Wall clock time and date at job start Sun Mar 29 2020 22:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86793 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46949 * 239.99706 * 3 2 1 5 5 H 1.48496 * 109.47431 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47561 * 119.99908 * 3 2 1 7 7 C 1.38949 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99856 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99518 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00709 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99614 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.49704 * 110.99802 * 289.68417 * 13 12 10 15 15 C 1.50134 * 104.73230 * 245.79003 * 14 13 12 16 16 H 1.08999 * 110.04974 * 80.32589 * 15 14 13 17 17 C 1.50738 * 126.53294 * 216.18350 * 15 14 13 18 18 N 1.50181 * 102.14296 * 154.90892 * 17 15 14 19 19 C 1.49698 * 107.65003 * 334.70688 * 18 17 15 20 20 C 1.50144 * 104.73774 * 352.54751 * 19 18 17 21 21 H 1.08998 * 109.78397 * 279.74600 * 20 19 18 22 22 C 1.50185 * 110.99824 * 169.99928 * 13 12 10 23 23 H 0.97002 * 120.00022 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00213 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.47103 * 60.00237 * 12 10 9 26 26 H 1.09000 * 109.47247 * 300.00115 * 12 10 9 27 27 H 1.08994 * 110.39053 * 4.60041 * 14 13 12 28 28 H 1.08996 * 110.38529 * 126.98142 * 14 13 12 29 29 H 1.09000 * 110.86733 * 273.07292 * 17 15 14 30 30 H 1.09007 * 110.87046 * 36.74638 * 17 15 14 31 31 H 1.00900 * 111.00034 * 213.04024 * 18 17 15 32 32 H 1.09001 * 110.38233 * 233.73428 * 19 18 17 33 33 H 1.09000 * 110.38390 * 111.36431 * 19 18 17 34 34 H 1.09000 * 110.86858 * 265.12226 * 22 13 12 35 35 H 1.08994 * 110.86821 * 28.79556 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0011 12 6 1.2438 -4.8629 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 2.9049 -6.0819 -1.3132 15 6 2.4439 -7.3876 -1.8934 16 1 1.4610 -7.2678 -2.3492 17 6 3.2700 -8.3480 -2.7104 18 7 2.5696 -9.6539 -2.4664 19 6 1.8639 -9.5514 -1.1501 20 6 2.3258 -8.2460 -0.5697 21 1 3.3093 -8.3710 -0.1169 22 6 1.4986 -7.2857 0.2468 23 1 -0.4850 0.8401 -0.0004 24 1 0.3534 -2.3907 0.0016 25 1 0.6168 -4.9208 -0.8876 26 1 0.6175 -4.9204 0.8924 27 1 2.6183 -5.2554 -1.9634 28 1 3.9846 -6.0926 -1.1647 29 1 3.2408 -8.0833 -3.7674 30 1 4.2968 -8.3841 -2.3463 31 1 3.2249 -10.4212 -2.4666 32 1 2.1504 -10.3783 -0.5004 33 1 0.7841 -9.5402 -1.2982 34 1 1.5274 -7.5501 1.3038 35 1 0.4721 -7.2503 -0.1179 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082618978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:38 Heat of formation + Delta-G solvation = -0.157503 kcal Electronic energy + Delta-G solvation = -17189.449876 eV Core-core repulsion = 14416.107355 eV Total energy + Delta-G solvation = -2773.342520 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.49315 -38.08811 -35.74684 -33.82661 -31.27308 -30.53482 -30.39715 -26.67214 -26.36379 -24.40676 -21.95492 -20.53390 -20.08437 -18.98148 -17.78904 -16.73782 -15.89714 -15.76375 -15.00286 -14.63190 -14.36888 -14.17320 -13.74204 -13.20554 -12.89287 -12.86987 -12.45833 -12.08980 -11.89181 -11.57951 -11.46752 -11.35847 -11.02496 -10.86901 -10.68220 -10.42344 -10.19756 -10.15588 -9.46080 -8.74908 -8.43203 -7.94488 -7.90877 -6.38743 -3.79491 3.21996 3.27321 3.31751 3.84226 3.90787 3.94289 4.02167 4.25191 4.62023 4.95467 5.08916 5.18837 5.25866 5.33153 5.34696 5.41344 5.58930 5.62995 5.66220 5.79038 5.84912 5.89968 5.94634 6.11435 6.17102 6.32790 6.38690 6.48767 7.06532 7.09718 7.23144 7.57594 8.09109 8.65426 9.21247 9.57958 10.10289 10.79140 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.059830 B = 0.004664 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.883141 B = 6001.881333 C = 6170.566990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.038 3.962 13 N -0.500 5.500 14 C 0.076 3.924 15 C -0.142 4.142 16 H 0.078 0.922 17 C 0.064 3.936 18 N -0.683 5.683 19 C 0.064 3.936 20 C -0.143 4.143 21 H 0.082 0.918 22 C 0.060 3.940 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.336 0.664 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 -15.889 -2.597 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.230 3.770 11 O -0.460 6.460 12 C -0.094 4.094 13 N -0.224 5.224 14 C -0.052 4.052 15 C -0.162 4.162 16 H 0.097 0.903 17 C -0.065 4.065 18 N -0.312 5.312 19 C -0.065 4.065 20 C -0.163 4.163 21 H 0.100 0.900 22 C -0.068 4.068 23 H 0.081 0.919 24 H 0.225 0.775 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.151 0.849 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.100 -15.467 -2.602 15.722 hybrid contribution -0.149 0.721 0.039 0.738 sum 0.951 -14.745 -2.562 14.996 Atomic orbital electron populations 1.69608 1.05927 1.28196 1.50768 1.25246 0.95621 0.99662 0.97409 0.85923 0.78753 0.80519 0.79051 1.19949 1.20998 1.19908 1.19645 0.93313 0.82253 1.47590 0.88020 1.41858 1.09150 1.04567 1.64780 1.19734 0.88425 0.84497 0.84367 1.90517 1.13653 1.87010 1.54841 1.22064 0.94174 0.91687 1.01480 1.64951 1.25763 1.00999 1.30698 1.21896 1.00218 0.94159 0.88923 1.22690 1.01379 0.96133 0.95979 0.90323 1.22059 0.95567 0.88639 1.00257 1.63507 1.31584 1.04989 1.31096 1.21818 0.99923 0.95552 0.89184 1.22596 1.01642 0.95192 0.96888 0.89971 1.22278 0.95638 0.88782 1.00070 0.91869 0.77532 0.93344 0.89349 0.91641 0.90134 0.89914 0.93076 0.84932 0.92161 0.90502 0.89908 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 9 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16 10 C 0.44 10.72 7.34 -10.99 -0.08 10.64 16 11 O -0.58 -15.89 15.14 5.55 0.08 -15.81 16 12 C 0.04 0.70 5.10 -4.97 -0.03 0.67 16 13 N -0.50 -8.59 4.97 -233.82 -1.16 -9.75 16 14 C 0.08 1.24 5.57 -3.68 -0.02 1.22 16 15 C -0.14 -1.83 2.90 -90.31 -0.26 -2.09 16 16 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 17 C 0.06 0.70 7.44 -3.12 -0.02 0.67 16 18 N -0.68 -6.95 7.57 -111.80 -0.85 -7.80 16 19 C 0.06 0.63 7.44 -3.68 -0.03 0.61 16 20 C -0.14 -1.68 2.91 -90.30 -0.26 -1.94 16 21 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 22 C 0.06 0.79 6.53 -3.10 -0.02 0.77 16 23 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 25 H 0.05 0.82 8.06 -51.93 -0.42 0.40 16 26 H 0.09 1.47 8.09 -51.93 -0.42 1.05 16 27 H 0.07 1.19 7.31 -51.93 -0.38 0.81 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.34 2.76 8.94 -39.29 -0.35 2.41 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.62 7.88 -51.93 -0.41 0.21 16 LS Contribution 286.09 15.07 4.31 4.31 Total: -1.00 -31.16 286.09 -8.13 -39.29 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.19 Total: 9.80 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -0.96 Total: 2.48 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -1.34 Total: -56.31 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.08 Total: -15.81 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.16 -8.13 -39.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082618978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.133 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds