Wall clock time and date at job start Sun Mar 29 2020 22:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86809 * 119.99748 * 2 1 4 4 H 1.48502 * 109.46839 * 269.99911 * 3 2 1 5 5 H 1.48494 * 109.47111 * 30.00049 * 3 2 1 6 6 H 1.48499 * 109.46841 * 150.00055 * 3 2 1 7 7 C 1.38952 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99536 * 179.97438 * 7 2 1 9 9 N 1.37085 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99996 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00046 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99843 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46976 * 180.02562 * 12 10 9 14 14 C 1.48523 * 111.00299 * 170.00184 * 13 12 10 15 15 C 1.54279 * 104.71733 * 159.27750 * 14 13 12 16 16 H 1.08994 * 112.38289 * 99.15117 * 15 14 13 17 17 C 1.54289 * 108.81480 * 224.27563 * 15 14 13 18 18 N 1.48514 * 104.81552 * 135.67043 * 17 15 14 19 19 C 1.48628 * 104.15355 * 320.41896 * 18 17 15 20 20 C 1.54282 * 104.78697 * 39.57360 * 19 18 17 21 21 H 1.09007 * 112.84003 * 98.90120 * 20 19 18 22 22 C 1.48521 * 111.00316 * 285.40009 * 13 12 10 23 23 H 0.96990 * 120.00184 * 359.97438 * 1 2 3 24 24 H 0.97004 * 120.00322 * 0.02562 * 9 7 2 25 25 H 1.09002 * 109.47188 * 60.00818 * 12 10 9 26 26 H 1.09001 * 109.47287 * 300.00131 * 12 10 9 27 27 H 1.09005 * 110.38307 * 40.46433 * 14 13 12 28 28 H 1.09001 * 110.47912 * 278.13798 * 14 13 12 29 29 H 1.09002 * 110.38840 * 254.53690 * 17 15 14 30 30 H 1.09000 * 110.38832 * 16.80508 * 17 15 14 31 31 H 1.00897 * 111.00519 * 79.87243 * 18 17 15 32 32 H 1.08993 * 110.28757 * 280.77139 * 19 18 17 33 33 H 1.08997 * 110.41781 * 158.43768 * 19 18 17 34 34 H 1.08999 * 110.38699 * 319.53231 * 22 13 12 35 35 H 1.08998 * 110.38808 * 81.79604 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1987 -5.9794 -0.0027 14 6 1.5068 -7.2715 0.2375 15 6 2.4756 -8.3419 -0.3063 16 1 3.0635 -8.8093 0.4836 17 6 1.6705 -9.3711 -1.1267 18 7 2.4782 -9.5949 -2.3527 19 6 2.9882 -8.2437 -2.7037 20 6 3.3484 -7.5952 -1.3509 21 1 4.4129 -7.6539 -1.1236 22 6 2.8245 -6.1441 -1.3395 23 1 -0.4850 0.8399 0.0004 24 1 0.3535 -2.3907 -0.0005 25 1 0.6171 -4.9201 -0.8920 26 1 0.6177 -4.9212 0.8880 27 1 0.5622 -7.3030 -0.3057 28 1 1.3360 -7.4202 1.3037 29 1 1.5623 -10.3009 -0.5682 30 1 0.6913 -8.9681 -1.3853 31 1 3.2394 -10.2323 -2.1730 32 1 2.2131 -7.6662 -3.2072 33 1 3.8736 -8.3234 -3.3343 34 1 2.0832 -6.0019 -2.1259 35 1 3.6476 -5.4403 -1.4628 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082618976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:35 Heat of formation + Delta-G solvation = -21.152133 kcal Electronic energy + Delta-G solvation = -17207.041774 eV Core-core repulsion = 14432.788858 eV Total energy + Delta-G solvation = -2774.252916 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.15083 -38.06273 -35.65511 -33.82397 -31.27786 -30.57815 -30.52650 -26.60973 -25.76630 -24.27176 -22.06857 -21.17698 -19.50922 -19.00929 -17.81392 -17.09530 -15.93914 -15.30200 -15.10010 -14.77433 -14.37822 -14.11575 -13.84963 -13.10118 -12.88662 -12.77638 -12.23842 -12.06540 -11.88253 -11.50928 -11.25220 -11.10718 -11.01669 -10.86802 -10.75665 -10.57712 -10.37594 -10.19600 -9.47251 -8.88300 -8.48667 -7.97670 -7.91471 -6.39370 -3.80057 3.19222 3.27565 3.33708 3.93567 4.01245 4.11092 4.30817 4.42709 4.57405 4.94119 5.07273 5.17082 5.23535 5.24997 5.28174 5.36680 5.54663 5.68160 5.75971 5.79601 5.83441 5.86930 5.88535 6.09761 6.19261 6.30538 6.40993 6.48013 7.12340 7.13462 7.24915 7.57266 8.08813 8.64928 9.20856 9.57429 10.09813 10.78621 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.058757 B = 0.004703 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.424832 B = 5952.685562 C = 6110.449845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.446 3.554 11 O -0.577 6.577 12 C 0.034 3.966 13 N -0.485 5.485 14 C 0.038 3.962 15 C -0.123 4.123 16 H 0.088 0.912 17 C 0.043 3.957 18 N -0.671 5.671 19 C 0.043 3.957 20 C -0.123 4.123 21 H 0.089 0.911 22 C 0.047 3.953 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.050 0.950 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.335 0.665 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.665 -15.797 -2.416 15.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.231 3.769 11 O -0.461 6.461 12 C -0.098 4.098 13 N -0.209 5.209 14 C -0.091 4.091 15 C -0.144 4.144 16 H 0.107 0.893 17 C -0.087 4.087 18 N -0.296 5.296 19 C -0.087 4.087 20 C -0.144 4.144 21 H 0.107 0.893 22 C -0.081 4.081 23 H 0.081 0.919 24 H 0.225 0.775 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.150 0.850 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.167 -15.558 -2.516 15.803 hybrid contribution -0.250 1.020 0.194 1.068 sum 0.917 -14.538 -2.322 14.751 Atomic orbital electron populations 1.69609 1.05936 1.28099 1.50845 1.25249 0.95619 0.99668 0.97422 0.85865 0.79253 0.80863 0.78353 1.20445 1.20936 1.19419 1.19693 0.93340 0.82237 1.47470 0.87970 1.41864 1.09153 1.04580 1.64776 1.19713 0.88396 0.84467 0.84309 1.90505 1.13686 1.87001 1.54873 1.22058 0.94209 0.91936 1.01595 1.65121 1.26805 1.00958 1.27987 1.23216 0.95190 0.89523 1.01151 1.23253 0.96847 0.96191 0.98117 0.89347 1.23199 0.97731 0.98211 0.89545 1.63373 1.24414 1.09554 1.32240 1.23220 0.99906 0.89624 0.95953 1.23277 1.00228 0.95839 0.95072 0.89286 1.23199 0.99678 0.95587 0.89648 0.91916 0.77538 0.93218 0.89400 0.93803 0.90346 0.90920 0.90159 0.85022 0.90061 0.90759 0.94161 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.42 9.68 -14.94 -0.14 -8.57 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 9 N -0.57 -14.64 5.29 -10.96 -0.06 -14.70 16 10 C 0.45 10.81 7.63 -10.98 -0.08 10.72 16 11 O -0.58 -15.97 14.79 5.55 0.08 -15.89 16 12 C 0.03 0.63 5.32 -4.98 -0.03 0.60 16 13 N -0.49 -8.38 4.97 -231.60 -1.15 -9.53 16 14 C 0.04 0.49 5.99 -2.26 -0.01 0.48 16 15 C -0.12 -1.40 4.12 -88.08 -0.36 -1.76 16 16 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 17 C 0.04 0.42 7.00 -2.26 -0.02 0.41 16 18 N -0.67 -6.76 7.63 -109.75 -0.84 -7.60 16 19 C 0.04 0.46 7.01 -2.20 -0.02 0.45 16 20 C -0.12 -1.54 4.12 -88.08 -0.36 -1.90 16 21 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 22 C 0.05 0.76 5.47 -2.26 -0.01 0.74 16 23 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 25 H 0.05 0.84 7.77 -51.93 -0.40 0.44 16 26 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 27 H 0.04 0.54 7.01 -51.93 -0.36 0.18 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.83 7.15 -51.93 -0.37 0.46 16 31 H 0.33 2.83 8.92 -39.29 -0.35 2.48 16 32 H 0.08 0.95 7.15 -51.93 -0.37 0.58 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.63 6.76 -51.93 -0.35 0.28 16 35 H 0.09 1.79 7.22 -51.93 -0.38 1.41 16 LS Contribution 282.59 15.07 4.26 4.26 Total: -1.00 -31.35 282.59 -8.09 -39.44 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -4.95 Total: 10.24 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.13 Total: 1.67 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -1.32 Total: -55.96 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.08 Total: -15.89 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.35 -8.09 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082618976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.291 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds