Wall clock time and date at job start Sun Mar 29 2020 22:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46802 * 2 1 4 4 C 1.50698 * 109.47294 * 119.99398 * 2 1 3 5 5 N 1.29945 * 126.29171 * 300.03090 * 4 2 1 6 6 O 1.21302 * 110.25120 * 179.68134 * 5 4 2 7 7 C 1.33644 * 109.81136 * 0.46742 * 6 5 4 8 8 C 1.50693 * 126.55067 * 179.80038 * 7 6 5 9 9 H 1.09004 * 109.46855 * 164.68759 * 8 7 6 10 10 C 1.53001 * 109.47377 * 284.68801 * 8 7 6 11 11 N 1.46501 * 109.47410 * 44.69132 * 8 7 6 12 12 C 1.46506 * 119.99499 * 300.00099 * 11 8 7 13 13 C 1.36934 * 120.00527 * 119.99850 * 11 8 7 14 14 H 1.08000 * 120.00029 * 23.19399 * 13 11 8 15 15 C 1.38814 * 120.00038 * 203.19961 * 13 11 8 16 16 N 1.31618 * 120.00030 * 13.53964 * 15 13 11 17 17 Si 1.86799 * 119.99900 * 193.54052 * 15 13 11 18 18 H 1.48500 * 109.47342 * 59.99511 * 17 15 13 19 19 H 1.48503 * 109.47194 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47155 * 299.99895 * 17 15 13 21 21 N 1.31134 * 106.89590 * 359.54030 * 7 6 5 22 22 H 1.08998 * 109.47310 * 60.00010 * 1 2 3 23 23 H 1.09003 * 109.46772 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46846 * 299.99997 * 1 2 3 25 25 H 1.08998 * 109.47120 * 240.00444 * 2 1 3 26 26 H 1.09002 * 109.46908 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46540 * 299.99773 * 3 2 1 28 28 H 1.08994 * 109.47038 * 59.99581 * 3 2 1 29 29 H 1.09004 * 109.46964 * 180.02562 * 10 8 7 30 30 H 1.09005 * 109.46851 * 300.00092 * 10 8 7 31 31 H 1.08997 * 109.47144 * 59.99775 * 10 8 7 32 32 H 1.08998 * 109.47182 * 95.15820 * 12 11 8 33 33 H 1.08997 * 109.47126 * 335.15091 * 12 11 8 34 34 H 1.09000 * 109.46607 * 215.15514 * 12 11 8 35 35 H 0.97003 * 120.00250 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7946 -0.3748 2.4632 6 8 2.3362 -1.1513 3.2216 7 6 2.9992 -2.0782 2.5236 8 6 3.8060 -3.2194 3.0871 9 1 3.9980 -3.9510 2.3022 10 6 5.1360 -2.6872 3.6246 11 7 3.0589 -3.8552 4.1752 12 6 2.6771 -3.0751 5.3550 13 6 2.7175 -5.1785 4.0895 14 1 3.2822 -5.8416 3.4509 15 6 1.6455 -5.6676 4.8233 16 7 0.7980 -4.8329 5.3866 17 14 1.4057 -7.5106 5.0113 18 1 2.5951 -8.0991 5.6778 19 1 0.1978 -7.7712 5.8349 20 1 1.2339 -8.1267 3.6711 21 7 2.8088 -1.8082 1.2545 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 5.7198 -3.5128 4.0318 30 1 5.6919 -2.2142 2.8150 31 1 4.9441 -1.9556 4.4094 32 1 1.6615 -2.6997 5.2293 33 1 3.3627 -2.2360 5.4732 34 1 2.7231 -3.7093 6.2403 35 1 0.0491 -5.1746 5.8997 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972985.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:19 Heat of formation + Delta-G solvation = 77.248254 kcal Electronic energy + Delta-G solvation = -17624.665989 eV Core-core repulsion = 14854.680034 eV Total energy + Delta-G solvation = -2769.985955 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.78690 -36.61125 -36.39450 -34.02549 -32.49472 -30.51679 -29.06980 -27.19160 -26.16260 -24.42654 -23.98404 -22.83222 -21.08390 -19.03302 -17.28403 -17.06409 -16.62076 -15.19324 -14.82404 -14.60570 -14.08148 -13.81809 -13.34787 -13.13163 -12.53853 -12.23996 -12.05641 -11.82956 -11.78828 -11.45374 -11.35331 -10.96503 -10.89459 -10.87776 -10.80070 -10.60516 -10.51846 -10.30537 -10.06576 -9.99009 -9.18316 -8.69432 -7.03320 -5.87872 -3.38349 1.91584 2.88884 3.33011 3.38492 3.39347 3.68049 4.07153 4.36027 4.60187 5.05091 5.10528 5.20215 5.29896 5.34762 5.58351 5.60962 5.79885 5.81265 5.84542 5.89828 5.96014 6.19759 6.20436 6.29395 6.39969 6.49728 6.60097 6.74020 6.79707 7.26798 7.65389 7.71042 8.20525 8.90776 9.03856 9.63458 10.11369 11.15039 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.006728 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.450780 B = 4160.973603 C = 4521.516302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.000 4.000 3 C -0.142 4.142 4 C 0.161 3.839 5 N -0.400 5.400 6 O 0.079 5.921 7 C 0.197 3.803 8 C 0.251 3.749 9 H 0.107 0.893 10 C -0.158 4.158 11 N -0.576 5.576 12 C 0.153 3.847 13 C -0.272 4.272 14 H 0.076 0.924 15 C 0.011 3.989 16 N -0.896 5.896 17 Si 0.912 3.088 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.281 1.281 21 N -0.510 5.510 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.009 0.991 34 H 0.048 0.952 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.948 8.025 -6.949 11.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 C -0.200 4.200 4 C -0.112 4.112 5 N -0.111 5.111 6 O 0.024 5.976 7 C -0.025 4.025 8 C 0.138 3.862 9 H 0.125 0.875 10 C -0.218 4.218 11 N -0.296 5.296 12 C 0.009 3.991 13 C -0.401 4.401 14 H 0.094 0.906 15 C -0.190 4.190 16 N -0.538 5.538 17 Si 0.741 3.259 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.207 1.207 21 N -0.245 5.245 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.114 0.886 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.028 0.972 34 H 0.067 0.933 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.322 8.588 -6.981 11.555 hybrid contribution -0.420 -1.093 0.185 1.185 sum 2.901 7.496 -6.796 10.525 Atomic orbital electron populations 1.21828 0.93344 1.02599 1.02417 1.19417 0.96091 0.95008 0.91447 1.21819 1.01258 0.94437 1.02473 1.25634 0.97600 0.93537 0.94422 1.74455 1.18852 1.15092 1.02702 1.85307 1.47635 1.29705 1.34906 1.31257 0.93398 0.92469 0.85391 1.19470 0.88875 0.86085 0.91791 0.87542 1.22262 0.96602 1.01964 1.00955 1.44274 1.63701 1.08067 1.13539 1.20953 0.97037 0.92431 0.88661 1.19259 1.10426 0.83218 1.27229 0.90629 1.25169 0.95047 0.98373 1.00363 1.70086 1.14159 1.33185 1.36389 0.86233 0.77341 0.84411 0.77939 1.20626 1.21492 1.20668 1.71865 1.19042 1.14495 1.19078 0.91577 0.92276 0.91946 0.88612 0.92493 0.91581 0.91980 0.90716 0.92915 0.92325 0.94365 0.97241 0.93291 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.18 37.16 0.34 -1.55 16 2 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 3 C -0.14 -1.68 9.18 37.16 0.34 -1.34 16 4 C 0.16 3.08 6.72 -156.37 -1.05 2.03 16 5 N -0.40 -8.34 12.16 30.90 0.38 -7.96 16 6 O 0.08 1.75 9.99 18.10 0.18 1.93 16 7 C 0.20 4.21 7.20 -13.06 -0.09 4.11 16 8 C 0.25 5.12 3.26 -69.08 -0.22 4.89 16 9 H 0.11 2.14 7.87 -51.93 -0.41 1.73 16 10 C -0.16 -2.60 9.16 37.16 0.34 -2.26 16 11 N -0.58 -13.95 2.80 -174.81 -0.49 -14.44 16 12 C 0.15 3.68 7.46 59.85 0.45 4.13 16 13 C -0.27 -7.18 9.58 -15.06 -0.14 -7.32 16 14 H 0.08 1.91 7.83 -52.49 -0.41 1.49 16 15 C 0.01 0.30 5.09 -17.43 -0.09 0.21 16 16 N -0.90 -25.61 10.75 55.49 0.60 -25.02 16 17 Si 0.91 21.16 29.57 -169.99 -5.03 16.13 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 N -0.51 -10.58 11.55 -9.87 -0.11 -10.70 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.96 6.66 -51.93 -0.35 0.62 16 32 H 0.04 1.03 7.17 -51.93 -0.37 0.65 16 33 H 0.01 0.19 6.44 -51.93 -0.33 -0.14 16 34 H 0.05 1.24 7.37 -51.93 -0.38 0.86 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -29.89 293.28 -5.70 -35.59 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.19 Total: -2.57 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.45 Total: 2.61 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.37 Total: -58.11 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.18 Total: 1.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.89 -5.70 -35.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972985.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.835 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds