Wall clock time and date at job start Sun Mar 29 2020 22:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86809 * 119.99748 * 2 1 4 4 H 1.48502 * 109.46839 * 269.99911 * 3 2 1 5 5 H 1.48494 * 109.47111 * 30.00049 * 3 2 1 6 6 H 1.48499 * 109.46841 * 150.00055 * 3 2 1 7 7 C 1.38952 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99536 * 179.97438 * 7 2 1 9 9 N 1.37085 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99996 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00046 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99843 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46976 * 180.02562 * 12 10 9 14 14 C 1.48523 * 111.00299 * 170.00184 * 13 12 10 15 15 C 1.54279 * 104.71733 * 159.27750 * 14 13 12 16 16 H 1.08994 * 112.38289 * 99.15117 * 15 14 13 17 17 C 1.54289 * 108.81480 * 224.27563 * 15 14 13 18 18 N 1.48514 * 104.81552 * 135.67043 * 17 15 14 19 19 C 1.48628 * 104.15355 * 320.41896 * 18 17 15 20 20 C 1.54282 * 104.78697 * 39.57360 * 19 18 17 21 21 H 1.09007 * 112.84003 * 98.90120 * 20 19 18 22 22 C 1.48521 * 111.00316 * 285.40009 * 13 12 10 23 23 H 0.96990 * 120.00184 * 359.97438 * 1 2 3 24 24 H 0.97004 * 120.00322 * 0.02562 * 9 7 2 25 25 H 1.09002 * 109.47188 * 60.00818 * 12 10 9 26 26 H 1.09001 * 109.47287 * 300.00131 * 12 10 9 27 27 H 1.09005 * 110.38307 * 40.46433 * 14 13 12 28 28 H 1.09001 * 110.47912 * 278.13798 * 14 13 12 29 29 H 1.09002 * 110.38840 * 254.53690 * 17 15 14 30 30 H 1.09000 * 110.38832 * 16.80508 * 17 15 14 31 31 H 1.00897 * 111.00519 * 79.87243 * 18 17 15 32 32 H 1.08993 * 110.28757 * 280.77139 * 19 18 17 33 33 H 1.08997 * 110.41781 * 158.43768 * 19 18 17 34 34 H 1.08999 * 110.38699 * 319.53231 * 22 13 12 35 35 H 1.08998 * 110.38808 * 81.79604 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1987 -5.9794 -0.0027 14 6 1.5068 -7.2715 0.2375 15 6 2.4756 -8.3419 -0.3063 16 1 3.0635 -8.8093 0.4836 17 6 1.6705 -9.3711 -1.1267 18 7 2.4782 -9.5949 -2.3527 19 6 2.9882 -8.2437 -2.7037 20 6 3.3484 -7.5952 -1.3509 21 1 4.4129 -7.6539 -1.1236 22 6 2.8245 -6.1441 -1.3395 23 1 -0.4850 0.8399 0.0004 24 1 0.3535 -2.3907 -0.0005 25 1 0.6171 -4.9201 -0.8920 26 1 0.6177 -4.9212 0.8880 27 1 0.5622 -7.3030 -0.3057 28 1 1.3360 -7.4202 1.3037 29 1 1.5623 -10.3009 -0.5682 30 1 0.6913 -8.9681 -1.3853 31 1 3.2394 -10.2323 -2.1730 32 1 2.2131 -7.6662 -3.2072 33 1 3.8736 -8.3234 -3.3343 34 1 2.0832 -6.0019 -2.1259 35 1 3.6476 -5.4403 -1.4628 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082618976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:34 Heat of formation + Delta-G solvation = -47.099565 kcal Electronic energy + Delta-G solvation = -17208.166939 eV Core-core repulsion = 14432.788858 eV Total energy + Delta-G solvation = -2775.378081 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.25484 -39.87971 -36.88907 -35.85570 -33.31018 -31.78102 -31.54395 -28.19352 -26.76497 -26.09065 -22.94951 -22.47264 -20.99980 -20.37553 -19.85266 -18.05838 -17.64918 -16.72288 -16.38884 -16.29704 -15.83398 -15.56242 -15.49231 -14.49477 -14.20961 -14.15610 -13.58041 -13.41480 -13.17507 -12.97585 -12.91674 -12.46811 -12.43203 -12.13907 -12.06406 -11.86358 -11.76899 -11.59836 -11.49624 -10.36129 -10.02564 -9.71792 -9.34163 -8.47713 -5.96746 1.37011 1.40539 1.53638 2.03651 2.27731 2.81274 3.18192 3.22061 3.35712 3.56194 3.63187 4.06889 4.12302 4.23826 4.30196 4.34261 4.40705 4.42953 4.48486 4.61467 4.72962 4.83189 4.86731 5.02002 5.08034 5.13442 5.31203 5.39301 5.64688 5.83616 5.90272 6.07360 6.44588 6.59489 7.11682 7.54635 8.10939 8.69915 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.058757 B = 0.004703 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.424832 B = 5952.685562 C = 6110.449845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.334 4.334 8 H 0.077 0.923 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.617 6.617 12 C 0.047 3.953 13 N -0.512 5.512 14 C 0.038 3.962 15 C -0.117 4.117 16 H 0.098 0.902 17 C 0.050 3.950 18 N -0.672 5.672 19 C 0.049 3.951 20 C -0.119 4.119 21 H 0.086 0.914 22 C 0.048 3.952 23 H 0.278 0.722 24 H 0.396 0.604 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.346 0.654 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.030 -17.037 -2.416 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.095 0.905 9 N -0.213 5.213 10 C 0.229 3.771 11 O -0.503 6.503 12 C -0.085 4.085 13 N -0.236 5.236 14 C -0.089 4.089 15 C -0.137 4.137 16 H 0.116 0.884 17 C -0.080 4.080 18 N -0.298 5.298 19 C -0.081 4.081 20 C -0.140 4.140 21 H 0.105 0.895 22 C -0.081 4.081 23 H 0.087 0.913 24 H 0.230 0.770 25 H 0.086 0.914 26 H 0.127 0.873 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.163 0.837 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.446 -16.827 -2.517 17.020 hybrid contribution -0.024 1.372 0.200 1.387 sum 0.422 -15.454 -2.318 15.633 Atomic orbital electron populations 1.69668 1.06850 1.29328 1.50375 1.26040 0.96543 1.02381 0.96220 0.84925 0.77873 0.76830 0.78686 1.19567 1.19400 1.19833 1.19652 0.92645 0.84030 1.50022 0.90461 1.41935 1.09279 1.04700 1.65358 1.20762 0.88281 0.85908 0.82188 1.90474 1.15786 1.87888 1.56164 1.21907 0.93892 0.89303 1.03385 1.65056 1.27564 1.02344 1.28658 1.23326 0.95828 0.87650 1.02126 1.23265 0.96447 0.95941 0.98074 0.88370 1.23180 0.97037 0.98639 0.89187 1.63348 1.24939 1.09029 1.32491 1.23117 1.00108 0.89857 0.95009 1.23243 1.00229 0.93630 0.96853 0.89526 1.23112 0.98445 0.97059 0.89449 0.91261 0.77045 0.91400 0.87300 0.92511 0.89380 0.88644 0.90541 0.83729 0.91037 0.89567 0.94005 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 3 Si 0.99 43.51 29.55 68.60 2.03 45.54 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.33 -19.40 9.68 84.04 0.81 -18.59 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.58 -30.42 5.29 -306.99 -1.62 -32.05 16 10 C 0.44 21.90 7.63 87.66 0.67 22.57 16 11 O -0.62 -35.54 14.79 -3.06 -0.05 -35.59 16 12 C 0.05 1.71 5.32 85.56 0.46 2.16 16 13 N -0.51 -17.40 4.97 -886.65 -4.41 -21.81 16 14 C 0.04 0.92 5.99 86.42 0.52 1.44 16 15 C -0.12 -2.36 4.12 -9.15 -0.04 -2.39 16 16 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 17 C 0.05 0.81 7.00 86.43 0.61 1.41 16 18 N -0.67 -11.67 7.63 -501.15 -3.83 -15.49 16 19 C 0.05 0.98 7.01 86.40 0.61 1.59 16 20 C -0.12 -2.83 4.12 -9.15 -0.04 -2.87 16 21 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 22 C 0.05 1.55 5.47 86.42 0.47 2.02 16 23 H 0.28 14.19 8.31 -92.72 -0.77 13.41 16 24 H 0.40 19.83 7.90 -92.71 -0.73 19.09 16 25 H 0.07 2.23 7.77 -2.39 -0.02 2.21 16 26 H 0.11 3.50 8.08 -2.39 -0.02 3.48 16 27 H 0.06 1.23 7.01 -2.38 -0.02 1.22 16 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.34 7.15 -2.39 -0.02 1.33 16 31 H 0.35 4.79 8.92 -89.70 -0.80 3.99 16 32 H 0.07 1.59 7.15 -2.39 -0.02 1.57 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.04 1.32 6.76 -2.39 -0.02 1.30 16 35 H 0.05 2.13 7.22 -2.39 -0.02 2.11 16 Total: -1.00 -68.45 282.59 -3.49 -71.94 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: -0.42 Total: 30.42 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 4.53 Total: 7.14 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -9.58 Total: -119.45 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.05 Total: -35.59 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.45 -3.49 -71.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082618976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.838 kcal (2) G-P(sol) polarization free energy of solvation -68.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds