Wall clock time and date at job start Sun Mar 29 2020 22:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99594 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 119.99875 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47061 * 90.00257 * 8 6 4 10 10 H 1.48497 * 109.46906 * 209.99430 * 8 6 4 11 11 H 1.48498 * 109.47403 * 329.99876 * 8 6 4 12 12 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99996 * 179.97438 * 12 2 1 14 14 C 1.50698 * 120.00318 * 0.02562 * 12 2 1 15 15 H 1.08997 * 110.66743 * 56.77963 * 14 12 2 16 16 C 1.55009 * 110.74480 * 293.36751 * 14 12 2 17 17 C 1.55821 * 102.78348 * 241.67404 * 16 14 12 18 18 H 1.09000 * 115.93236 * 158.43858 * 17 16 14 19 19 C 1.55823 * 105.32648 * 287.30900 * 17 16 14 20 20 C 1.54999 * 102.78875 * 72.69351 * 19 17 16 21 21 C 1.55820 * 110.75283 * 179.97438 * 14 12 2 22 22 H 1.09000 * 115.38487 * 320.21218 * 21 14 12 23 23 O 1.46525 * 101.24669 * 32.41747 * 17 16 14 24 24 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 25 25 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 26 26 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 27 27 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 28 28 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 29 29 H 0.97002 * 119.99739 * 180.02562 * 7 6 4 30 30 H 1.08996 * 110.75043 * 0.02562 * 16 14 12 31 31 H 1.09003 * 110.74834 * 123.35212 * 16 14 12 32 32 H 1.09008 * 110.74747 * 191.01723 * 19 17 16 33 33 H 1.09001 * 110.75166 * 314.18279 * 19 17 16 34 34 H 1.08994 * 110.75186 * 241.67667 * 20 19 17 35 35 H 1.09000 * 110.74898 * 118.32032 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1268 2.8775 1.6728 7 7 3.3464 3.2568 2.9127 8 14 3.7336 3.9288 0.2529 9 1 2.6821 4.9078 -0.1228 10 1 4.9617 4.6551 0.6645 11 1 4.0394 3.0593 -0.9114 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 1 0.7096 -2.5256 -0.8551 16 6 0.6125 -2.6613 1.3286 17 6 1.2546 -3.9520 1.9200 18 1 1.1451 -4.0889 2.9959 19 6 0.7169 -5.1200 1.0398 20 6 1.4898 -4.9311 -0.2904 21 6 2.3714 -3.6790 -0.0028 22 1 3.2530 -3.5615 -0.6329 23 8 2.6311 -3.8362 1.4314 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6083 2.0284 -0.5138 28 1 3.1498 1.1384 -0.5139 29 1 3.8232 4.0828 3.0900 30 1 0.7720 -1.8113 1.9920 31 1 -0.4506 -2.8105 1.1396 32 1 0.9538 -6.0839 1.4905 33 1 -0.3573 -5.0224 0.8828 34 1 0.8013 -4.7375 -1.1129 35 1 2.1118 -5.8007 -0.5025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072783086.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:13 Heat of formation + Delta-G solvation = -60.885986 kcal Electronic energy + Delta-G solvation = -17879.540799 eV Core-core repulsion = 15071.272142 eV Total energy + Delta-G solvation = -2808.268656 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.94471 -38.40048 -34.89979 -32.71048 -32.10607 -30.92015 -29.58851 -28.21780 -25.96899 -23.45180 -22.07454 -21.24809 -20.18287 -18.42430 -16.94592 -16.82321 -16.37500 -15.69615 -14.93826 -14.75004 -14.34824 -13.84869 -13.67331 -12.81954 -12.56754 -12.48865 -12.30014 -12.02523 -11.75253 -11.62367 -11.49103 -11.32866 -11.02993 -10.99860 -10.82352 -10.49603 -10.38116 -10.07668 -9.76832 -9.50534 -8.87824 -8.56639 -7.66389 -6.05920 -4.04347 3.28411 3.36148 3.36948 3.41525 3.74724 4.02234 4.42184 4.55055 4.61389 4.75288 4.90510 5.07679 5.15355 5.19477 5.24905 5.29973 5.47973 5.51285 5.67434 5.76180 5.79597 5.85092 5.96282 6.03285 6.16456 6.17107 6.18405 6.67187 6.70948 7.00438 7.37679 7.64132 8.28713 8.50192 8.96409 9.03854 9.54452 11.07622 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.041385 B = 0.006514 C = 0.006449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.410847 B = 4297.150702 C = 4340.493861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.264 1.264 12 C 0.516 3.484 13 O -0.533 6.533 14 C -0.138 4.138 15 H 0.100 0.900 16 C -0.137 4.137 17 C 0.058 3.942 18 H 0.129 0.871 19 C -0.148 4.148 20 C -0.149 4.149 21 C 0.088 3.912 22 H 0.135 0.865 23 O -0.361 6.361 24 H 0.043 0.957 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.025 0.975 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.735 -14.281 -6.909 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.331 5.331 3 C 0.095 3.905 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.189 1.189 12 C 0.303 3.697 13 O -0.410 6.410 14 C -0.160 4.160 15 H 0.118 0.882 16 C -0.175 4.175 17 C 0.001 3.999 18 H 0.147 0.853 19 C -0.185 4.185 20 C -0.186 4.186 21 C 0.030 3.970 22 H 0.153 0.847 23 O -0.280 6.280 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.781 -14.108 -6.676 17.908 hybrid contribution -0.029 0.804 -0.652 1.035 sum -8.810 -13.304 -7.327 17.558 Atomic orbital electron populations 1.21794 0.81229 1.03274 1.00401 1.47793 1.06140 1.07056 1.72063 1.19657 0.92488 0.80029 0.98353 1.21335 1.36896 1.07065 0.91285 0.90815 1.24865 0.95241 0.97397 0.95581 1.69901 1.41575 1.23507 1.18653 0.86851 0.78889 0.80737 0.83292 1.20136 1.20924 1.18875 1.20069 0.87922 0.84644 0.77102 1.90669 1.13825 1.87034 1.49442 1.23056 0.98490 0.94781 0.99667 0.88215 1.23284 0.99041 0.99380 0.95818 1.24697 0.82443 0.93718 0.99083 0.85336 1.23260 1.00010 0.99323 0.95953 1.23255 0.98881 0.98747 0.97746 1.24495 0.96815 0.91507 0.84152 0.84750 1.90180 1.24582 1.93425 1.19785 0.93858 0.91661 0.90667 0.95753 0.94171 0.92596 0.89606 0.89991 0.91000 0.90676 0.90642 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.09 59.85 0.60 1.79 16 2 N -0.60 -12.62 2.86 -182.96 -0.52 -13.14 16 3 C 0.22 5.41 4.23 -5.19 -0.02 5.39 16 4 C -0.53 -15.53 9.94 -34.44 -0.34 -15.87 16 5 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 8 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 12 C 0.52 10.88 6.88 -10.99 -0.08 10.80 16 13 O -0.53 -13.72 15.49 5.55 0.09 -13.64 16 14 C -0.14 -2.08 2.00 -89.21 -0.18 -2.26 16 15 H 0.10 1.20 7.72 -51.93 -0.40 0.79 16 16 C -0.14 -1.84 4.21 -24.16 -0.10 -1.94 16 17 C 0.06 0.76 5.71 -23.72 -0.14 0.62 16 18 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 19 C -0.15 -1.45 6.52 -24.17 -0.16 -1.61 16 20 C -0.15 -1.56 6.52 -24.18 -0.16 -1.72 16 21 C 0.09 1.31 4.60 -23.73 -0.11 1.20 16 22 H 0.13 2.10 7.78 -51.93 -0.40 1.69 16 23 O -0.36 -6.31 11.65 -35.23 -0.41 -6.72 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.84 4.61 -51.93 -0.24 0.60 16 26 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 27 H 0.02 0.57 7.50 -51.93 -0.39 0.18 16 28 H 0.04 1.09 6.48 -51.93 -0.34 0.76 16 29 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 30 H 0.09 1.40 7.47 -51.93 -0.39 1.01 16 31 H 0.08 0.81 7.43 -51.93 -0.39 0.42 16 32 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.07 0.60 7.81 -51.93 -0.41 0.19 16 34 H 0.07 0.65 7.81 -51.93 -0.41 0.25 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 279.97 15.07 4.22 4.22 Total: -1.00 -35.88 279.97 -6.35 -42.23 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.05 Total: -1.23 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -0.77 Total: -1.56 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.25 Total: -40.57 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.32 Total: -20.36 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -35.88 -6.35 -42.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072783086.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.657 kcal (2) G-P(sol) polarization free energy of solvation -35.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds