Wall clock time and date at job start Sun Mar 29 2020 22:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86793 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46949 * 239.99706 * 3 2 1 5 5 H 1.48496 * 109.47431 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47561 * 119.99908 * 3 2 1 7 7 C 1.38949 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99856 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99518 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00709 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99614 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.49704 * 110.99802 * 289.68417 * 13 12 10 15 15 C 1.50134 * 104.73230 * 245.79003 * 14 13 12 16 16 H 1.08999 * 110.04974 * 80.32589 * 15 14 13 17 17 C 1.50738 * 126.53294 * 216.18350 * 15 14 13 18 18 N 1.50181 * 102.14296 * 154.90892 * 17 15 14 19 19 C 1.49698 * 107.65003 * 334.70688 * 18 17 15 20 20 C 1.50144 * 104.73774 * 352.54751 * 19 18 17 21 21 H 1.08998 * 109.78397 * 279.74600 * 20 19 18 22 22 C 1.50185 * 110.99824 * 169.99928 * 13 12 10 23 23 H 0.97002 * 120.00022 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00213 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.47103 * 60.00237 * 12 10 9 26 26 H 1.09000 * 109.47247 * 300.00115 * 12 10 9 27 27 H 1.08994 * 110.39053 * 4.60041 * 14 13 12 28 28 H 1.08996 * 110.38529 * 126.98142 * 14 13 12 29 29 H 1.09000 * 110.86733 * 273.07292 * 17 15 14 30 30 H 1.09007 * 110.87046 * 36.74638 * 17 15 14 31 31 H 1.00900 * 111.00034 * 213.04024 * 18 17 15 32 32 H 1.09001 * 110.38233 * 233.73428 * 19 18 17 33 33 H 1.09000 * 110.38390 * 111.36431 * 19 18 17 34 34 H 1.09000 * 110.86858 * 265.12226 * 22 13 12 35 35 H 1.08994 * 110.86821 * 28.79556 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0011 12 6 1.2438 -4.8629 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 2.9049 -6.0819 -1.3132 15 6 2.4439 -7.3876 -1.8934 16 1 1.4610 -7.2678 -2.3492 17 6 3.2700 -8.3480 -2.7104 18 7 2.5696 -9.6539 -2.4664 19 6 1.8639 -9.5514 -1.1501 20 6 2.3258 -8.2460 -0.5697 21 1 3.3093 -8.3710 -0.1169 22 6 1.4986 -7.2857 0.2468 23 1 -0.4850 0.8401 -0.0004 24 1 0.3534 -2.3907 0.0016 25 1 0.6168 -4.9208 -0.8876 26 1 0.6175 -4.9204 0.8924 27 1 2.6183 -5.2554 -1.9634 28 1 3.9846 -6.0926 -1.1647 29 1 3.2408 -8.0833 -3.7674 30 1 4.2968 -8.3841 -2.3463 31 1 3.2249 -10.4212 -2.4666 32 1 2.1504 -10.3783 -0.5004 33 1 0.7841 -9.5402 -1.2982 34 1 1.5274 -7.5501 1.3038 35 1 0.4721 -7.2503 -0.1179 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082618978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:38 Heat of formation + Delta-G solvation = -25.826385 kcal Electronic energy + Delta-G solvation = -17190.562962 eV Core-core repulsion = 14416.107355 eV Total energy + Delta-G solvation = -2774.455607 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.58942 -39.92820 -36.96987 -35.85738 -33.30114 -31.81773 -31.40315 -28.18529 -27.39907 -26.19598 -23.19188 -21.64385 -21.08411 -20.78195 -19.82642 -17.94242 -17.48091 -16.83212 -16.58178 -16.25889 -15.82484 -15.58668 -15.28021 -14.62056 -14.30428 -14.00796 -13.68622 -13.49683 -13.27931 -13.06139 -12.98309 -12.72536 -12.44193 -12.39839 -12.13123 -11.96839 -11.79856 -11.50159 -11.15402 -10.34090 -10.01519 -9.56180 -9.27811 -8.46702 -5.95716 1.39466 1.41040 1.52196 2.04914 2.27741 2.67793 2.89596 3.12383 3.20101 3.40365 3.64012 3.99423 4.16480 4.29359 4.30534 4.36802 4.43141 4.45826 4.51739 4.59706 4.71671 4.77057 4.85228 4.97460 5.04461 5.14194 5.28233 5.40038 5.60700 5.78649 5.86819 6.06449 6.41203 6.60359 7.12448 7.55710 8.11817 8.70661 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.059830 B = 0.004664 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.883141 B = 6001.881333 C = 6170.566990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.617 6.617 12 C 0.052 3.948 13 N -0.525 5.525 14 C 0.079 3.921 15 C -0.138 4.138 16 H 0.074 0.926 17 C 0.067 3.933 18 N -0.686 5.686 19 C 0.070 3.930 20 C -0.130 4.130 21 H 0.075 0.925 22 C 0.062 3.938 23 H 0.278 0.722 24 H 0.396 0.604 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.349 0.651 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.062 -17.085 -2.544 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.213 5.213 10 C 0.228 3.772 11 O -0.502 6.502 12 C -0.080 4.080 13 N -0.250 5.250 14 C -0.049 4.049 15 C -0.159 4.159 16 H 0.093 0.907 17 C -0.062 4.062 18 N -0.316 5.316 19 C -0.059 4.059 20 C -0.150 4.150 21 H 0.093 0.907 22 C -0.065 4.065 23 H 0.087 0.913 24 H 0.230 0.770 25 H 0.084 0.916 26 H 0.129 0.871 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.165 0.835 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.381 -16.694 -2.549 16.892 hybrid contribution 0.087 1.057 0.032 1.062 sum 0.468 -15.637 -2.517 15.845 Atomic orbital electron populations 1.69670 1.06844 1.29370 1.50340 1.26035 0.96541 1.02375 0.96235 0.84989 0.77771 0.76632 0.78945 1.19720 1.19377 1.19713 1.19623 0.92666 0.84032 1.50071 0.90409 1.41929 1.09279 1.04691 1.65371 1.20770 0.88311 0.85919 0.82206 1.90483 1.15731 1.87890 1.56141 1.21898 0.93803 0.88982 1.03285 1.64895 1.26470 1.02471 1.31163 1.21713 0.99178 0.95237 0.88742 1.22530 1.01260 0.94825 0.97259 0.90731 1.22026 0.95550 0.88548 1.00085 1.63475 1.31969 1.04820 1.31348 1.21842 1.00050 0.94944 0.89104 1.22544 1.01143 0.95758 0.95567 0.90704 1.22355 0.96188 0.86792 1.01150 0.91275 0.77047 0.91600 0.87114 0.94338 0.91930 0.89684 0.92625 0.83461 0.89900 0.90201 0.88689 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.34 13.05 21.66 0.28 -50.06 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.33 -19.36 9.68 84.04 0.81 -18.55 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -30.28 5.29 -306.99 -1.62 -31.91 16 10 C 0.44 21.71 7.34 87.66 0.64 22.36 16 11 O -0.62 -35.21 15.14 -3.06 -0.05 -35.26 16 12 C 0.05 1.88 5.10 85.56 0.44 2.32 16 13 N -0.53 -17.74 4.97 -893.67 -4.44 -22.18 16 14 C 0.08 2.63 5.57 84.83 0.47 3.11 16 15 C -0.14 -3.43 2.90 -10.60 -0.03 -3.47 16 16 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 17 C 0.07 1.36 7.44 84.93 0.63 2.00 16 18 N -0.69 -12.12 7.57 -507.63 -3.84 -15.96 16 19 C 0.07 1.15 7.44 84.84 0.63 1.78 16 20 C -0.13 -2.77 2.91 -10.58 -0.03 -2.80 16 21 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 22 C 0.06 1.48 6.53 84.93 0.55 2.04 16 23 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 24 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 25 H 0.07 2.16 8.06 -2.38 -0.02 2.14 16 26 H 0.11 3.51 8.09 -2.39 -0.02 3.49 16 27 H 0.04 1.45 7.31 -2.39 -0.02 1.43 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.35 4.71 8.94 -89.69 -0.80 3.91 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 1.40 7.88 -2.39 -0.02 1.38 16 Total: -1.00 -67.70 286.09 -3.49 -71.19 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -0.44 Total: 30.11 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 4.59 Total: 8.59 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -9.62 Total: -120.11 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.05 Total: -35.26 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.70 -3.49 -71.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082618978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.366 kcal (2) G-P(sol) polarization free energy of solvation -67.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds