Wall clock time and date at job start Sun Mar 29 2020 22:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47077 * 2 1 4 4 N 1.29939 * 126.28972 * 90.02907 * 3 2 1 5 5 O 1.21305 * 110.25484 * 179.97438 * 4 3 2 6 6 C 1.33642 * 109.80929 * 359.97438 * 5 4 3 7 7 C 1.50701 * 126.55361 * 180.02562 * 6 5 4 8 8 N 1.46894 * 109.47054 * 269.97525 * 7 6 5 9 9 C 1.46900 * 111.00364 * 66.04167 * 8 7 6 10 10 C 1.53005 * 109.46694 * 61.26137 * 9 8 7 11 11 C 1.46896 * 110.99995 * 190.00068 * 8 7 6 12 12 C 1.50697 * 109.47356 * 164.68719 * 11 8 7 13 13 H 1.07997 * 119.99943 * 1.23706 * 12 11 8 14 14 C 1.37884 * 120.00167 * 181.22929 * 12 11 8 15 15 N 1.31514 * 119.99944 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99910 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47227 * 89.99605 * 16 14 12 18 18 H 1.48493 * 109.47167 * 209.99946 * 16 14 12 19 19 H 1.48507 * 109.47200 * 329.99538 * 16 14 12 20 20 N 1.31133 * 106.89630 * 359.76493 * 6 5 4 21 21 H 1.09000 * 109.47171 * 59.99955 * 1 2 3 22 22 H 1.08995 * 109.47134 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46799 * 299.99745 * 1 2 3 24 24 H 1.09000 * 109.46674 * 239.99717 * 2 1 3 25 25 H 1.09000 * 109.47171 * 120.00045 * 2 1 3 26 26 H 1.09002 * 109.47048 * 29.97677 * 7 6 5 27 27 H 1.09005 * 109.46869 * 149.97068 * 7 6 5 28 28 H 1.08992 * 109.47388 * 181.26104 * 9 8 7 29 29 H 1.08998 * 109.46983 * 301.26419 * 9 8 7 30 30 H 1.08998 * 109.46717 * 179.47451 * 10 9 8 31 31 H 1.08998 * 109.47014 * 299.47672 * 10 9 8 32 32 H 1.08997 * 109.46957 * 59.47997 * 10 9 8 33 33 H 1.09007 * 109.47058 * 284.69032 * 11 8 7 34 34 H 1.09003 * 109.47493 * 44.68759 * 11 8 7 35 35 H 0.97000 * 119.99693 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2892 2.1457 1.0474 5 8 2.6781 3.2448 0.7123 6 6 2.7077 3.3276 -0.6212 7 6 3.1310 4.5219 -1.4371 8 7 1.9630 5.3721 -1.7029 9 6 1.4478 5.9625 -0.4604 10 6 2.5282 6.8417 0.1726 11 6 2.2835 6.4140 -2.6876 12 6 1.0068 7.0168 -3.2148 13 1 0.0534 6.6753 -2.8398 14 6 1.0561 8.0044 -4.1757 15 7 -0.0580 8.5307 -4.6354 16 14 2.7053 8.5946 -4.8247 17 1 3.0961 7.7763 -6.0006 18 1 2.5974 10.0199 -5.2272 19 1 3.7334 8.4569 -3.7620 20 7 2.3034 2.1692 -1.0841 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8779 5.0926 -0.8853 27 1 3.5570 4.1839 -2.3818 28 1 0.5701 6.5691 -0.6830 29 1 1.1737 5.1676 0.2332 30 1 2.1428 7.2872 1.0897 31 1 3.4025 6.2332 0.4038 32 1 2.8089 7.6311 -0.5246 33 1 2.8830 7.1907 -2.2126 34 1 2.8452 5.9746 -3.5119 35 1 -0.0233 9.2257 -5.3112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:52 Heat of formation + Delta-G solvation = 47.364936 kcal Electronic energy + Delta-G solvation = -17252.195292 eV Core-core repulsion = 14480.913499 eV Total energy + Delta-G solvation = -2771.281793 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.60382 -39.26005 -37.35032 -35.03310 -34.46384 -32.59454 -31.39758 -30.12101 -27.12823 -26.05235 -24.90282 -24.03920 -22.29067 -20.99418 -19.20961 -18.89526 -18.32810 -17.01143 -16.63233 -16.23260 -15.93815 -15.52380 -14.91520 -14.80423 -14.50463 -14.03590 -13.93610 -13.49937 -13.30816 -12.95192 -12.83869 -12.66396 -12.42539 -12.38082 -12.34016 -12.21021 -11.94207 -11.86216 -11.61044 -11.47253 -10.97015 -10.72025 -9.10568 -8.22855 -6.26570 0.06796 1.19269 1.42050 1.43317 1.53196 1.76138 2.39911 2.65996 3.02983 3.10304 3.21573 3.86140 4.09516 4.15707 4.21024 4.24682 4.28221 4.43644 4.50738 4.59814 4.72095 4.83945 4.86925 4.92168 4.97256 5.03946 5.05694 5.20765 5.23618 5.42319 5.56302 5.90742 6.21291 6.57693 6.79532 7.13227 7.36048 8.94213 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.005722 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.342998 B = 4891.849106 C = 5143.146121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.031 4.031 3 C 0.165 3.835 4 N -0.407 5.407 5 O 0.066 5.934 6 C 0.207 3.793 7 C 0.136 3.864 8 N -0.541 5.541 9 C 0.058 3.942 10 C -0.182 4.182 11 C 0.171 3.829 12 C -0.514 4.514 13 H 0.030 0.970 14 C 0.007 3.993 15 N -0.953 5.953 16 Si 0.947 3.053 17 H -0.267 1.267 18 H -0.288 1.288 19 H -0.237 1.237 20 N -0.495 5.495 21 H 0.044 0.956 22 H 0.099 0.901 23 H 0.048 0.952 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.018 0.982 34 H 0.039 0.961 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.045 -12.376 9.855 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.108 4.108 4 N -0.118 5.118 5 O 0.012 5.988 6 C -0.014 4.014 7 C 0.007 3.993 8 N -0.266 5.266 9 C -0.070 4.070 10 C -0.241 4.241 11 C 0.045 3.955 12 C -0.552 4.552 13 H 0.048 0.952 14 C -0.190 4.190 15 N -0.593 5.593 16 Si 0.770 3.230 17 H -0.192 1.192 18 H -0.214 1.214 19 H -0.160 1.160 20 N -0.229 5.229 21 H 0.063 0.937 22 H 0.118 0.882 23 H 0.067 0.933 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.117 0.883 27 H 0.145 0.855 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.057 0.943 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.423 -13.134 10.052 18.560 hybrid contribution 0.498 1.285 -0.292 1.408 sum 8.921 -11.849 9.759 17.755 Atomic orbital electron populations 1.21717 0.92879 1.04081 1.01491 1.20155 0.97087 0.83735 1.06014 1.26630 0.99442 1.01668 0.83045 1.74554 1.19222 0.93382 1.24612 1.85259 1.61174 1.27259 1.25133 1.28964 0.94200 0.96629 0.81621 1.20781 0.93124 0.86820 0.98571 1.61983 1.30126 1.23301 1.11221 1.21994 0.98529 0.96947 0.89557 1.22316 0.99746 1.00589 1.01418 1.20052 0.95539 0.89162 0.90764 1.21197 0.93078 1.19148 1.21772 0.95156 1.25862 1.00579 0.96216 0.96373 1.70067 1.29568 1.28660 1.31051 0.85716 0.79934 0.77410 0.79907 1.19173 1.21389 1.16031 1.71945 1.18056 1.02967 1.29960 0.93663 0.88213 0.93331 0.87346 0.87296 0.88347 0.85549 0.92413 0.92339 0.90890 0.90961 0.92631 0.96411 0.94341 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.90 71.98 0.71 -2.00 16 2 C -0.03 -0.62 6.56 29.85 0.20 -0.42 16 3 C 0.16 4.78 7.47 138.46 1.03 5.82 16 4 N -0.41 -12.53 12.16 -60.31 -0.73 -13.26 16 5 O 0.07 2.04 10.69 74.84 0.80 2.84 16 6 C 0.21 6.46 7.07 88.38 0.62 7.08 16 7 C 0.14 4.03 5.36 85.56 0.46 4.49 16 8 N -0.54 -20.90 4.65 -905.38 -4.21 -25.11 16 9 C 0.06 2.09 5.74 86.30 0.50 2.58 16 10 C -0.18 -5.32 9.27 71.98 0.67 -4.65 16 11 C 0.17 7.43 3.66 85.56 0.31 7.74 16 12 C -0.51 -28.65 9.12 25.60 0.23 -28.41 16 13 H 0.03 1.94 7.68 -2.91 -0.02 1.92 16 14 C 0.01 0.37 5.47 84.66 0.46 0.83 16 15 N -0.95 -58.91 13.96 21.45 0.30 -58.61 16 16 Si 0.95 41.64 27.44 68.60 1.88 43.52 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.24 -9.22 6.58 99.48 0.65 -8.56 16 20 N -0.49 -16.27 11.55 -303.18 -3.50 -19.77 16 21 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.10 2.34 6.05 -2.39 -0.01 2.32 16 27 H 0.13 3.46 7.87 -2.38 -0.02 3.44 16 28 H 0.06 2.47 7.15 -2.39 -0.02 2.45 16 29 H 0.06 2.02 6.76 -2.39 -0.02 2.00 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.76 6.33 -2.39 -0.02 1.74 16 32 H 0.05 1.78 6.22 -2.39 -0.01 1.76 16 33 H 0.02 0.75 5.02 -2.38 -0.01 0.74 16 34 H 0.04 1.60 7.18 -2.39 -0.02 1.58 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -68.11 288.29 0.77 -67.35 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.03 Total: 9.99 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 5.20 Total: -6.94 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -8.15 Total: -116.76 kcal Atomic # 8 Polarization: 2.04 SS G_CDS: 0.80 Total: 2.84 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.88 Total: 43.52 kcal Total: -68.11 0.77 -67.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.711 kcal (2) G-P(sol) polarization free energy of solvation -68.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds