Wall clock time and date at job start Sun Mar 29 2020 22:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.47366 * 2 1 4 4 C 1.46903 * 111.00249 * 195.34840 * 3 2 1 5 5 C 1.50698 * 109.47106 * 66.04717 * 4 3 2 6 6 H 1.08006 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99970 * 180.02562 * 5 4 3 8 8 N 1.31502 * 119.99900 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99818 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46881 * 60.00243 * 9 7 5 11 11 H 1.48496 * 109.46786 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47488 * 300.00193 * 9 7 5 13 13 C 1.46899 * 110.99910 * 71.39311 * 3 2 1 14 14 H 1.09000 * 109.47269 * 307.64131 * 13 3 2 15 15 C 1.53005 * 109.47283 * 187.64174 * 13 3 2 16 16 C 1.50700 * 109.47204 * 67.64339 * 13 3 2 17 17 N 1.31130 * 126.55013 * 234.27335 * 16 13 3 18 18 C 1.34500 * 105.61248 * 179.97438 * 17 16 13 19 19 C 1.50698 * 126.28624 * 180.02562 * 18 17 16 20 20 N 1.29946 * 107.42542 * 359.97438 * 18 17 16 21 21 O 1.21300 * 110.25032 * 359.71017 * 20 18 17 22 22 H 1.08995 * 109.47279 * 60.70364 * 1 2 3 23 23 H 1.08998 * 109.47180 * 180.70831 * 1 2 3 24 24 H 1.09008 * 109.46633 * 300.69931 * 1 2 3 25 25 H 1.09000 * 109.47280 * 239.99833 * 2 1 3 26 26 H 1.08999 * 109.47261 * 119.99972 * 2 1 3 27 27 H 1.09000 * 109.46993 * 306.04609 * 4 3 2 28 28 H 1.08999 * 109.46618 * 186.04677 * 4 3 2 29 29 H 0.97009 * 120.00377 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46933 * 300.00163 * 15 13 3 31 31 H 1.09001 * 109.46613 * 59.99984 * 15 13 3 32 32 H 1.09000 * 109.46831 * 179.97438 * 15 13 3 33 33 H 1.09004 * 109.47459 * 89.99327 * 19 18 17 34 34 H 1.09001 * 109.47040 * 209.99975 * 19 18 17 35 35 H 1.09002 * 109.47243 * 329.99267 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4421 1.4404 -0.3630 5 6 3.6129 0.9998 -1.7940 6 1 2.7510 0.7074 -2.3755 7 6 4.8695 0.9691 -2.3605 8 7 5.9189 1.3247 -1.6523 9 14 5.0813 0.4222 -4.1341 10 1 4.3077 1.3234 -5.0257 11 1 6.5191 0.4784 -4.5010 12 1 4.5852 -0.9692 -4.2857 13 6 1.7827 2.0271 1.2997 14 1 0.7339 1.9146 1.5747 15 6 2.1280 3.5146 1.2043 16 6 2.6492 1.3765 2.3470 17 7 2.2459 0.8553 3.4807 18 6 3.3571 0.3964 4.0838 19 6 3.4254 -0.2939 5.4216 20 7 4.3607 0.6567 3.3005 21 8 3.9747 1.2141 2.2946 22 1 -0.3633 0.5028 -0.8962 23 1 -0.3633 -1.0276 0.0127 24 1 -0.3633 0.5247 0.8837 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.0101 0.7789 0.2911 28 1 3.8059 2.4619 -0.2514 29 1 6.8031 1.3027 -2.0507 30 1 3.1768 3.6272 0.9293 31 1 1.5012 3.9852 0.4468 32 1 1.9517 3.9912 2.1686 33 1 3.3175 -1.3695 5.2815 34 1 4.3866 -0.0831 5.8905 35 1 2.6216 0.0717 6.0606 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:22 Heat of formation + Delta-G solvation = 68.476495 kcal Electronic energy + Delta-G solvation = -17898.915041 eV Core-core repulsion = 15128.548714 eV Total energy + Delta-G solvation = -2770.366327 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.11076 -37.90644 -35.62475 -33.11716 -32.47234 -31.09403 -29.28491 -28.81157 -26.31318 -24.04829 -23.16333 -22.29575 -21.48052 -19.37588 -17.70634 -16.72447 -16.46987 -15.43419 -14.84003 -14.50431 -14.17928 -13.77849 -13.46882 -13.41545 -12.77737 -12.42431 -12.17840 -12.04889 -11.87989 -11.73849 -11.30289 -11.23020 -11.00057 -10.86242 -10.75392 -10.65480 -10.49941 -10.17216 -9.77422 -9.47170 -9.26303 -8.45957 -7.63871 -6.03346 -4.05926 1.61136 2.57906 3.31373 3.33558 3.37539 3.39672 3.96824 4.37035 4.41289 4.70008 5.14721 5.32239 5.40643 5.42811 5.50019 5.57666 5.68028 5.75578 5.81514 5.91915 6.07696 6.13121 6.24188 6.28687 6.37207 6.56070 6.59571 6.68652 7.14373 7.29529 7.69633 7.92916 8.06349 8.41134 8.62317 9.00084 9.57550 11.06829 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.007924 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.160227 B = 3532.638438 C = 3983.176628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 N -0.511 5.511 4 C 0.179 3.821 5 C -0.513 4.513 6 H 0.064 0.936 7 C 0.059 3.941 8 N -0.891 5.891 9 Si 0.897 3.103 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.166 3.834 14 H 0.115 0.885 15 C -0.145 4.145 16 C 0.167 3.833 17 N -0.498 5.498 18 C 0.149 3.851 19 C -0.056 4.056 20 N -0.392 5.392 21 O 0.103 5.897 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.093 0.907 26 H 0.016 0.984 27 H 0.007 0.993 28 H 0.043 0.957 29 H 0.263 0.737 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 -0.110 8.874 11.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 N -0.235 5.235 4 C 0.055 3.945 5 C -0.552 4.552 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.053 3.947 14 H 0.133 0.867 15 C -0.203 4.203 16 C -0.055 4.055 17 N -0.233 5.233 18 C -0.124 4.124 19 C -0.114 4.114 20 N -0.101 5.101 21 O 0.045 5.955 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.111 0.889 26 H 0.035 0.965 27 H 0.024 0.976 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.429 -0.171 9.005 11.675 hybrid contribution 0.725 -0.786 -0.416 1.147 sum -6.703 -0.957 8.589 10.937 Atomic orbital electron populations 1.21808 0.95963 1.00664 1.01823 1.22072 0.94650 0.89686 1.01297 1.62589 1.23558 1.16669 1.20649 1.20098 0.79700 0.98168 0.96556 1.21032 0.92910 1.44861 0.96394 0.91763 1.24968 0.95863 0.95490 0.98044 1.69957 0.98744 1.47699 1.36578 0.86576 0.76930 0.79156 0.84838 1.20093 1.21357 1.20344 1.20985 0.95652 0.94765 0.83255 0.86741 1.21914 1.04301 0.92179 1.01909 1.30668 0.83532 0.95871 0.95429 1.71843 1.28693 1.16440 1.06324 1.25825 0.84472 1.01607 1.00526 1.20023 1.03932 0.99526 0.87940 1.74624 1.24238 1.14760 0.96453 1.85601 1.24091 1.54273 1.31537 0.91848 0.93135 0.93389 0.88901 0.96550 0.97562 0.93950 0.92778 0.90723 0.89883 0.92535 0.89836 0.89920 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.97 37.16 0.37 -1.81 16 2 C 0.05 0.97 5.42 -3.83 -0.02 0.95 16 3 N -0.51 -10.39 4.42 -229.47 -1.02 -11.40 16 4 C 0.18 4.46 3.66 -4.98 -0.02 4.44 16 5 C -0.51 -13.94 8.29 -34.44 -0.29 -14.23 16 6 H 0.06 1.71 7.25 -52.48 -0.38 1.33 16 7 C 0.06 1.63 5.46 -17.83 -0.10 1.54 16 8 N -0.89 -26.18 13.28 55.43 0.74 -25.44 16 9 Si 0.90 21.33 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.17 2.89 2.79 -68.86 -0.19 2.70 16 14 H 0.11 1.76 6.41 -51.93 -0.33 1.42 16 15 C -0.14 -2.25 9.07 37.16 0.34 -1.92 16 16 C 0.17 3.22 5.66 -13.06 -0.07 3.15 16 17 N -0.50 -9.14 11.55 -9.87 -0.11 -9.26 16 18 C 0.15 2.63 8.22 -156.37 -1.28 1.35 16 19 C -0.06 -0.67 10.51 36.00 0.38 -0.30 16 20 N -0.39 -8.12 12.16 30.90 0.38 -7.74 16 21 O 0.10 2.25 8.64 18.10 0.16 2.41 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.67 6.58 -51.92 -0.34 0.33 16 25 H 0.09 1.94 6.59 -51.93 -0.34 1.60 16 26 H 0.02 0.33 7.05 -51.93 -0.37 -0.04 16 27 H 0.01 0.19 5.87 -51.93 -0.30 -0.12 16 28 H 0.04 1.11 5.97 -51.93 -0.31 0.80 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.07 1.32 6.29 -51.93 -0.33 1.00 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 287.28 15.07 4.33 4.33 Total: -1.00 -30.68 287.28 -6.24 -36.92 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.80 Total: -1.97 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -0.89 Total: -4.14 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.02 Total: -53.84 kcal Atomic # 8 Polarization: 2.25 SS G_CDS: 0.16 Total: 2.41 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.68 -6.24 -36.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.392 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds