Wall clock time and date at job start Sun Mar 29 2020 22:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00247 * 2 1 4 4 H 1.48501 * 109.47095 * 269.99650 * 3 2 1 5 5 H 1.48501 * 109.47026 * 29.99776 * 3 2 1 6 6 H 1.48504 * 109.47216 * 149.99808 * 3 2 1 7 7 C 1.37885 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99770 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00074 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46787 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46880 * 180.02562 * 10 9 7 12 12 C 1.46730 * 110.99814 * 293.95505 * 11 10 9 13 13 C 1.53683 * 109.81504 * 188.74066 * 12 11 10 14 14 N 1.47041 * 106.98269 * 309.42573 * 13 12 11 15 15 C 1.33226 * 128.72858 * 231.90902 * 14 13 12 16 16 O 1.21591 * 123.22436 * 347.81446 * 15 14 13 17 17 N 1.34234 * 113.55036 * 167.84065 * 15 14 13 18 18 C 1.47240 * 109.18312 * 3.90674 * 17 15 14 19 19 C 1.47922 * 122.09349 * 48.59972 * 14 13 12 20 20 H 1.09005 * 111.59420 * 72.90451 * 19 14 13 21 21 C 1.47092 * 110.99997 * 59.67664 * 11 10 9 22 22 H 0.97001 * 119.99903 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47062 * 59.99651 * 9 7 2 24 24 H 1.08998 * 109.46933 * 300.00371 * 9 7 2 25 25 H 1.08995 * 109.47339 * 60.00224 * 10 9 7 26 26 H 1.08996 * 109.47166 * 299.99812 * 10 9 7 27 27 H 1.09000 * 109.41372 * 68.63853 * 12 11 10 28 28 H 1.08994 * 109.41515 * 308.84537 * 12 11 10 29 29 H 1.09005 * 109.94630 * 190.06007 * 13 12 11 30 30 H 1.08996 * 110.02488 * 68.83920 * 13 12 11 31 31 H 0.97003 * 125.41028 * 183.93690 * 17 15 14 32 32 H 1.09004 * 110.55809 * 244.17988 * 18 17 15 33 33 H 1.09001 * 110.55823 * 121.33889 * 18 17 15 34 34 H 1.08997 * 109.60787 * 50.50060 * 21 11 10 35 35 H 1.09005 * 109.60839 * 289.98509 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0023 11 7 5.4905 -2.6367 0.0035 12 6 6.0173 -2.0812 -1.2483 13 6 7.5382 -2.2925 -1.3126 14 7 8.0946 -1.7978 -0.0446 15 6 9.0886 -0.9320 0.1479 16 8 9.8393 -0.5717 -0.7381 17 7 9.1824 -0.4959 1.4140 18 6 8.1877 -1.1976 2.2423 19 6 7.5275 -2.1834 1.2660 20 1 7.7669 -3.2164 1.5185 21 6 6.0167 -1.9428 1.1889 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6805 -0.8888 25 1 3.6585 -3.1510 -0.8875 26 1 3.6577 -3.1498 0.8924 27 1 5.7976 -1.0144 -1.2920 28 1 5.5458 -2.5821 -2.0937 29 1 7.9568 -1.7299 -2.1471 30 1 7.7631 -3.3526 -1.4291 31 1 9.8062 0.1752 1.7326 32 1 7.4515 -0.4954 2.6335 33 1 8.6766 -1.7339 3.0556 34 1 5.5373 -2.3356 2.0855 35 1 5.8202 -0.8739 1.1043 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091753102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:42 Heat of formation + Delta-G solvation = -29.676135 kcal Electronic energy + Delta-G solvation = -17719.024261 eV Core-core repulsion = 14944.401717 eV Total energy + Delta-G solvation = -2774.622544 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.30477 -39.30279 -37.30519 -35.55720 -34.54377 -32.21088 -31.76833 -29.15230 -26.86694 -25.36588 -23.99332 -22.84988 -22.01769 -20.27659 -19.06155 -18.58332 -17.71457 -16.79910 -16.45633 -16.35109 -15.93945 -15.64354 -15.27213 -15.03016 -14.76349 -14.60825 -14.18225 -13.92355 -13.41553 -13.16315 -12.80317 -12.60822 -12.56506 -12.16915 -12.12736 -11.87258 -11.56314 -11.42654 -11.30907 -10.80475 -10.39008 -9.62676 -9.14414 -8.33805 -6.36930 1.27820 1.29561 1.39242 1.58447 2.03259 2.28592 2.90562 2.99412 3.01435 3.59918 3.69602 3.86122 4.13299 4.23245 4.28116 4.42395 4.53944 4.62622 4.65194 4.71502 4.78112 4.86800 4.92301 4.98834 5.11223 5.36361 5.38741 5.53064 5.69646 6.00180 6.13240 6.18329 6.28541 6.50233 6.72573 7.27696 7.53324 8.82642 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031006 B = 0.006696 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.821979 B = 4180.879930 C = 4424.804358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.944 3.056 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.525 4.525 8 H 0.041 0.959 9 C -0.036 4.036 10 C 0.081 3.919 11 N -0.535 5.535 12 C 0.040 3.960 13 C 0.162 3.838 14 N -0.635 5.635 15 C 0.692 3.308 16 O -0.643 6.643 17 N -0.736 5.736 18 C 0.098 3.902 19 C 0.124 3.876 20 H 0.124 0.876 21 C 0.046 3.954 22 H 0.266 0.734 23 H 0.018 0.982 24 H 0.006 0.994 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.017 0.983 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.436 0.564 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.389 -4.335 5.725 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.564 4.564 8 H 0.059 0.941 9 C -0.075 4.075 10 C -0.046 4.046 11 N -0.258 5.258 12 C -0.090 4.090 13 C 0.040 3.960 14 N -0.372 5.372 15 C 0.392 3.608 16 O -0.526 6.526 17 N -0.398 5.398 18 C -0.027 4.027 19 C 0.021 3.979 20 H 0.142 0.858 21 C -0.083 4.083 22 H 0.075 0.925 23 H 0.036 0.964 24 H 0.024 0.976 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.035 0.965 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.279 0.721 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.123 0.877 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 17.734 -4.628 5.163 19.041 hybrid contribution -0.510 2.107 -0.158 2.173 sum 17.224 -2.522 5.005 18.113 Atomic orbital electron populations 1.70044 1.08054 1.28041 1.52600 1.25896 0.95459 1.02973 0.94381 0.85765 0.79342 0.79311 0.78764 1.19999 1.20712 1.17804 1.21384 0.91759 0.93254 1.50006 0.94097 1.20062 0.94665 0.96900 0.95865 1.21948 0.84858 0.95510 1.02330 1.61900 1.07705 1.54166 1.01983 1.22551 0.95062 0.97605 0.93739 1.21635 0.90657 1.00503 0.83239 1.47541 1.34334 1.46917 1.08454 1.16016 0.81341 0.79571 0.83855 1.90890 1.48470 1.66284 1.46923 1.45221 1.41224 1.45498 1.07870 1.22581 0.91443 0.94745 0.93915 1.22565 0.92423 1.01027 0.81923 0.85849 1.22614 0.94181 0.96546 0.94911 0.92486 0.96368 0.97612 0.91438 0.90670 0.96516 0.88373 0.89838 0.88579 0.72121 0.89162 0.85761 0.87673 0.95740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.44 13.96 21.45 0.30 -58.14 16 2 C 0.01 0.59 5.47 84.66 0.46 1.06 16 3 Si 0.94 44.36 27.47 68.60 1.88 46.24 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 7 C -0.53 -29.21 9.66 25.60 0.25 -28.96 16 8 H 0.04 2.48 7.99 -2.91 -0.02 2.45 16 9 C -0.04 -1.60 3.40 29.85 0.10 -1.50 16 10 C 0.08 2.88 5.25 86.30 0.45 3.33 16 11 N -0.53 -15.30 4.72 -894.41 -4.22 -19.52 16 12 C 0.04 1.11 5.15 86.57 0.45 1.56 16 13 C 0.16 4.01 7.12 86.51 0.62 4.62 16 14 N -0.63 -16.37 3.03 -810.98 -2.46 -18.82 16 15 C 0.69 20.23 8.64 179.70 1.55 21.78 16 16 O -0.64 -24.46 17.72 -4.00 -0.07 -24.54 16 17 N -0.74 -14.83 6.39 -477.89 -3.06 -17.89 16 18 C 0.10 1.39 7.69 86.46 0.66 2.06 16 19 C 0.12 2.40 4.11 45.00 0.18 2.59 16 20 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 21 C 0.05 1.15 4.18 86.33 0.36 1.51 16 22 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 23 H 0.02 0.80 5.69 -2.38 -0.01 0.79 16 24 H 0.01 0.26 6.18 -2.39 -0.01 0.24 16 25 H 0.07 2.44 8.02 -2.39 -0.02 2.42 16 26 H 0.07 2.63 8.13 -2.39 -0.02 2.61 16 27 H 0.02 0.56 6.90 -2.39 -0.02 0.54 16 28 H 0.10 2.56 8.00 -2.39 -0.02 2.54 16 29 H 0.08 2.18 7.94 -2.38 -0.02 2.16 16 30 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.44 7.03 8.96 -92.71 -0.83 6.20 16 32 H 0.09 1.23 7.65 -2.38 -0.02 1.21 16 33 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 2.27 8.08 -2.39 -0.02 2.26 16 35 H 0.02 0.73 6.73 -2.38 -0.02 0.72 16 Total: -1.00 -73.57 277.71 -2.32 -75.89 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.21 Total: 8.73 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 5.09 Total: 8.04 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -9.43 Total: -114.37 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.07 Total: -24.54 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Total: -73.57 -2.32 -75.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091753102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.218 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds