Wall clock time and date at job start Sun Mar 29 2020 22:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46510 * 109.46870 * 2 1 4 4 C 1.36936 * 119.99849 * 275.52891 * 3 2 1 5 5 H 1.07993 * 120.00328 * 33.67251 * 4 3 2 6 6 C 1.38820 * 119.99493 * 213.67004 * 4 3 2 7 7 N 1.31611 * 120.00146 * 23.33144 * 6 4 3 8 8 Si 1.86794 * 119.99672 * 203.32782 * 6 4 3 9 9 H 1.48492 * 109.47385 * 90.00175 * 8 6 4 10 10 H 1.48505 * 109.47085 * 210.00440 * 8 6 4 11 11 H 1.48504 * 109.47444 * 330.00126 * 8 6 4 12 12 C 1.46502 * 119.99577 * 95.52761 * 3 2 1 13 13 C 1.50708 * 109.47045 * 269.99637 * 12 3 2 14 14 C 1.34514 * 125.78667 * 90.00455 * 13 12 3 15 15 C 1.41377 * 106.83925 * 179.77226 * 14 13 12 16 16 C 1.34514 * 106.84338 * 0.22863 * 15 14 13 17 17 C 1.50698 * 125.79311 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47217 * 89.99643 * 17 16 15 19 19 C 1.42894 * 114.00179 * 180.02562 * 18 17 16 20 20 O 1.34295 * 125.78881 * 270.16751 * 13 12 3 21 21 H 1.09002 * 109.47089 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.47267 * 299.99555 * 1 2 3 23 23 H 1.08995 * 109.47547 * 60.00049 * 1 2 3 24 24 H 1.08992 * 109.47182 * 240.00572 * 2 1 3 25 25 H 1.08995 * 109.47547 * 119.99951 * 2 1 3 26 26 H 0.97001 * 120.00405 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46495 * 150.00458 * 12 3 2 28 28 H 1.08992 * 109.47341 * 29.99942 * 12 3 2 29 29 H 1.08006 * 126.57725 * 0.03313 * 14 13 12 30 30 H 1.07999 * 126.57699 * 180.25862 * 15 14 13 31 31 H 1.08995 * 109.47209 * 209.99570 * 17 16 15 32 32 H 1.09006 * 109.47125 * 330.00032 * 17 16 15 33 33 H 1.09005 * 109.47407 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47119 * 300.00111 * 19 18 17 35 35 H 1.08994 * 109.47046 * 60.00234 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1387 2.0649 -1.1804 5 1 1.4396 1.8835 -1.9833 6 6 3.1595 2.9912 -1.3449 7 7 4.2504 2.9052 -0.6136 8 14 2.9849 4.3595 -2.6044 9 1 2.3518 5.5416 -1.9665 10 1 4.3271 4.7338 -3.1180 11 1 2.1372 3.8911 -3.7301 12 6 2.3776 2.0311 1.2629 13 6 1.1674 2.7254 1.8328 14 6 0.2703 2.1793 2.6732 15 6 -0.6888 3.1791 2.9546 16 6 -0.3234 4.2748 2.2652 17 6 -1.0506 5.5947 2.2578 18 8 -0.5417 6.4249 3.3037 19 6 -1.1676 7.7069 3.3848 20 8 0.8001 3.9932 1.5851 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 4.9639 3.5521 -0.7287 27 1 3.1653 2.7628 1.0836 28 1 2.7324 1.2809 1.9695 29 1 0.2830 1.1718 3.0622 30 1 -1.5495 3.0819 3.5997 31 1 -0.8999 6.0872 1.2972 32 1 -2.1156 5.4237 2.4154 33 1 -0.7254 8.2761 4.2025 34 1 -1.0198 8.2434 2.4475 35 1 -2.2348 7.5793 3.5660 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:56 Heat of formation + Delta-G solvation = -10.368431 kcal Electronic energy + Delta-G solvation = -17464.401480 eV Core-core repulsion = 14658.323429 eV Total energy + Delta-G solvation = -2806.078051 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.75459 -37.72122 -36.01651 -32.34648 -31.85767 -31.05952 -29.16096 -27.36319 -25.93803 -24.27824 -22.92372 -20.99738 -20.49726 -19.45171 -16.92624 -16.57811 -16.22445 -15.63240 -15.11312 -14.89717 -14.22726 -13.77325 -13.64022 -13.28523 -12.72633 -12.51199 -12.42829 -12.01982 -11.72289 -11.50931 -11.29598 -11.16284 -11.10663 -10.74698 -10.53691 -10.07490 -10.04165 -9.88331 -9.70789 -9.12528 -8.54691 -7.60820 -6.73929 -5.86308 -3.39901 2.33225 3.24892 3.38799 3.45123 3.46471 3.58688 4.25205 4.47596 5.06096 5.23170 5.27622 5.31701 5.39835 5.49857 5.53505 5.58994 5.67753 5.87298 6.04383 6.32790 6.36330 6.39939 6.53949 6.62486 6.68151 6.87837 6.89195 7.11871 7.14372 7.23787 7.50045 7.78541 8.06078 8.43692 9.09057 9.73666 10.27529 11.15012 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.008872 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.898372 B = 3155.142364 C = 4136.602374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 N -0.571 5.571 4 C -0.260 4.260 5 H 0.064 0.936 6 C 0.014 3.986 7 N -0.884 5.884 8 Si 0.898 3.102 9 H -0.284 1.284 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.197 3.803 13 C 0.042 3.958 14 C -0.252 4.252 15 C -0.180 4.180 16 C -0.058 4.058 17 C 0.150 3.850 18 O -0.386 6.386 19 C 0.031 3.969 20 O -0.158 6.158 21 H 0.036 0.964 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.037 0.963 26 H 0.258 0.742 27 H 0.116 0.884 28 H 0.064 0.936 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 3.101 6.461 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.016 3.984 3 N -0.290 5.290 4 C -0.390 4.390 5 H 0.082 0.918 6 C -0.186 4.186 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.216 1.216 11 H -0.202 1.202 12 C 0.070 3.930 13 C -0.013 4.013 14 C -0.273 4.273 15 C -0.200 4.200 16 C -0.109 4.109 17 C 0.074 3.926 18 O -0.306 6.306 19 C -0.065 4.065 20 O -0.053 6.053 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.134 0.866 28 H 0.082 0.918 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.844 3.313 6.340 11.375 hybrid contribution -0.671 0.793 -0.590 1.195 sum -9.515 4.106 5.749 11.851 Atomic orbital electron populations 1.22381 0.99797 0.99082 1.01843 1.20901 0.91939 0.86512 0.99098 1.43810 1.75135 1.08249 1.01846 1.19041 1.08170 1.18990 0.92760 0.91848 1.25070 0.94035 1.01083 0.98456 1.69934 1.04698 1.35586 1.42426 0.86358 0.77040 0.82854 0.81004 1.21070 1.21630 1.20226 1.19856 0.90639 0.96198 0.86335 1.24988 1.00156 0.81026 0.95133 1.21398 0.98229 1.00753 1.06885 1.21393 1.02002 0.93574 1.03001 1.21591 0.91624 0.96315 1.01323 1.20534 0.94787 0.86040 0.91238 1.88010 1.62670 1.26490 1.53382 1.22739 0.97160 0.84904 1.01723 1.84108 1.35141 1.30078 1.55951 0.94498 0.92953 0.93359 0.93362 0.94424 0.93243 0.86647 0.91783 0.84511 0.84672 0.91851 0.90805 0.89585 0.93954 0.94105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 10.21 37.16 0.38 -2.86 16 2 C 0.14 2.97 6.44 -4.04 -0.03 2.95 16 3 N -0.57 -14.24 2.45 -174.61 -0.43 -14.67 16 4 C -0.26 -7.15 9.48 -15.06 -0.14 -7.30 16 5 H 0.06 1.75 7.93 -52.49 -0.42 1.34 16 6 C 0.01 0.39 4.94 -17.43 -0.09 0.30 16 7 N -0.88 -25.26 11.32 55.49 0.63 -24.63 16 8 Si 0.90 21.99 29.61 -169.99 -5.03 16.96 16 9 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.20 4.73 5.86 -5.19 -0.03 4.70 16 13 C 0.04 0.96 6.86 -35.62 -0.24 0.71 16 14 C -0.25 -4.99 9.20 -39.70 -0.37 -5.35 16 15 C -0.18 -3.32 10.81 -39.70 -0.43 -3.75 16 16 C -0.06 -1.15 6.95 -35.63 -0.25 -1.40 16 17 C 0.15 2.35 6.47 36.00 0.23 2.58 16 18 O -0.39 -6.15 10.69 -35.23 -0.38 -6.53 16 19 C 0.03 0.34 11.01 101.05 1.11 1.45 16 20 O -0.16 -3.75 10.65 5.71 0.06 -3.69 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 1.00 6.39 -51.92 -0.33 0.67 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 25 H 0.04 0.72 7.83 -51.93 -0.41 0.31 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.12 3.13 5.31 -51.93 -0.28 2.86 16 28 H 0.06 1.39 7.86 -51.93 -0.41 0.98 16 29 H 0.14 2.41 8.06 -52.48 -0.42 1.99 16 30 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 299.08 15.07 4.51 4.51 Total: -1.00 -30.69 299.08 -5.69 -36.38 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.20 Total: -0.35 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 0.15 Total: -7.97 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.20 Total: -39.30 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.32 Total: -10.22 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.69 -5.69 -36.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.011 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds