0725 2.8631 0.0013 6 7 4.3367 3.5976 1.0550 7 6 4.7511 4.7836 0.5749 8 6 5.1735 5.9778 1.3913 9 7 4.0085 6.8258 1.6552 10 6 3.6557 7.8975 0.7208 11 6 3.2491 6.6167 2.7754 12 1 3.2800 5.6612 3.2781 13 6 2.4354 7.6308 3.2617 14 7 2.5684 8.8577 2.8040 15 14 1.1518 7.2542 4.5655 16 1 1.2034 5.8103 4.9084 17 1 1.4284 8.0622 5.7802 18 1 -0.1972 7.5906 4.0437 19 7 4.7257 4.7087 -0.7221 20 8 4.3387 3.6137 -1.0720 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5140 0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6768 1.9562 -0.8900 28 1 3.9338 0.9284 -0.8891 29 1 3.9330 0.9286 0.8909 30 1 5.9210 6.5486 0.8402 31 1 5.5986 5.6399 2.3363 32 1 4.0891 8.8367 1.0646 33 1 4.0443 7.6588 -0.2692 34 1 2.5711 7.9944 0.6716 35 1 2.0001 9.5664 3.1439 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068971690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:15 Heat of formation + Delta-G solvation = 51.538135 kcal Electronic energy + Delta-G solvation = -17010.386095 eV Core-core repulsion = 14239.285266 eV Total energy + Delta-G solvation = -2771.100829 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.47572 -38.03475 -37.24048 -36.22525 -34.08633 -33.03730 -30.69407 -28.97460 -27.96412 -25.85544 -24.75651 -23.39180 -22.13061 -21.73582 -19.06532 -18.79331 -18.34324 -16.99322 -16.48191 -16.15210 -15.50667 -15.47415 -15.20452 -14.78703 -14.28317 -13.75642 -13.52387 -13.23251 -13.22474 -12.99396 -12.73970 -12.63470 -12.41812 -12.21703 -12.16908 -12.07539 -11.96372 -11.88575 -11.81662 -11.42438 -10.83219 -10.70744 -9.05052 -7.92666 -5.42974 0.29277 1.32125 1.42176 1.43307 1.54914 2.01232 2.45396 2.84299 3.16984 3.31717 3.63425 3.91633 3.99750 4.03952 4.33504 4.45255 4.55013 4.61108 4.69892 4.72186 4.75627 4.87389 4.92088 5.06162 5.10697 5.17776 5.24343 5.28894 5.40869 5.51093 5.52917 5.60955 6.19645 7.02559 7.34804 7.68565 8.12509 9.11871 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.019462 B = 0.006955 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.392639 B = 4025.015433 C = 5097.595821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C -0.118 4.118 4 C -0.017 4.017 5 C 0.174 3.826 6 N -0.501 5.501 7 C 0.156 3.844 8 C 0.230 3.770 9 N -0.603 5.603 10 C 0.180 3.820 11 C -0.265 4.265 12 H 0.069 0.931 13 C -0.048 4.048 14 N -0.936 5.936 15 Si 0.972 3.028 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.290 1.290 19 N -0.409 5.409 20 O 0.069 5.931 21 H 0.042 0.958 22 H 0.052 0.948 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.135 0.865 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 -18.196 -6.862 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C -0.157 4.157 4 C -0.056 4.056 5 C -0.047 4.047 6 N -0.235 5.235 7 C -0.120 4.120 8 C 0.100 3.900 9 N -0.326 5.326 10 C 0.035 3.965 11 C -0.395 4.395 12 H 0.087 0.913 13 C -0.243 4.243 14 N -0.582 5.582 15 Si 0.799 3.201 16 H -0.193 1.193 17 H -0.210 1.210 18 H -0.217 1.217 19 N -0.120 5.120 20 O 0.012 5.988 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.153 0.847 29 H 0.140 0.860 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.416 -17.260 -6.892 18.590 hybrid contribution -0.874 0.437 0.627 1.161 sum -0.458 -16.823 -6.265 17.957 Atomic orbital electron populations 1.21808 0.96042 1.02241 1.01440 1.21463 0.95767 0.94080 1.03774 1.21633 0.92516 0.99414 1.02112 1.20548 0.96251 0.80774 1.07980 1.29797 0.95330 0.99455 0.80085 1.71881 1.18329 1.03122 1.30153 1.27679 0.98977 0.96742 0.88561 1.19209 0.89084 0.85173 0.96531 1.44111 1.29661 1.35042 1.23751 1.20586 0.97514 0.89934 0.88432 1.19505 1.19683 0.96755 1.03532 0.91278 1.25780 1.02611 0.94744 1.01181 1.70246 1.41068 1.00159 1.46751 0.85142 0.78494 0.77938 0.78527 1.19324 1.21026 1.21668 1.74544 1.20364 1.00689 1.16355 1.85173 1.60090 1.17353 1.36207 0.93867 0.92926 0.91295 0.89508 0.90707 0.93554 0.91795 0.84667 0.86028 0.89901 0.89812 0.96262 0.96150 0.96423 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.91 71.98 0.71 -1.57 16 2 C -0.11 -1.47 5.93 30.59 0.18 -1.28 16 3 C -0.12 -2.23 5.20 30.59 0.16 -2.07 16 4 C -0.02 -0.30 5.84 29.85 0.17 -0.13 16 5 C 0.17 5.33 7.77 88.38 0.69 6.02 16 6 N -0.50 -19.74 11.55 -303.18 -3.50 -23.24 16 7 C 0.16 6.66 7.80 138.46 1.08 7.74 16 8 C 0.23 10.27 6.27 85.63 0.54 10.80 16 9 N -0.60 -32.27 2.91 -731.31 -2.13 -34.40 16 10 C 0.18 9.55 8.96 127.77 1.15 10.70 16 11 C -0.27 -15.23 9.69 84.03 0.81 -14.42 16 12 H 0.07 3.97 7.86 -2.91 -0.02 3.95 16 13 C -0.05 -2.77 5.12 84.86 0.43 -2.33 16 14 N -0.94 -56.35 10.53 21.65 0.23 -56.12 16 15 Si 0.97 46.32 29.57 68.60 2.03 48.35 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 18 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 19 N -0.41 -16.58 12.16 -60.32 -0.73 -17.31 16 20 O 0.07 2.35 11.31 74.81 0.85 3.19 16 21 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 23 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 3.37 8.07 -2.38 -0.02 3.35 16 31 H 0.08 3.63 8.04 -2.39 -0.02 3.61 16 32 H 0.02 1.07 7.41 -2.39 -0.02 1.05 16 33 H 0.02 0.96 8.03 -2.39 -0.02 0.94 16 34 H 0.02 0.99 7.15 -2.39 -0.02 0.97 16 35 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -69.87 299.98 3.72 -66.15 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: 1.06 Total: -0.08 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 5.93 Total: 13.46 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -6.14 Total: -131.07 kcal Atomic # 8 Polarization: 2.35 SS G_CDS: 0.85 Total: 3.19 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -69.87 3.72 -66.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.683 kcal (2) G-P(sol) polarization free energy of solvation -69.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds