Wall clock time and date at job start Sun Mar 29 2020 22:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00275 * 2 1 4 4 C 1.50695 * 109.46925 * 293.95682 * 3 2 1 5 5 H 1.08005 * 120.00318 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99907 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99955 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99908 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47186 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47041 * 119.99860 * 8 6 4 11 11 H 1.48504 * 109.47028 * 239.99999 * 8 6 4 12 12 C 1.46905 * 110.99705 * 123.95390 * 2 1 3 13 13 C 1.52997 * 109.47150 * 66.04695 * 12 2 1 14 14 H 1.09002 * 109.47153 * 304.99641 * 13 12 2 15 15 O 1.42898 * 109.47319 * 64.99949 * 13 12 2 16 16 C 1.53002 * 109.46817 * 184.99872 * 13 12 2 17 17 N 1.46503 * 109.46922 * 175.00209 * 16 13 12 18 18 C 1.34942 * 126.03966 * 124.99876 * 17 16 13 19 19 C 1.35316 * 107.74697 * 179.97438 * 18 17 16 20 20 C 1.39876 * 107.91963 * 359.97438 * 19 18 17 21 21 N 1.30837 * 108.20063 * 359.74566 * 20 19 18 22 22 H 1.08999 * 109.47085 * 296.04836 * 1 2 3 23 23 H 1.09006 * 109.47338 * 56.04452 * 1 2 3 24 24 H 1.08998 * 109.47507 * 176.04779 * 1 2 3 25 25 H 1.09000 * 109.47194 * 53.95192 * 3 2 1 26 26 H 1.08992 * 109.47514 * 173.95262 * 3 2 1 27 27 H 0.96999 * 119.99977 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47063 * 306.04092 * 12 2 1 29 29 H 1.09004 * 109.46681 * 186.04717 * 12 2 1 30 30 H 0.96698 * 113.99898 * 59.99520 * 15 13 12 31 31 H 1.09000 * 109.47059 * 294.99790 * 16 13 12 32 32 H 1.08996 * 109.47073 * 54.99883 * 16 13 12 33 33 H 1.07996 * 126.12480 * 359.97438 * 18 17 16 34 34 H 1.08001 * 126.04083 * 180.02562 * 19 18 17 35 35 H 1.07998 * 125.90030 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0745 1.5112 -2.0488 6 6 2.0268 3.3495 -1.5284 7 7 2.7112 4.0022 -0.6146 8 14 1.5830 4.1868 -3.1382 9 1 0.8167 3.2438 -3.9919 10 1 0.7550 5.3877 -2.8597 11 1 2.8249 4.5944 -3.8431 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9704 14 1 0.5531 -2.3389 0.8433 15 8 2.2955 -2.7696 -0.1799 16 6 2.0698 -3.0199 2.2132 17 7 1.6160 -4.4087 2.1059 18 6 2.3942 -5.5074 2.1964 19 6 1.5975 -6.5907 2.0450 20 6 0.2874 -6.1384 1.8561 21 7 0.2965 -4.8307 1.8982 22 1 -0.3633 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 1.5611 1.9274 0.8309 26 1 3.0797 1.3444 0.1083 27 1 2.9851 4.9185 -0.7762 28 1 1.5611 -0.3872 2.0628 29 1 3.0797 -0.6611 1.1757 30 1 3.2600 -2.7167 -0.1359 31 1 3.1569 -2.9978 2.2908 32 1 1.6329 -2.5623 3.1008 33 1 3.4615 -5.5200 2.3603 34 1 1.9166 -7.6222 2.0671 35 1 -0.5820 -6.7611 1.7055 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:35 Heat of formation + Delta-G solvation = 35.904435 kcal Electronic energy + Delta-G solvation = -16865.943407 eV Core-core repulsion = 14094.164649 eV Total energy + Delta-G solvation = -2771.778757 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.12153 -38.10051 -35.62633 -33.16587 -32.52386 -30.27556 -29.41122 -27.19825 -26.30803 -24.21169 -21.90311 -21.12154 -20.55617 -20.21718 -17.44260 -16.40265 -16.00556 -15.95513 -15.01321 -14.82919 -14.30574 -14.09436 -13.84098 -13.51397 -13.28435 -12.83916 -12.69436 -12.09332 -11.92892 -11.43014 -11.26125 -10.94162 -10.87678 -10.69440 -10.63441 -10.37065 -10.16189 -9.80637 -9.38471 -9.16283 -8.55791 -8.45868 -7.25134 -6.04867 -4.05710 1.90944 2.47734 2.85027 3.30661 3.38033 3.44008 4.25368 4.40451 4.48811 4.76332 4.79920 5.00388 5.18070 5.27429 5.30654 5.35639 5.48733 5.59289 5.72799 5.94502 5.96766 6.14464 6.25236 6.32933 6.63341 6.76726 6.97700 7.22356 7.28813 7.69718 7.77675 7.87218 8.05272 8.15944 8.51699 9.02619 9.58769 11.06206 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.059698 B = 0.004278 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.918109 B = 6543.460050 C = 6657.676061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.026 3.974 13 C 0.102 3.898 14 H 0.111 0.889 15 O -0.539 6.539 16 C 0.098 3.902 17 N -0.359 5.359 18 C 0.054 3.946 19 C -0.281 4.281 20 C 0.039 3.961 21 N -0.290 5.290 22 H 0.010 0.990 23 H 0.076 0.924 24 H 0.047 0.953 25 H -0.010 1.010 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.367 0.633 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.170 0.830 34 H 0.144 0.856 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 -16.919 7.563 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.104 4.104 13 C 0.041 3.959 14 H 0.129 0.871 15 O -0.342 6.342 16 C -0.025 4.025 17 N -0.140 5.140 18 C -0.093 4.093 19 C -0.310 4.310 20 C -0.147 4.147 21 N -0.112 5.112 22 H 0.028 0.972 23 H 0.095 0.905 24 H 0.066 0.934 25 H 0.008 0.992 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.213 0.787 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.187 0.813 34 H 0.161 0.839 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.663 -15.853 6.907 17.305 hybrid contribution 0.736 0.366 0.301 0.876 sum 0.073 -15.488 7.207 17.083 Atomic orbital electron populations 1.22277 0.88781 0.99745 1.00567 1.62020 1.07016 1.17511 1.38753 1.19759 0.95265 0.81458 0.96775 1.21208 1.34679 0.96857 1.01656 0.91708 1.24993 0.95284 0.97333 0.97059 1.69964 1.38599 1.11396 1.34075 0.86431 0.78177 0.79281 0.83499 1.19587 1.21111 1.20989 1.22681 1.00665 0.93102 0.93958 1.22297 0.99157 0.91076 0.83364 0.87132 1.86687 1.22785 1.83788 1.40949 1.22604 1.00467 0.78004 1.01391 1.48586 1.05191 1.05879 1.54361 1.22526 0.98072 0.86765 1.01915 1.21451 0.93217 0.99316 1.17048 1.23841 0.98315 0.92132 1.00435 1.77347 0.97583 1.13414 1.22866 0.97154 0.90529 0.93392 0.99189 0.95326 0.92990 0.94984 0.90884 0.78683 0.88290 0.88964 0.81261 0.83853 0.80320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.14 60.06 0.55 1.25 16 2 N -0.53 -11.44 4.70 -244.37 -1.15 -12.59 16 3 C 0.19 5.00 4.72 -4.98 -0.02 4.98 16 4 C -0.51 -14.33 8.46 -34.44 -0.29 -14.62 16 5 H 0.06 1.85 7.12 -52.48 -0.37 1.47 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.03 0.43 4.60 -3.82 -0.02 0.41 16 13 C 0.10 1.48 3.05 -26.73 -0.08 1.40 16 14 H 0.11 1.87 6.25 -51.93 -0.32 1.55 16 15 O -0.54 -8.55 13.23 -35.23 -0.47 -9.02 16 16 C 0.10 1.09 6.15 -4.04 -0.02 1.06 16 17 N -0.36 -4.56 3.62 -61.37 -0.22 -4.78 16 18 C 0.05 0.57 11.45 -17.23 -0.20 0.37 16 19 C -0.28 -2.96 10.80 -40.01 -0.43 -3.39 16 20 C 0.04 0.46 12.03 -17.36 -0.21 0.25 16 21 N -0.29 -4.25 12.35 30.63 0.38 -3.87 16 22 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 23 H 0.08 1.67 6.76 -51.93 -0.35 1.32 16 24 H 0.05 0.88 6.37 -51.93 -0.33 0.55 16 25 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 26 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.07 1.15 7.93 -51.93 -0.41 0.73 16 30 H 0.37 4.44 9.05 45.56 0.41 4.86 16 31 H 0.10 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 298.40 15.07 4.50 4.50 Total: -1.00 -33.89 298.40 -6.38 -40.26 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.30 Total: 1.55 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -0.82 Total: -6.83 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.26 Total: -47.24 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.47 Total: -9.02 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.89 -6.38 -40.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.166 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds