Wall clock time and date at job start Sun Mar 29 2020 22:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99594 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 119.99875 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47061 * 90.00257 * 8 6 4 10 10 H 1.48497 * 109.46906 * 209.99430 * 8 6 4 11 11 H 1.48498 * 109.47403 * 329.99876 * 8 6 4 12 12 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99996 * 179.97438 * 12 2 1 14 14 C 1.50698 * 120.00318 * 0.02562 * 12 2 1 15 15 H 1.08997 * 110.66743 * 56.77963 * 14 12 2 16 16 C 1.55009 * 110.74480 * 293.36751 * 14 12 2 17 17 C 1.55821 * 102.78348 * 241.67404 * 16 14 12 18 18 H 1.09000 * 115.93236 * 158.43858 * 17 16 14 19 19 C 1.55823 * 105.32648 * 287.30900 * 17 16 14 20 20 C 1.54999 * 102.78875 * 72.69351 * 19 17 16 21 21 C 1.55820 * 110.75283 * 179.97438 * 14 12 2 22 22 H 1.09000 * 115.38487 * 320.21218 * 21 14 12 23 23 O 1.46525 * 101.24669 * 32.41747 * 17 16 14 24 24 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 25 25 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 26 26 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 27 27 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 28 28 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 29 29 H 0.97002 * 119.99739 * 180.02562 * 7 6 4 30 30 H 1.08996 * 110.75043 * 0.02562 * 16 14 12 31 31 H 1.09003 * 110.74834 * 123.35212 * 16 14 12 32 32 H 1.09008 * 110.74747 * 191.01723 * 19 17 16 33 33 H 1.09001 * 110.75166 * 314.18279 * 19 17 16 34 34 H 1.08994 * 110.75186 * 241.67667 * 20 19 17 35 35 H 1.09000 * 110.74898 * 118.32032 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1268 2.8775 1.6728 7 7 3.3464 3.2568 2.9127 8 14 3.7336 3.9288 0.2529 9 1 2.6821 4.9078 -0.1228 10 1 4.9617 4.6551 0.6645 11 1 4.0394 3.0593 -0.9114 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 1 0.7096 -2.5256 -0.8551 16 6 0.6125 -2.6613 1.3286 17 6 1.2546 -3.9520 1.9200 18 1 1.1451 -4.0889 2.9959 19 6 0.7169 -5.1200 1.0398 20 6 1.4898 -4.9311 -0.2904 21 6 2.3714 -3.6790 -0.0028 22 1 3.2530 -3.5615 -0.6329 23 8 2.6311 -3.8362 1.4314 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6083 2.0284 -0.5138 28 1 3.1498 1.1384 -0.5139 29 1 3.8232 4.0828 3.0900 30 1 0.7720 -1.8113 1.9920 31 1 -0.4506 -2.8105 1.1396 32 1 0.9538 -6.0839 1.4905 33 1 -0.3573 -5.0224 0.8828 34 1 0.8013 -4.7375 -1.1129 35 1 2.1118 -5.8007 -0.5025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072783086.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:13 Heat of formation + Delta-G solvation = -88.154488 kcal Electronic energy + Delta-G solvation = -17880.723250 eV Core-core repulsion = 15071.272142 eV Total energy + Delta-G solvation = -2809.451107 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.10878 -39.95640 -36.66499 -34.80001 -33.40500 -32.07398 -30.61094 -30.06152 -27.43746 -25.15241 -23.34002 -22.48803 -21.20465 -19.94145 -19.17395 -18.10532 -17.71346 -17.15664 -16.35645 -16.18097 -15.96605 -15.23109 -15.03603 -14.60179 -14.13406 -13.84138 -13.70077 -13.53688 -13.30389 -12.91569 -12.70377 -12.50374 -12.39977 -12.39169 -12.04962 -11.97793 -11.84071 -11.79358 -11.38268 -10.88587 -10.84049 -10.50698 -9.40467 -8.37026 -6.42470 1.28718 1.34209 1.45132 1.77389 2.28601 2.31085 2.92056 2.96914 3.45263 3.58157 3.73463 3.91982 4.00089 4.12810 4.30245 4.34746 4.44498 4.53990 4.61028 4.63399 4.78222 4.86843 4.94011 4.96332 4.99892 5.03521 5.13074 5.18891 5.29179 5.43506 5.60700 5.71090 6.21127 6.58455 6.69234 7.18502 7.42132 8.80355 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.041385 B = 0.006514 C = 0.006449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.410847 B = 4297.150702 C = 4340.493861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.223 3.777 4 C -0.538 4.538 5 H 0.024 0.976 6 C 0.008 3.992 7 N -0.946 5.946 8 Si 0.952 3.048 9 H -0.247 1.247 10 H -0.281 1.281 11 H -0.258 1.258 12 C 0.501 3.499 13 O -0.597 6.597 14 C -0.127 4.127 15 H 0.146 0.854 16 C -0.133 4.133 17 C 0.046 3.954 18 H 0.135 0.865 19 C -0.134 4.134 20 C -0.135 4.135 21 C 0.073 3.927 22 H 0.111 0.889 23 O -0.414 6.414 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.016 0.984 29 H 0.269 0.731 30 H 0.045 0.955 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.462 -15.372 -9.244 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.338 5.338 3 C 0.100 3.900 4 C -0.577 4.577 5 H 0.042 0.958 6 C -0.190 4.190 7 N -0.586 5.586 8 Si 0.774 3.226 9 H -0.171 1.171 10 H -0.207 1.207 11 H -0.182 1.182 12 C 0.291 3.709 13 O -0.478 6.478 14 C -0.148 4.148 15 H 0.163 0.837 16 C -0.171 4.171 17 C -0.011 4.011 18 H 0.153 0.847 19 C -0.172 4.172 20 C -0.172 4.172 21 C 0.015 3.985 22 H 0.128 0.872 23 O -0.333 6.333 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.150 0.850 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.580 -15.217 -9.015 21.141 hybrid contribution 0.832 1.110 0.199 1.401 sum -10.748 -14.107 -8.816 19.805 Atomic orbital electron populations 1.22129 0.77597 1.04239 1.03201 1.47940 1.08503 1.05782 1.71585 1.19322 0.92695 0.82767 0.95212 1.21565 1.37010 1.06713 0.92378 0.95785 1.25918 0.95185 0.99017 0.98833 1.70061 1.42721 1.24469 1.21367 0.85652 0.78911 0.78884 0.79141 1.17075 1.20651 1.18180 1.21296 0.87712 0.86571 0.75349 1.90626 1.16858 1.88119 1.52169 1.23131 0.98662 0.90782 1.02243 0.83688 1.23331 1.01652 0.98138 0.93938 1.25024 0.80647 0.95134 1.00296 0.84713 1.23244 1.01599 0.97965 0.94345 1.23230 0.98569 0.96270 0.99159 1.24635 0.96985 0.93857 0.83011 0.87151 1.90139 1.27794 1.93837 1.21579 0.89868 0.88828 0.91773 0.93107 0.96576 0.92221 0.93630 0.84986 0.90135 0.87288 0.87556 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.99 10.09 127.77 1.29 3.28 16 2 N -0.61 -25.52 2.86 -851.14 -2.43 -27.95 16 3 C 0.22 11.32 4.23 85.63 0.36 11.69 16 4 C -0.54 -33.07 9.94 25.60 0.25 -32.81 16 5 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 6 C 0.01 0.50 5.47 84.66 0.46 0.97 16 7 N -0.95 -61.59 13.96 21.45 0.30 -61.29 16 8 Si 0.95 45.74 27.47 68.60 1.88 47.62 16 9 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 11 H -0.26 -12.03 6.54 99.48 0.65 -11.38 16 12 C 0.50 21.45 6.88 87.66 0.60 22.06 16 13 O -0.60 -32.45 15.49 -3.05 -0.05 -32.50 16 14 C -0.13 -3.58 2.00 -9.88 -0.02 -3.60 16 15 H 0.15 2.74 7.72 -2.39 -0.02 2.72 16 16 C -0.13 -3.25 4.21 32.26 0.14 -3.12 16 17 C 0.05 1.12 5.71 32.55 0.19 1.30 16 18 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 19 C -0.13 -2.05 6.52 32.25 0.21 -1.84 16 20 C -0.13 -2.32 6.52 32.25 0.21 -2.11 16 21 C 0.07 2.12 4.60 32.54 0.15 2.27 16 22 H 0.11 3.62 7.78 -2.39 -0.02 3.60 16 23 O -0.41 -14.76 11.65 -148.98 -1.74 -16.50 16 24 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.09 2.09 4.61 -2.39 -0.01 2.08 16 26 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 27 H 0.05 2.31 7.50 -2.39 -0.02 2.29 16 28 H 0.02 0.90 6.48 -2.39 -0.02 0.88 16 29 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 30 H 0.04 1.49 7.47 -2.39 -0.02 1.47 16 31 H 0.13 1.88 7.43 -2.39 -0.02 1.86 16 32 H 0.08 1.13 8.14 -2.38 -0.02 1.12 16 33 H 0.11 0.99 7.81 -2.39 -0.02 0.98 16 34 H 0.11 1.21 7.81 -2.39 -0.02 1.19 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -86.20 279.97 2.83 -83.37 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.02 Total: 9.16 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 3.84 Total: -1.92 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -2.13 Total: -89.24 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -1.78 Total: -48.99 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.62 kcal Total: -86.20 2.83 -83.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072783086.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.787 kcal (2) G-P(sol) polarization free energy of solvation -86.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds