Wall clock time and date at job start Sun Mar 29 2020 22:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46909 * 109.46949 * 2 1 4 4 C 1.46898 * 110.99824 * 73.17004 * 3 2 1 5 5 C 1.50700 * 109.47238 * 285.92180 * 4 3 2 6 6 H 1.08001 * 120.00147 * 358.19884 * 5 4 3 7 7 C 1.37885 * 120.00204 * 178.19946 * 5 4 3 8 8 N 1.31509 * 120.00253 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99575 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48501 * 109.47001 * 209.99801 * 9 7 5 12 12 H 1.48496 * 109.47361 * 329.99648 * 9 7 5 13 13 C 1.46893 * 110.99654 * 197.12503 * 3 2 1 14 14 H 1.09006 * 109.46871 * 186.04822 * 13 3 2 15 15 C 1.52998 * 109.47158 * 306.04478 * 13 3 2 16 16 C 1.50695 * 109.47367 * 66.04486 * 13 3 2 17 17 N 1.31136 * 126.54968 * 134.70757 * 16 13 3 18 18 C 1.34491 * 105.61555 * 179.91722 * 17 16 13 19 19 C 1.50699 * 126.28914 * 180.12727 * 18 17 16 20 20 N 1.29944 * 107.42450 * 0.35488 * 18 17 16 21 21 O 1.21306 * 110.25300 * 359.77505 * 20 18 17 22 22 H 1.08993 * 109.46777 * 167.75706 * 1 2 3 23 23 H 1.08999 * 109.46937 * 287.75871 * 1 2 3 24 24 H 1.09005 * 109.46569 * 47.75860 * 1 2 3 25 25 H 1.08996 * 109.47199 * 239.99944 * 2 1 3 26 26 H 1.08998 * 109.46667 * 119.99398 * 2 1 3 27 27 H 1.08996 * 109.47297 * 45.92266 * 4 3 2 28 28 H 1.09002 * 109.46929 * 165.92372 * 4 3 2 29 29 H 0.96997 * 120.00371 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47504 * 60.00091 * 15 13 3 31 31 H 1.09003 * 109.47439 * 180.02562 * 15 13 3 32 32 H 1.09004 * 109.47135 * 300.00289 * 15 13 3 33 33 H 1.09004 * 109.46955 * 270.24267 * 19 18 17 34 34 H 1.09000 * 109.47279 * 30.24304 * 19 18 17 35 35 H 1.08999 * 109.47418 * 150.24550 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.8208 2.0137 1.3127 5 6 0.3604 2.3350 1.4997 6 1 -0.3447 2.1227 0.7096 7 6 -0.0757 2.9000 2.6795 8 7 -1.3501 3.1808 2.8425 9 14 1.1440 3.2678 4.0457 10 1 1.6793 4.6423 3.8746 11 1 0.4613 3.1625 5.3603 12 1 2.2609 2.2908 3.9884 13 6 3.4308 1.4445 -0.4038 14 1 3.7979 2.4648 -0.2924 15 6 4.2544 0.5067 0.4810 16 6 3.5597 1.0186 -1.8436 17 7 4.2668 1.6140 -2.7738 18 6 4.0836 0.8857 -3.8895 19 6 4.6906 1.1577 -5.2418 20 7 3.2832 -0.0927 -3.5885 21 8 2.9705 -0.0345 -2.4179 22 1 -0.3632 -1.0042 -0.2179 23 1 -0.3633 0.3134 0.9787 24 1 -0.3633 0.6909 -0.7609 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.1455 1.3292 2.0963 28 1 2.4049 2.9324 1.3678 29 1 -1.6569 3.5779 3.6725 30 1 3.8874 -0.5136 0.3697 31 1 5.3016 0.5511 0.1817 32 1 4.1612 0.8147 1.5225 33 1 4.0286 1.8086 -5.8129 34 1 5.6577 1.6442 -5.1148 35 1 4.8245 0.2170 -5.7758 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:20 Heat of formation + Delta-G solvation = 78.905499 kcal Electronic energy + Delta-G solvation = -17663.176049 eV Core-core repulsion = 14893.261958 eV Total energy + Delta-G solvation = -2769.914091 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.36790 -38.18699 -35.90897 -33.53110 -32.31027 -31.01000 -29.44581 -28.85090 -26.93941 -24.57913 -23.35941 -22.14593 -21.16439 -19.52890 -17.90877 -17.29779 -16.67566 -15.47069 -15.03836 -14.44994 -14.16629 -13.89160 -13.61621 -13.50281 -13.00238 -12.72962 -12.57075 -12.24158 -11.99824 -11.67168 -11.44381 -11.20833 -11.13079 -10.99720 -10.86461 -10.61687 -10.44273 -10.14829 -9.86499 -9.67389 -9.08729 -8.56157 -7.64000 -6.07295 -4.04050 1.34771 2.37328 3.02278 3.25281 3.32176 3.34007 3.70027 4.13276 4.38249 4.59698 4.93662 5.10885 5.22212 5.29247 5.30113 5.39867 5.56526 5.69363 5.78495 5.88323 5.96111 6.02389 6.11943 6.20779 6.35178 6.53571 6.66602 6.77912 6.97715 7.33576 7.53462 7.70702 7.85279 8.36923 8.58850 9.03570 9.52526 11.04565 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.038006 B = 0.006390 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.539997 B = 4381.124147 C = 4612.182740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 N -0.520 5.520 4 C 0.163 3.837 5 C -0.511 4.511 6 H 0.095 0.905 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.869 3.131 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.165 3.835 14 H 0.123 0.877 15 C -0.184 4.184 16 C 0.219 3.781 17 N -0.491 5.491 18 C 0.162 3.838 19 C -0.059 4.059 20 N -0.396 5.396 21 O 0.081 5.919 22 H 0.034 0.966 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.033 0.967 27 H 0.000 1.000 28 H 0.025 0.975 29 H 0.264 0.736 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.789 -5.562 -8.309 15.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 N -0.245 5.245 4 C 0.038 3.962 5 C -0.549 4.549 6 H 0.113 0.887 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.696 3.304 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.053 3.947 14 H 0.141 0.859 15 C -0.244 4.244 16 C -0.001 4.001 17 N -0.225 5.225 18 C -0.111 4.111 19 C -0.117 4.117 20 N -0.107 5.107 21 O 0.026 5.974 22 H 0.052 0.948 23 H 0.111 0.889 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.018 0.982 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.379 -5.503 -9.278 15.680 hybrid contribution 0.972 -0.078 1.513 1.801 sum 12.351 -5.582 -7.765 15.620 Atomic orbital electron populations 1.22029 0.93900 0.99022 1.05312 1.22172 0.97713 0.88206 0.99094 1.62289 1.11118 1.17971 1.33162 1.20296 0.99214 0.93496 0.83218 1.21229 0.91342 1.40143 1.02236 0.88671 1.24880 0.94932 0.95340 0.98047 1.69871 1.13944 1.43487 1.26351 0.86966 0.81936 0.79240 0.82240 1.20173 1.21236 1.19247 1.20383 0.92501 1.00781 0.81001 0.85913 1.22520 1.00181 1.00496 1.01195 1.28881 0.88424 0.84121 0.98714 1.71857 1.24031 1.27812 0.98849 1.25825 0.97094 0.89971 0.98203 1.20076 1.01068 1.03356 0.87215 1.74584 1.17373 1.23313 0.95471 1.85359 1.54049 1.41900 1.16140 0.94751 0.88868 0.92512 0.92081 0.94872 0.98221 0.95657 0.92615 0.91485 0.91894 0.90061 0.89503 0.89288 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.48 37.16 0.31 -2.54 16 2 C 0.06 1.02 4.36 -3.82 -0.02 1.01 16 3 N -0.52 -10.20 4.42 -229.47 -1.01 -11.22 16 4 C 0.16 3.62 3.19 -4.98 -0.02 3.60 16 5 C -0.51 -13.51 7.65 -34.44 -0.26 -13.77 16 6 H 0.10 2.72 5.77 -52.49 -0.30 2.42 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -26.40 13.96 55.43 0.77 -25.63 16 9 Si 0.87 20.34 27.50 -169.99 -4.68 15.66 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -5.92 6.49 56.52 0.37 -5.56 16 13 C 0.16 2.69 2.85 -68.87 -0.20 2.50 16 14 H 0.12 1.95 7.84 -51.93 -0.41 1.54 16 15 C -0.18 -2.52 8.50 37.16 0.32 -2.21 16 16 C 0.22 3.67 7.15 -13.06 -0.09 3.58 16 17 N -0.49 -8.13 11.55 -9.87 -0.11 -8.24 16 18 C 0.16 2.44 8.22 -156.38 -1.28 1.16 16 19 C -0.06 -0.59 10.51 36.01 0.38 -0.21 16 20 N -0.40 -6.61 12.16 30.90 0.38 -6.23 16 21 O 0.08 1.38 8.57 18.10 0.16 1.54 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.09 2.10 5.81 -51.93 -0.30 1.80 16 24 H 0.06 1.18 7.73 -51.93 -0.40 0.78 16 25 H 0.06 1.04 4.92 -51.93 -0.26 0.79 16 26 H 0.03 0.58 6.97 -51.93 -0.36 0.22 16 27 H 0.00 0.00 6.09 -51.93 -0.32 -0.31 16 28 H 0.03 0.56 7.29 -51.93 -0.38 0.18 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.07 0.90 6.72 -51.93 -0.35 0.55 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.13 7.12 -51.93 -0.37 0.76 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 280.52 15.07 4.23 4.23 Total: -1.00 -29.79 280.52 -5.96 -35.75 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.73 Total: -0.79 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.96 Total: -5.07 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.02 Total: -51.32 kcal Atomic # 8 Polarization: 1.38 SS G_CDS: 0.16 Total: 1.54 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.68 Total: 15.66 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.79 -5.96 -35.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.654 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds