Wall clock time and date at job start Sun Mar 29 2020 22:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46802 * 2 1 4 4 C 1.50698 * 109.47294 * 119.99398 * 2 1 3 5 5 N 1.29945 * 126.29171 * 300.03090 * 4 2 1 6 6 O 1.21302 * 110.25120 * 179.68134 * 5 4 2 7 7 C 1.33644 * 109.81136 * 0.46742 * 6 5 4 8 8 C 1.50693 * 126.55067 * 179.80038 * 7 6 5 9 9 H 1.09004 * 109.46855 * 164.68759 * 8 7 6 10 10 C 1.53001 * 109.47377 * 284.68801 * 8 7 6 11 11 N 1.46501 * 109.47410 * 44.69132 * 8 7 6 12 12 C 1.46506 * 119.99499 * 300.00099 * 11 8 7 13 13 C 1.36934 * 120.00527 * 119.99850 * 11 8 7 14 14 H 1.08000 * 120.00029 * 23.19399 * 13 11 8 15 15 C 1.38814 * 120.00038 * 203.19961 * 13 11 8 16 16 N 1.31618 * 120.00030 * 13.53964 * 15 13 11 17 17 Si 1.86799 * 119.99900 * 193.54052 * 15 13 11 18 18 H 1.48500 * 109.47342 * 59.99511 * 17 15 13 19 19 H 1.48503 * 109.47194 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47155 * 299.99895 * 17 15 13 21 21 N 1.31134 * 106.89590 * 359.54030 * 7 6 5 22 22 H 1.08998 * 109.47310 * 60.00010 * 1 2 3 23 23 H 1.09003 * 109.46772 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46846 * 299.99997 * 1 2 3 25 25 H 1.08998 * 109.47120 * 240.00444 * 2 1 3 26 26 H 1.09002 * 109.46908 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46540 * 299.99773 * 3 2 1 28 28 H 1.08994 * 109.47038 * 59.99581 * 3 2 1 29 29 H 1.09004 * 109.46964 * 180.02562 * 10 8 7 30 30 H 1.09005 * 109.46851 * 300.00092 * 10 8 7 31 31 H 1.08997 * 109.47144 * 59.99775 * 10 8 7 32 32 H 1.08998 * 109.47182 * 95.15820 * 12 11 8 33 33 H 1.08997 * 109.47126 * 335.15091 * 12 11 8 34 34 H 1.09000 * 109.46607 * 215.15514 * 12 11 8 35 35 H 0.97003 * 120.00250 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7946 -0.3748 2.4632 6 8 2.3362 -1.1513 3.2216 7 6 2.9992 -2.0782 2.5236 8 6 3.8060 -3.2194 3.0871 9 1 3.9980 -3.9510 2.3022 10 6 5.1360 -2.6872 3.6246 11 7 3.0589 -3.8552 4.1752 12 6 2.6771 -3.0751 5.3550 13 6 2.7175 -5.1785 4.0895 14 1 3.2822 -5.8416 3.4509 15 6 1.6455 -5.6676 4.8233 16 7 0.7980 -4.8329 5.3866 17 14 1.4057 -7.5106 5.0113 18 1 2.5951 -8.0991 5.6778 19 1 0.1978 -7.7712 5.8349 20 1 1.2339 -8.1267 3.6711 21 7 2.8088 -1.8082 1.2545 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 5.7198 -3.5128 4.0318 30 1 5.6919 -2.2142 2.8150 31 1 4.9441 -1.9556 4.4094 32 1 1.6615 -2.6997 5.2293 33 1 3.3627 -2.2360 5.4732 34 1 2.7231 -3.7093 6.2403 35 1 0.0491 -5.1746 5.8997 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972985.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:18 Heat of formation + Delta-G solvation = 57.509302 kcal Electronic energy + Delta-G solvation = -17625.521934 eV Core-core repulsion = 14854.680034 eV Total energy + Delta-G solvation = -2770.841900 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.40058 -38.35408 -37.76707 -35.55802 -34.25048 -32.21827 -30.74680 -28.17494 -28.12352 -26.04904 -25.41925 -24.58753 -22.63775 -20.52936 -18.97051 -18.88086 -18.26020 -17.00662 -16.35569 -16.02295 -15.67787 -15.18453 -14.93525 -14.42489 -14.28870 -13.65973 -13.51645 -13.21003 -13.18791 -12.79656 -12.68864 -12.60944 -12.54635 -12.40077 -12.38947 -12.18756 -12.08712 -11.91475 -11.88638 -11.73380 -10.82018 -10.67323 -9.01700 -7.90518 -5.44644 0.27652 1.32332 1.48778 1.51208 1.57772 2.04354 2.44581 2.69148 3.13640 3.29187 3.54357 3.85904 4.03283 4.04715 4.30357 4.33125 4.43502 4.67751 4.71785 4.75898 4.82615 4.84469 4.93360 5.00639 5.03895 5.11962 5.20737 5.21742 5.29117 5.39227 5.61045 5.68375 6.21697 7.02447 7.27693 7.68820 8.13208 9.11300 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.006728 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.450780 B = 4160.973603 C = 4521.516302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.005 4.005 3 C -0.135 4.135 4 C 0.167 3.833 5 N -0.416 5.416 6 O 0.056 5.944 7 C 0.191 3.809 8 C 0.248 3.752 9 H 0.110 0.890 10 C -0.145 4.145 11 N -0.591 5.591 12 C 0.173 3.827 13 C -0.278 4.278 14 H 0.086 0.914 15 C -0.045 4.045 16 N -0.934 5.934 17 Si 0.976 3.024 18 H -0.270 1.270 19 H -0.297 1.297 20 H -0.275 1.275 21 N -0.519 5.519 22 H 0.104 0.896 23 H 0.040 0.960 24 H 0.048 0.952 25 H 0.110 0.890 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.002 0.998 33 H 0.038 0.962 34 H 0.027 0.973 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.976 8.426 -8.674 13.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 C -0.193 4.193 4 C -0.107 4.107 5 N -0.131 5.131 6 O 0.006 5.994 7 C -0.031 4.031 8 C 0.136 3.864 9 H 0.128 0.872 10 C -0.205 4.205 11 N -0.313 5.313 12 C 0.028 3.972 13 C -0.408 4.408 14 H 0.103 0.897 15 C -0.242 4.242 16 N -0.578 5.578 17 Si 0.803 3.197 18 H -0.195 1.195 19 H -0.224 1.224 20 H -0.201 1.201 21 N -0.254 5.254 22 H 0.123 0.877 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.128 0.872 26 H 0.073 0.927 27 H 0.120 0.880 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.021 0.979 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.395 8.986 -8.710 13.264 hybrid contribution -0.702 -1.123 0.594 1.451 sum 3.693 7.864 -8.116 11.889 Atomic orbital electron populations 1.21826 0.92401 1.01821 1.03706 1.19799 0.96819 0.96231 0.89621 1.21795 1.01132 0.92653 1.03670 1.26585 0.95977 0.92687 0.95424 1.74457 1.19625 1.15596 1.03413 1.85283 1.48212 1.30267 1.35648 1.31286 0.93174 0.92907 0.85777 1.19727 0.89523 0.86051 0.91065 0.87240 1.22150 0.94363 1.02325 1.01626 1.44383 1.64145 1.07908 1.14814 1.20619 0.95794 0.92641 0.88118 1.19670 1.09994 0.84579 1.26558 0.89659 1.25965 0.95105 1.02384 1.00705 1.70269 1.14874 1.34821 1.37852 0.85219 0.77034 0.79623 0.77806 1.19502 1.22357 1.20080 1.71891 1.19660 1.15169 1.18730 0.87695 0.94065 0.93253 0.87160 0.92655 0.88043 0.93112 0.89597 0.90413 0.92446 0.97945 0.94400 0.95426 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.18 71.98 0.66 -2.72 16 2 C 0.00 -0.12 3.39 -11.54 -0.04 -0.16 16 3 C -0.13 -2.81 9.18 71.98 0.66 -2.15 16 4 C 0.17 6.22 6.72 138.46 0.93 7.15 16 5 N -0.42 -17.33 12.16 -60.31 -0.73 -18.07 16 6 O 0.06 2.50 9.99 74.83 0.75 3.24 16 7 C 0.19 8.06 7.20 88.38 0.64 8.69 16 8 C 0.25 9.88 3.26 44.24 0.14 10.02 16 9 H 0.11 4.26 7.87 -2.38 -0.02 4.24 16 10 C -0.15 -4.46 9.16 71.98 0.66 -3.80 16 11 N -0.59 -28.69 2.80 -706.98 -1.98 -30.67 16 12 C 0.17 8.48 7.46 127.77 0.95 9.43 16 13 C -0.28 -14.67 9.58 84.03 0.80 -13.87 16 14 H 0.09 4.22 7.83 -2.91 -0.02 4.20 16 15 C -0.05 -2.47 5.09 84.86 0.43 -2.04 16 16 N -0.93 -54.98 10.75 21.65 0.23 -54.74 16 17 Si 0.98 43.81 29.57 68.60 2.03 45.84 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 21 N -0.52 -21.06 11.55 -303.20 -3.50 -24.56 16 22 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.06 1.78 6.66 -2.39 -0.02 1.76 16 32 H 0.00 0.12 7.17 -2.39 -0.02 0.11 16 33 H 0.04 1.59 6.44 -2.39 -0.02 1.57 16 34 H 0.03 1.42 7.37 -2.39 -0.02 1.41 16 35 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -65.30 293.28 3.70 -61.59 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.07 Total: 6.82 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 5.84 Total: 10.55 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -5.98 Total: -128.04 kcal Atomic # 8 Polarization: 2.50 SS G_CDS: 0.75 Total: 3.24 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -65.30 3.70 -61.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972985.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.101 kcal (2) G-P(sol) polarization free energy of solvation -65.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds