Wall clock time and date at job start Sun Mar 29 2020 22:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00247 * 2 1 4 4 H 1.48501 * 109.47095 * 269.99650 * 3 2 1 5 5 H 1.48501 * 109.47026 * 29.99776 * 3 2 1 6 6 H 1.48504 * 109.47216 * 149.99808 * 3 2 1 7 7 C 1.37885 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99770 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00074 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46787 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46880 * 180.02562 * 10 9 7 12 12 C 1.46730 * 110.99814 * 293.95505 * 11 10 9 13 13 C 1.53683 * 109.81504 * 188.74066 * 12 11 10 14 14 N 1.47041 * 106.98269 * 309.42573 * 13 12 11 15 15 C 1.33226 * 128.72858 * 231.90902 * 14 13 12 16 16 O 1.21591 * 123.22436 * 347.81446 * 15 14 13 17 17 N 1.34234 * 113.55036 * 167.84065 * 15 14 13 18 18 C 1.47240 * 109.18312 * 3.90674 * 17 15 14 19 19 C 1.47922 * 122.09349 * 48.59972 * 14 13 12 20 20 H 1.09005 * 111.59420 * 72.90451 * 19 14 13 21 21 C 1.47092 * 110.99997 * 59.67664 * 11 10 9 22 22 H 0.97001 * 119.99903 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47062 * 59.99651 * 9 7 2 24 24 H 1.08998 * 109.46933 * 300.00371 * 9 7 2 25 25 H 1.08995 * 109.47339 * 60.00224 * 10 9 7 26 26 H 1.08996 * 109.47166 * 299.99812 * 10 9 7 27 27 H 1.09000 * 109.41372 * 68.63853 * 12 11 10 28 28 H 1.08994 * 109.41515 * 308.84537 * 12 11 10 29 29 H 1.09005 * 109.94630 * 190.06007 * 13 12 11 30 30 H 1.08996 * 110.02488 * 68.83920 * 13 12 11 31 31 H 0.97003 * 125.41028 * 183.93690 * 17 15 14 32 32 H 1.09004 * 110.55809 * 244.17988 * 18 17 15 33 33 H 1.09001 * 110.55823 * 121.33889 * 18 17 15 34 34 H 1.08997 * 109.60787 * 50.50060 * 21 11 10 35 35 H 1.09005 * 109.60839 * 289.98509 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0023 11 7 5.4905 -2.6367 0.0035 12 6 6.0173 -2.0812 -1.2483 13 6 7.5382 -2.2925 -1.3126 14 7 8.0946 -1.7978 -0.0446 15 6 9.0886 -0.9320 0.1479 16 8 9.8393 -0.5717 -0.7381 17 7 9.1824 -0.4959 1.4140 18 6 8.1877 -1.1976 2.2423 19 6 7.5275 -2.1834 1.2660 20 1 7.7669 -3.2164 1.5185 21 6 6.0167 -1.9428 1.1889 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6805 -0.8888 25 1 3.6585 -3.1510 -0.8875 26 1 3.6577 -3.1498 0.8924 27 1 5.7976 -1.0144 -1.2920 28 1 5.5458 -2.5821 -2.0937 29 1 7.9568 -1.7299 -2.1471 30 1 7.7631 -3.3526 -1.4291 31 1 9.8062 0.1752 1.7326 32 1 7.4515 -0.4954 2.6335 33 1 8.6766 -1.7339 3.0556 34 1 5.5373 -2.3356 2.0855 35 1 5.8202 -0.8739 1.1043 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091753102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:42 Heat of formation + Delta-G solvation = -2.910602 kcal Electronic energy + Delta-G solvation = -17717.863621 eV Core-core repulsion = 14944.401717 eV Total energy + Delta-G solvation = -2773.461904 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.26416 -38.03155 -36.10899 -34.18350 -32.71741 -31.09790 -30.15173 -27.87395 -25.60169 -23.99404 -22.61930 -21.70884 -20.66596 -19.05470 -17.56500 -16.98487 -16.65101 -15.68788 -15.17641 -14.78884 -14.52288 -14.44410 -13.96086 -13.84596 -13.26040 -13.08157 -13.02128 -12.50541 -11.94552 -11.74357 -11.56180 -11.21215 -11.08364 -10.94759 -10.49778 -10.14061 -9.96859 -9.85796 -9.33217 -9.32011 -8.62975 -8.61216 -7.82022 -6.13611 -4.12404 2.57442 3.15896 3.22412 3.30738 3.32130 3.86293 4.04839 4.35854 4.55605 4.71096 4.78893 5.16057 5.20390 5.22605 5.30260 5.36149 5.56245 5.67468 5.84994 5.88981 5.97786 6.09890 6.11767 6.31671 6.58958 6.74109 7.03091 7.04985 7.07586 7.30688 7.45778 7.54168 7.74363 8.42896 8.61438 8.91010 9.48756 10.99608 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031006 B = 0.006696 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.821979 B = 4180.879930 C = 4424.804358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.520 4.520 8 H 0.074 0.926 9 C -0.045 4.045 10 C 0.069 3.931 11 N -0.545 5.545 12 C 0.037 3.963 13 C 0.157 3.843 14 N -0.628 5.628 15 C 0.703 3.297 16 O -0.595 6.595 17 N -0.747 5.747 18 C 0.095 3.905 19 C 0.121 3.879 20 H 0.101 0.899 21 C 0.049 3.951 22 H 0.264 0.736 23 H 0.015 0.985 24 H 0.010 0.990 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.427 0.573 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.509 -4.166 4.425 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.083 4.083 10 C -0.057 4.057 11 N -0.268 5.268 12 C -0.092 4.092 13 C 0.035 3.965 14 N -0.366 5.366 15 C 0.404 3.596 16 O -0.474 6.474 17 N -0.409 5.409 18 C -0.031 4.031 19 C 0.016 3.984 20 H 0.118 0.882 21 C -0.080 4.080 22 H 0.074 0.926 23 H 0.034 0.966 24 H 0.028 0.972 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.268 0.732 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.845 -4.445 3.815 16.894 hybrid contribution 0.132 2.127 0.233 2.143 sum 15.977 -2.319 4.048 16.644 Atomic orbital electron populations 1.69904 1.06251 1.26956 1.50773 1.25021 0.94695 0.99073 0.94473 0.86800 0.80147 0.83843 0.78531 1.20325 1.21254 1.19438 1.21015 0.89124 0.94551 1.51167 0.90807 1.20151 0.98062 0.93911 0.96208 1.22182 0.82811 0.98460 1.02289 1.61878 1.09964 1.53976 1.01032 1.22533 0.93770 0.99246 0.93613 1.21663 0.92153 0.99421 0.83218 1.47397 1.34631 1.47230 1.07379 1.15713 0.81357 0.79395 0.83173 1.90932 1.46654 1.64679 1.45163 1.45228 1.41030 1.45738 1.08887 1.22352 0.91676 0.94965 0.94097 1.22374 0.94369 0.99086 0.82577 0.88167 1.22490 0.92187 0.98145 0.95150 0.92641 0.96631 0.97154 0.91063 0.90993 0.93900 0.89233 0.89272 0.90633 0.73244 0.89906 0.89732 0.89296 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -14.30 9.66 -34.44 -0.33 -14.63 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.04 -1.01 3.40 -27.88 -0.09 -1.10 16 10 C 0.07 1.27 5.25 -3.82 -0.02 1.25 16 11 N -0.55 -8.37 4.72 -234.05 -1.10 -9.47 16 12 C 0.04 0.55 5.15 -3.56 -0.02 0.53 16 13 C 0.16 2.08 7.12 -3.39 -0.02 2.06 16 14 N -0.63 -8.79 3.03 -170.03 -0.51 -9.31 16 15 C 0.70 10.87 8.64 -88.78 -0.77 10.11 16 16 O -0.60 -11.47 17.72 5.29 0.09 -11.38 16 17 N -0.75 -8.54 6.39 -64.92 -0.42 -8.96 16 18 C 0.09 0.87 7.69 -3.30 -0.03 0.84 16 19 C 0.12 1.38 4.11 -66.72 -0.27 1.10 16 20 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 21 C 0.05 0.68 4.18 -3.63 -0.02 0.66 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.02 0.36 5.69 -51.93 -0.30 0.06 16 24 H 0.01 0.24 6.18 -51.93 -0.32 -0.08 16 25 H 0.07 1.32 8.02 -51.93 -0.42 0.90 16 26 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 27 H 0.04 0.73 6.90 -51.93 -0.36 0.37 16 28 H 0.09 1.23 8.00 -51.93 -0.42 0.81 16 29 H 0.09 1.19 7.94 -51.93 -0.41 0.78 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.43 3.98 8.96 -40.82 -0.37 3.61 16 32 H 0.08 0.73 7.65 -51.93 -0.40 0.33 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.05 0.77 6.73 -51.93 -0.35 0.42 16 LS Contribution 277.71 15.07 4.18 4.18 Total: -1.00 -33.56 277.71 -8.35 -41.91 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.03 Total: -0.10 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -1.67 Total: 2.70 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -1.26 Total: -54.24 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.56 -8.35 -41.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091753102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.002 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds