Wall clock time and date at job start Sun Mar 29 2020 22:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46909 * 109.46949 * 2 1 4 4 C 1.46898 * 110.99824 * 73.17004 * 3 2 1 5 5 C 1.50700 * 109.47238 * 285.92180 * 4 3 2 6 6 H 1.08001 * 120.00147 * 358.19884 * 5 4 3 7 7 C 1.37885 * 120.00204 * 178.19946 * 5 4 3 8 8 N 1.31509 * 120.00253 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99575 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48501 * 109.47001 * 209.99801 * 9 7 5 12 12 H 1.48496 * 109.47361 * 329.99648 * 9 7 5 13 13 C 1.46893 * 110.99654 * 197.12503 * 3 2 1 14 14 H 1.09006 * 109.46871 * 186.04822 * 13 3 2 15 15 C 1.52998 * 109.47158 * 306.04478 * 13 3 2 16 16 C 1.50695 * 109.47367 * 66.04486 * 13 3 2 17 17 N 1.31136 * 126.54968 * 134.70757 * 16 13 3 18 18 C 1.34491 * 105.61555 * 179.91722 * 17 16 13 19 19 C 1.50699 * 126.28914 * 180.12727 * 18 17 16 20 20 N 1.29944 * 107.42450 * 0.35488 * 18 17 16 21 21 O 1.21306 * 110.25300 * 359.77505 * 20 18 17 22 22 H 1.08993 * 109.46777 * 167.75706 * 1 2 3 23 23 H 1.08999 * 109.46937 * 287.75871 * 1 2 3 24 24 H 1.09005 * 109.46569 * 47.75860 * 1 2 3 25 25 H 1.08996 * 109.47199 * 239.99944 * 2 1 3 26 26 H 1.08998 * 109.46667 * 119.99398 * 2 1 3 27 27 H 1.08996 * 109.47297 * 45.92266 * 4 3 2 28 28 H 1.09002 * 109.46929 * 165.92372 * 4 3 2 29 29 H 0.96997 * 120.00371 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47504 * 60.00091 * 15 13 3 31 31 H 1.09003 * 109.47439 * 180.02562 * 15 13 3 32 32 H 1.09004 * 109.47135 * 300.00289 * 15 13 3 33 33 H 1.09004 * 109.46955 * 270.24267 * 19 18 17 34 34 H 1.09000 * 109.47279 * 30.24304 * 19 18 17 35 35 H 1.08999 * 109.47418 * 150.24550 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.8208 2.0137 1.3127 5 6 0.3604 2.3350 1.4997 6 1 -0.3447 2.1227 0.7096 7 6 -0.0757 2.9000 2.6795 8 7 -1.3501 3.1808 2.8425 9 14 1.1440 3.2678 4.0457 10 1 1.6793 4.6423 3.8746 11 1 0.4613 3.1625 5.3603 12 1 2.2609 2.2908 3.9884 13 6 3.4308 1.4445 -0.4038 14 1 3.7979 2.4648 -0.2924 15 6 4.2544 0.5067 0.4810 16 6 3.5597 1.0186 -1.8436 17 7 4.2668 1.6140 -2.7738 18 6 4.0836 0.8857 -3.8895 19 6 4.6906 1.1577 -5.2418 20 7 3.2832 -0.0927 -3.5885 21 8 2.9705 -0.0345 -2.4179 22 1 -0.3632 -1.0042 -0.2179 23 1 -0.3633 0.3134 0.9787 24 1 -0.3633 0.6909 -0.7609 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.1455 1.3292 2.0963 28 1 2.4049 2.9324 1.3678 29 1 -1.6569 3.5779 3.6725 30 1 3.8874 -0.5136 0.3697 31 1 5.3016 0.5511 0.1817 32 1 4.1612 0.8147 1.5225 33 1 4.0286 1.8086 -5.8129 34 1 5.6577 1.6442 -5.1148 35 1 4.8245 0.2170 -5.7758 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:20 Heat of formation + Delta-G solvation = 56.688362 kcal Electronic energy + Delta-G solvation = -17664.139456 eV Core-core repulsion = 14893.261958 eV Total energy + Delta-G solvation = -2770.877499 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.59297 -39.65280 -37.10776 -35.12594 -34.02821 -32.35301 -30.97651 -29.96021 -28.56543 -25.89897 -24.62069 -23.87227 -22.54490 -20.97628 -19.19441 -19.00802 -18.11897 -16.95986 -16.49775 -16.04009 -15.76207 -15.15804 -14.91782 -14.50151 -14.44335 -14.12511 -13.85090 -13.39137 -13.33273 -13.19507 -12.87152 -12.72362 -12.63842 -12.41938 -12.26974 -12.10722 -12.03476 -11.86932 -11.50395 -11.05552 -10.92832 -10.62092 -9.15928 -8.16324 -6.17255 0.09346 1.18774 1.42527 1.43137 1.52115 1.76546 2.42660 2.52321 3.01971 3.15942 3.23365 3.82211 3.91801 4.14853 4.29407 4.49395 4.52187 4.59186 4.61464 4.66445 4.74897 4.77650 4.83483 4.92849 5.06272 5.09650 5.11870 5.14541 5.31928 5.59855 5.70081 5.97984 6.26887 6.62749 6.90683 7.13759 7.42969 8.98841 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.038006 B = 0.006390 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.539997 B = 4381.124147 C = 4612.182740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.060 3.940 3 N -0.541 5.541 4 C 0.172 3.828 5 C -0.509 4.509 6 H 0.058 0.942 7 C 0.008 3.992 8 N -0.951 5.951 9 Si 0.936 3.064 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.241 1.241 13 C 0.166 3.834 14 H 0.128 0.872 15 C -0.177 4.177 16 C 0.215 3.785 17 N -0.503 5.503 18 C 0.164 3.836 19 C -0.060 4.060 20 N -0.415 5.415 21 O 0.065 5.935 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.033 0.967 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.010 0.990 28 H 0.034 0.966 29 H 0.263 0.737 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.584 -6.055 -8.622 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.067 4.067 3 N -0.266 5.266 4 C 0.046 3.954 5 C -0.547 4.547 6 H 0.076 0.924 7 C -0.188 4.188 8 N -0.592 5.592 9 Si 0.760 3.240 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.164 1.164 13 C 0.055 3.945 14 H 0.145 0.855 15 C -0.236 4.236 16 C -0.006 4.006 17 N -0.238 5.238 18 C -0.109 4.109 19 C -0.118 4.118 20 N -0.129 5.129 21 O 0.014 5.986 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.094 0.906 26 H 0.063 0.937 27 H 0.028 0.972 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.195 -6.017 -9.596 18.160 hybrid contribution 0.069 0.062 1.447 1.450 sum 14.264 -5.956 -8.149 17.474 Atomic orbital electron populations 1.21876 0.95434 0.99746 1.02378 1.22148 0.96283 0.87957 1.00340 1.62073 1.13979 1.18702 1.31831 1.20059 0.96183 0.94246 0.84889 1.21496 0.93291 1.38853 1.01089 0.92370 1.25747 0.96651 0.95486 1.00966 1.70041 1.16427 1.45535 1.27221 0.85886 0.80020 0.79762 0.78334 1.19568 1.21705 1.16395 1.20441 0.90795 1.01974 0.81283 0.85450 1.22466 1.00928 0.99756 1.00487 1.28959 0.88529 0.84207 0.98889 1.71887 1.24428 1.28115 0.99349 1.26721 0.95917 0.88787 0.99439 1.20360 1.01791 1.04817 0.84792 1.74586 1.18575 1.24475 0.95304 1.85313 1.54547 1.42223 1.16561 0.92171 0.92328 0.94782 0.90584 0.93655 0.97246 0.94781 0.92795 0.91189 0.89733 0.89858 0.88164 0.87557 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 8.48 71.98 0.61 -4.85 16 2 C 0.06 2.14 4.36 86.30 0.38 2.52 16 3 N -0.54 -20.64 4.42 -879.92 -3.89 -24.53 16 4 C 0.17 7.41 3.19 85.56 0.27 7.69 16 5 C -0.51 -27.34 7.65 25.60 0.20 -27.15 16 6 H 0.06 3.49 5.77 -2.91 -0.02 3.47 16 7 C 0.01 0.45 5.47 84.66 0.46 0.92 16 8 N -0.95 -57.78 13.96 21.45 0.30 -57.49 16 9 Si 0.94 41.47 27.50 68.60 1.89 43.35 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.24 -9.53 6.49 99.48 0.65 -8.88 16 13 C 0.17 5.08 2.85 44.17 0.13 5.20 16 14 H 0.13 3.76 7.84 -2.38 -0.02 3.74 16 15 C -0.18 -4.29 8.50 71.98 0.61 -3.68 16 16 C 0.21 6.83 7.15 88.38 0.63 7.46 16 17 N -0.50 -15.64 11.55 -303.18 -3.50 -19.14 16 18 C 0.16 4.61 8.22 138.46 1.14 5.74 16 19 C -0.06 -1.01 10.51 71.24 0.75 -0.26 16 20 N -0.42 -13.21 12.16 -60.30 -0.73 -13.95 16 21 O 0.06 2.14 8.57 74.84 0.64 2.79 16 22 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.06 2.73 5.81 -2.39 -0.01 2.72 16 24 H 0.03 1.47 7.73 -2.38 -0.02 1.45 16 25 H 0.08 2.50 4.92 -2.39 -0.01 2.48 16 26 H 0.05 1.50 6.97 -2.39 -0.02 1.49 16 27 H 0.01 0.41 6.09 -2.39 -0.01 0.39 16 28 H 0.03 1.42 7.29 -2.39 -0.02 1.40 16 29 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.07 1.66 6.72 -2.39 -0.02 1.64 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 2.01 7.12 -2.38 -0.02 1.99 16 33 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -65.44 280.52 0.91 -64.53 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.03 Total: 10.84 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.17 Total: -6.41 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -7.83 Total: -115.10 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.64 Total: 2.79 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.89 Total: 43.35 kcal Total: -65.44 0.91 -64.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.218 kcal (2) G-P(sol) polarization free energy of solvation -65.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds