Wall clock time and date at job start Sun Mar 29 2020 22:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.47366 * 2 1 4 4 C 1.46903 * 111.00249 * 195.34840 * 3 2 1 5 5 C 1.50698 * 109.47106 * 66.04717 * 4 3 2 6 6 H 1.08006 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99970 * 180.02562 * 5 4 3 8 8 N 1.31502 * 119.99900 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99818 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46881 * 60.00243 * 9 7 5 11 11 H 1.48496 * 109.46786 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47488 * 300.00193 * 9 7 5 13 13 C 1.46899 * 110.99910 * 71.39311 * 3 2 1 14 14 H 1.09000 * 109.47269 * 307.64131 * 13 3 2 15 15 C 1.53005 * 109.47283 * 187.64174 * 13 3 2 16 16 C 1.50700 * 109.47204 * 67.64339 * 13 3 2 17 17 N 1.31130 * 126.55013 * 234.27335 * 16 13 3 18 18 C 1.34500 * 105.61248 * 179.97438 * 17 16 13 19 19 C 1.50698 * 126.28624 * 180.02562 * 18 17 16 20 20 N 1.29946 * 107.42542 * 359.97438 * 18 17 16 21 21 O 1.21300 * 110.25032 * 359.71017 * 20 18 17 22 22 H 1.08995 * 109.47279 * 60.70364 * 1 2 3 23 23 H 1.08998 * 109.47180 * 180.70831 * 1 2 3 24 24 H 1.09008 * 109.46633 * 300.69931 * 1 2 3 25 25 H 1.09000 * 109.47280 * 239.99833 * 2 1 3 26 26 H 1.08999 * 109.47261 * 119.99972 * 2 1 3 27 27 H 1.09000 * 109.46993 * 306.04609 * 4 3 2 28 28 H 1.08999 * 109.46618 * 186.04677 * 4 3 2 29 29 H 0.97009 * 120.00377 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46933 * 300.00163 * 15 13 3 31 31 H 1.09001 * 109.46613 * 59.99984 * 15 13 3 32 32 H 1.09000 * 109.46831 * 179.97438 * 15 13 3 33 33 H 1.09004 * 109.47459 * 89.99327 * 19 18 17 34 34 H 1.09001 * 109.47040 * 209.99975 * 19 18 17 35 35 H 1.09002 * 109.47243 * 329.99267 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4421 1.4404 -0.3630 5 6 3.6129 0.9998 -1.7940 6 1 2.7510 0.7074 -2.3755 7 6 4.8695 0.9691 -2.3605 8 7 5.9189 1.3247 -1.6523 9 14 5.0813 0.4222 -4.1341 10 1 4.3077 1.3234 -5.0257 11 1 6.5191 0.4784 -4.5010 12 1 4.5852 -0.9692 -4.2857 13 6 1.7827 2.0271 1.2997 14 1 0.7339 1.9146 1.5747 15 6 2.1280 3.5146 1.2043 16 6 2.6492 1.3765 2.3470 17 7 2.2459 0.8553 3.4807 18 6 3.3571 0.3964 4.0838 19 6 3.4254 -0.2939 5.4216 20 7 4.3607 0.6567 3.3005 21 8 3.9747 1.2141 2.2946 22 1 -0.3633 0.5028 -0.8962 23 1 -0.3633 -1.0276 0.0127 24 1 -0.3633 0.5247 0.8837 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.0101 0.7789 0.2911 28 1 3.8059 2.4619 -0.2514 29 1 6.8031 1.3027 -2.0507 30 1 3.1768 3.6272 0.9293 31 1 1.5012 3.9852 0.4468 32 1 1.9517 3.9912 2.1686 33 1 3.3175 -1.3695 5.2815 34 1 4.3866 -0.0831 5.8905 35 1 2.6216 0.0717 6.0606 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:22 Heat of formation + Delta-G solvation = 45.787221 kcal Electronic energy + Delta-G solvation = -17899.898922 eV Core-core repulsion = 15128.548714 eV Total energy + Delta-G solvation = -2771.350208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.59147 -39.49199 -37.06174 -34.98050 -34.12995 -32.45353 -30.96830 -30.01565 -28.09260 -25.59587 -24.75338 -23.86768 -23.04601 -20.88264 -19.24865 -18.58274 -18.08718 -17.09586 -16.44369 -16.20747 -15.83994 -15.07732 -14.95696 -14.52272 -14.15204 -13.96140 -13.84324 -13.42928 -13.24020 -13.15107 -12.83083 -12.67666 -12.63711 -12.51834 -12.31323 -12.23532 -12.11673 -11.85798 -11.45249 -11.26853 -10.96378 -10.56707 -9.38238 -8.16939 -6.26789 0.10449 1.17223 1.42582 1.45155 1.52915 1.86321 2.41380 2.63352 3.07171 3.13969 3.17247 3.87057 4.01504 4.13665 4.26893 4.42308 4.51727 4.53673 4.60700 4.66174 4.78483 4.85786 4.88450 5.02004 5.07360 5.13222 5.22300 5.25602 5.34324 5.44748 5.64679 6.03068 6.18148 6.46974 6.87898 7.13159 7.41580 8.93412 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.007924 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.160227 B = 3532.638438 C = 3983.176628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.052 3.948 3 N -0.510 5.510 4 C 0.197 3.803 5 C -0.525 4.525 6 H 0.067 0.933 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.270 1.270 13 C 0.164 3.836 14 H 0.146 0.854 15 C -0.140 4.140 16 C 0.166 3.834 17 N -0.497 5.497 18 C 0.159 3.841 19 C -0.056 4.056 20 N -0.427 5.427 21 O 0.060 5.940 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.000 1.000 27 H -0.026 1.026 28 H 0.023 0.977 29 H 0.262 0.738 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.953 -0.450 9.285 13.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.076 4.076 3 N -0.233 5.233 4 C 0.072 3.928 5 C -0.564 4.564 6 H 0.085 0.915 7 C -0.195 4.195 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.196 1.196 13 C 0.052 3.948 14 H 0.163 0.837 15 C -0.198 4.198 16 C -0.057 4.057 17 N -0.233 5.233 18 C -0.114 4.114 19 C -0.114 4.114 20 N -0.142 5.142 21 O 0.010 5.990 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.019 0.981 27 H -0.008 1.008 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.500 -0.491 9.385 13.363 hybrid contribution 1.306 -0.703 -0.424 1.543 sum -8.193 -1.194 8.961 12.201 Atomic orbital electron populations 1.21724 0.92144 1.02345 1.02806 1.22088 0.97614 0.88555 0.99322 1.62517 1.20400 1.17573 1.22837 1.19670 0.82122 0.95974 0.95059 1.21418 0.93093 1.44308 0.97545 0.91486 1.25865 0.95573 0.95562 1.02478 1.70106 0.99175 1.49167 1.38555 0.85499 0.76876 0.79047 0.79578 1.18889 1.21265 1.19557 1.21273 0.96814 0.95210 0.81482 0.83699 1.21905 1.02634 0.91302 1.03923 1.31005 0.83051 0.95549 0.96078 1.71884 1.28802 1.16543 1.06073 1.26862 0.83513 0.99626 1.01445 1.20351 1.05786 1.00008 0.85276 1.74634 1.25745 1.16736 0.97072 1.85558 1.25330 1.55539 1.32586 0.91314 0.91194 0.91822 0.91381 0.98136 1.00837 0.95899 0.92885 0.93743 0.88212 0.89871 0.88077 0.88480 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.97 71.98 0.72 -2.94 16 2 C 0.05 1.98 5.42 86.30 0.47 2.45 16 3 N -0.51 -20.76 4.42 -879.92 -3.89 -24.65 16 4 C 0.20 10.20 3.66 85.56 0.31 10.52 16 5 C -0.53 -29.16 8.29 25.60 0.21 -28.95 16 6 H 0.07 3.59 7.25 -2.91 -0.02 3.57 16 7 C 0.00 0.21 5.46 84.66 0.46 0.67 16 8 N -0.93 -56.45 13.28 21.44 0.28 -56.16 16 9 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.16 5.57 2.79 44.17 0.12 5.69 16 14 H 0.15 4.04 6.41 -2.39 -0.02 4.02 16 15 C -0.14 -4.24 9.07 71.98 0.65 -3.58 16 16 C 0.17 6.38 5.66 88.38 0.50 6.88 16 17 N -0.50 -17.68 11.55 -303.20 -3.50 -21.19 16 18 C 0.16 5.47 8.22 138.46 1.14 6.61 16 19 C -0.06 -1.22 10.51 71.24 0.75 -0.47 16 20 N -0.43 -18.05 12.16 -60.32 -0.73 -18.78 16 21 O 0.06 2.74 8.64 74.82 0.65 3.39 16 22 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.06 1.56 6.58 -2.38 -0.02 1.54 16 25 H 0.07 2.89 6.59 -2.39 -0.02 2.87 16 26 H 0.00 0.01 7.05 -2.39 -0.02 0.00 16 27 H -0.03 -1.50 5.87 -2.39 -0.01 -1.52 16 28 H 0.02 1.27 5.97 -2.39 -0.01 1.25 16 29 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 30 H 0.04 1.62 6.29 -2.39 -0.02 1.60 16 31 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -68.52 287.28 1.25 -67.27 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.09 Total: 7.08 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 5.33 Total: -3.13 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -7.84 Total: -120.78 kcal Atomic # 8 Polarization: 2.74 SS G_CDS: 0.65 Total: 3.39 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -68.52 1.25 -67.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.055 kcal (2) G-P(sol) polarization free energy of solvation -68.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds