Wall clock time and date at job start Sun Mar 29 2020 22:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00275 * 2 1 4 4 C 1.50695 * 109.46925 * 293.95682 * 3 2 1 5 5 H 1.08005 * 120.00318 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99907 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99955 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99908 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47186 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47041 * 119.99860 * 8 6 4 11 11 H 1.48504 * 109.47028 * 239.99999 * 8 6 4 12 12 C 1.46905 * 110.99705 * 123.95390 * 2 1 3 13 13 C 1.52997 * 109.47150 * 66.04695 * 12 2 1 14 14 H 1.09002 * 109.47153 * 304.99641 * 13 12 2 15 15 O 1.42898 * 109.47319 * 64.99949 * 13 12 2 16 16 C 1.53002 * 109.46817 * 184.99872 * 13 12 2 17 17 N 1.46503 * 109.46922 * 175.00209 * 16 13 12 18 18 C 1.34942 * 126.03966 * 124.99876 * 17 16 13 19 19 C 1.35316 * 107.74697 * 179.97438 * 18 17 16 20 20 C 1.39876 * 107.91963 * 359.97438 * 19 18 17 21 21 N 1.30837 * 108.20063 * 359.74566 * 20 19 18 22 22 H 1.08999 * 109.47085 * 296.04836 * 1 2 3 23 23 H 1.09006 * 109.47338 * 56.04452 * 1 2 3 24 24 H 1.08998 * 109.47507 * 176.04779 * 1 2 3 25 25 H 1.09000 * 109.47194 * 53.95192 * 3 2 1 26 26 H 1.08992 * 109.47514 * 173.95262 * 3 2 1 27 27 H 0.96999 * 119.99977 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47063 * 306.04092 * 12 2 1 29 29 H 1.09004 * 109.46681 * 186.04717 * 12 2 1 30 30 H 0.96698 * 113.99898 * 59.99520 * 15 13 12 31 31 H 1.09000 * 109.47059 * 294.99790 * 16 13 12 32 32 H 1.08996 * 109.47073 * 54.99883 * 16 13 12 33 33 H 1.07996 * 126.12480 * 359.97438 * 18 17 16 34 34 H 1.08001 * 126.04083 * 180.02562 * 19 18 17 35 35 H 1.07998 * 125.90030 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0745 1.5112 -2.0488 6 6 2.0268 3.3495 -1.5284 7 7 2.7112 4.0022 -0.6146 8 14 1.5830 4.1868 -3.1382 9 1 0.8167 3.2438 -3.9919 10 1 0.7550 5.3877 -2.8597 11 1 2.8249 4.5944 -3.8431 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9704 14 1 0.5531 -2.3389 0.8433 15 8 2.2955 -2.7696 -0.1799 16 6 2.0698 -3.0199 2.2132 17 7 1.6160 -4.4087 2.1059 18 6 2.3942 -5.5074 2.1964 19 6 1.5975 -6.5907 2.0450 20 6 0.2874 -6.1384 1.8561 21 7 0.2965 -4.8307 1.8982 22 1 -0.3633 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 1.5611 1.9274 0.8309 26 1 3.0797 1.3444 0.1083 27 1 2.9851 4.9185 -0.7762 28 1 1.5611 -0.3872 2.0628 29 1 3.0797 -0.6611 1.1757 30 1 3.2600 -2.7167 -0.1359 31 1 3.1569 -2.9978 2.2908 32 1 1.6329 -2.5623 3.1008 33 1 3.4615 -5.5200 2.3603 34 1 1.9166 -7.6222 2.0671 35 1 -0.5820 -6.7611 1.7055 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083218996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:34 Heat of formation + Delta-G solvation = 9.184976 kcal Electronic energy + Delta-G solvation = -16867.102050 eV Core-core repulsion = 14094.164649 eV Total energy + Delta-G solvation = -2772.937400 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.96671 -39.44068 -37.19606 -34.65138 -34.09760 -31.28261 -30.58100 -29.07132 -27.69122 -25.81951 -23.37849 -22.10344 -21.67708 -21.49024 -18.67392 -18.21440 -17.24165 -17.02502 -16.68311 -16.17572 -15.85479 -15.47167 -14.97047 -14.86167 -14.40204 -14.14358 -13.85318 -13.60334 -13.27124 -13.05620 -12.78704 -12.65518 -12.57674 -12.46493 -12.09287 -11.83786 -11.50113 -11.43693 -11.04020 -10.63602 -10.26546 -9.41396 -9.00398 -8.22630 -6.31979 1.07730 1.39660 1.40538 1.54251 1.65830 2.03777 2.39281 3.08441 3.11927 3.42870 3.70537 3.93837 4.02746 4.07538 4.17614 4.34251 4.43953 4.48743 4.64210 4.67493 4.75387 4.95022 5.00241 5.06005 5.14823 5.21556 5.28137 5.63221 5.81909 6.02733 6.21276 6.27020 6.59943 6.82903 6.83998 6.90877 7.37770 8.88460 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.059698 B = 0.004278 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.918109 B = 6543.460050 C = 6657.676061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.541 5.541 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.004 3.996 7 N -0.933 5.933 8 Si 0.967 3.033 9 H -0.267 1.267 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.026 3.974 13 C 0.117 3.883 14 H 0.084 0.916 15 O -0.561 6.561 16 C 0.103 3.897 17 N -0.371 5.371 18 C 0.055 3.945 19 C -0.290 4.290 20 C 0.030 3.970 21 N -0.344 5.344 22 H 0.014 0.986 23 H 0.055 0.945 24 H 0.067 0.933 25 H -0.036 1.036 26 H 0.011 0.989 27 H 0.265 0.735 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.383 0.617 31 H 0.136 0.864 32 H 0.099 0.901 33 H 0.208 0.792 34 H 0.168 0.832 35 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.089 -18.101 7.553 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.265 5.265 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.194 4.194 7 N -0.573 5.573 8 Si 0.792 3.208 9 H -0.191 1.191 10 H -0.203 1.203 11 H -0.202 1.202 12 C -0.103 4.103 13 C 0.056 3.944 14 H 0.102 0.898 15 O -0.367 6.367 16 C -0.019 4.019 17 N -0.153 5.153 18 C -0.091 4.091 19 C -0.319 4.319 20 C -0.155 4.155 21 N -0.166 5.166 22 H 0.032 0.968 23 H 0.074 0.926 24 H 0.085 0.915 25 H -0.019 1.019 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.232 0.768 31 H 0.154 0.846 32 H 0.117 0.883 33 H 0.224 0.776 34 H 0.186 0.814 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.067 -17.062 6.907 18.408 hybrid contribution 0.527 0.645 0.339 0.899 sum 0.594 -16.418 7.246 17.955 Atomic orbital electron populations 1.22199 0.88177 1.00569 0.99800 1.61911 1.07700 1.15227 1.41683 1.19409 0.93943 0.83564 0.94922 1.21494 1.34846 0.97539 1.02452 0.92401 1.25862 0.94988 0.97958 1.00609 1.70068 1.39379 1.11889 1.36006 0.85363 0.78156 0.78160 0.79118 1.19142 1.20306 1.20157 1.22784 1.01201 0.93890 0.92428 1.22001 0.97710 0.89877 0.84799 0.89783 1.86640 1.24371 1.83805 1.41866 1.22566 1.02628 0.77339 0.99326 1.48682 1.04979 1.06625 1.55038 1.23218 0.99649 0.85947 1.00295 1.21853 0.92626 1.00721 1.16706 1.24366 0.99950 0.91791 0.99408 1.77287 0.99318 1.14884 1.25144 0.96779 0.92603 0.91485 1.01857 0.97131 0.92612 0.94202 0.89733 0.76830 0.84608 0.88290 0.77577 0.81449 0.78343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.14 127.69 1.17 2.84 16 2 N -0.54 -23.57 4.70 -927.05 -4.36 -27.93 16 3 C 0.21 11.03 4.72 85.56 0.40 11.44 16 4 C -0.53 -30.22 8.46 25.60 0.22 -30.00 16 5 H 0.06 3.34 7.12 -2.91 -0.02 3.32 16 6 C 0.00 0.22 5.46 84.66 0.46 0.69 16 7 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 8 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.03 0.85 4.60 86.30 0.40 1.25 16 13 C 0.12 3.27 3.05 30.59 0.09 3.36 16 14 H 0.08 2.83 6.25 -2.39 -0.01 2.81 16 15 O -0.56 -17.06 13.23 -148.98 -1.97 -19.03 16 16 C 0.10 2.07 6.15 86.38 0.53 2.60 16 17 N -0.37 -8.72 3.62 -348.06 -1.26 -9.98 16 18 C 0.06 0.99 11.45 83.54 0.96 1.95 16 19 C -0.29 -5.41 10.80 21.99 0.24 -5.17 16 20 C 0.03 0.68 12.03 85.24 1.03 1.71 16 21 N -0.34 -9.82 12.35 -57.02 -0.70 -10.53 16 22 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.06 2.48 6.76 -2.38 -0.02 2.47 16 24 H 0.07 2.47 6.37 -2.39 -0.02 2.46 16 25 H -0.04 -2.08 8.12 -2.39 -0.02 -2.10 16 26 H 0.01 0.59 7.93 -2.39 -0.02 0.57 16 27 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.04 1.25 8.12 -2.39 -0.02 1.23 16 29 H 0.08 2.54 7.93 -2.39 -0.02 2.52 16 30 H 0.38 8.53 9.05 -74.06 -0.67 7.86 16 31 H 0.14 1.69 8.07 -2.39 -0.02 1.67 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.21 1.93 8.06 -2.91 -0.02 1.90 16 34 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.20 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -73.74 298.40 -0.09 -73.82 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.41 Total: 11.77 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 5.49 Total: -9.34 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -6.04 Total: -104.00 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.97 Total: -19.03 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -73.74 -0.09 -73.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.007 kcal (2) G-P(sol) polarization free energy of solvation -73.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds