Wall clock time and date at job start Sun Mar 29 2020 22:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46510 * 109.46870 * 2 1 4 4 C 1.36936 * 119.99849 * 275.52891 * 3 2 1 5 5 H 1.07993 * 120.00328 * 33.67251 * 4 3 2 6 6 C 1.38820 * 119.99493 * 213.67004 * 4 3 2 7 7 N 1.31611 * 120.00146 * 23.33144 * 6 4 3 8 8 Si 1.86794 * 119.99672 * 203.32782 * 6 4 3 9 9 H 1.48492 * 109.47385 * 90.00175 * 8 6 4 10 10 H 1.48505 * 109.47085 * 210.00440 * 8 6 4 11 11 H 1.48504 * 109.47444 * 330.00126 * 8 6 4 12 12 C 1.46502 * 119.99577 * 95.52761 * 3 2 1 13 13 C 1.50708 * 109.47045 * 269.99637 * 12 3 2 14 14 C 1.34514 * 125.78667 * 90.00455 * 13 12 3 15 15 C 1.41377 * 106.83925 * 179.77226 * 14 13 12 16 16 C 1.34514 * 106.84338 * 0.22863 * 15 14 13 17 17 C 1.50698 * 125.79311 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47217 * 89.99643 * 17 16 15 19 19 C 1.42894 * 114.00179 * 180.02562 * 18 17 16 20 20 O 1.34295 * 125.78881 * 270.16751 * 13 12 3 21 21 H 1.09002 * 109.47089 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.47267 * 299.99555 * 1 2 3 23 23 H 1.08995 * 109.47547 * 60.00049 * 1 2 3 24 24 H 1.08992 * 109.47182 * 240.00572 * 2 1 3 25 25 H 1.08995 * 109.47547 * 119.99951 * 2 1 3 26 26 H 0.97001 * 120.00405 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46495 * 150.00458 * 12 3 2 28 28 H 1.08992 * 109.47341 * 29.99942 * 12 3 2 29 29 H 1.08006 * 126.57725 * 0.03313 * 14 13 12 30 30 H 1.07999 * 126.57699 * 180.25862 * 15 14 13 31 31 H 1.08995 * 109.47209 * 209.99570 * 17 16 15 32 32 H 1.09006 * 109.47125 * 330.00032 * 17 16 15 33 33 H 1.09005 * 109.47407 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47119 * 300.00111 * 19 18 17 35 35 H 1.08994 * 109.47046 * 60.00234 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1387 2.0649 -1.1804 5 1 1.4396 1.8835 -1.9833 6 6 3.1595 2.9912 -1.3449 7 7 4.2504 2.9052 -0.6136 8 14 2.9849 4.3595 -2.6044 9 1 2.3518 5.5416 -1.9665 10 1 4.3271 4.7338 -3.1180 11 1 2.1372 3.8911 -3.7301 12 6 2.3776 2.0311 1.2629 13 6 1.1674 2.7254 1.8328 14 6 0.2703 2.1793 2.6732 15 6 -0.6888 3.1791 2.9546 16 6 -0.3234 4.2748 2.2652 17 6 -1.0506 5.5947 2.2578 18 8 -0.5417 6.4249 3.3037 19 6 -1.1676 7.7069 3.3848 20 8 0.8001 3.9932 1.5851 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 4.9639 3.5521 -0.7287 27 1 3.1653 2.7628 1.0836 28 1 2.7324 1.2809 1.9695 29 1 0.2830 1.1718 3.0622 30 1 -1.5495 3.0819 3.5997 31 1 -0.8999 6.0872 1.2972 32 1 -2.1156 5.4237 2.4154 33 1 -0.7254 8.2761 4.2025 34 1 -1.0198 8.2434 2.4475 35 1 -2.2348 7.5793 3.5660 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:55 Heat of formation + Delta-G solvation = -29.230761 kcal Electronic energy + Delta-G solvation = -17465.219412 eV Core-core repulsion = 14658.323429 eV Total energy + Delta-G solvation = -2806.895983 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.34689 -38.83530 -37.85634 -34.05242 -33.68901 -32.57573 -30.77097 -28.88646 -27.15986 -25.97095 -24.50584 -22.56262 -22.26684 -21.04549 -18.84726 -17.88970 -17.58450 -16.95070 -16.68323 -16.48262 -15.88221 -15.64314 -15.31450 -14.65822 -14.29450 -14.16217 -13.61740 -13.50706 -13.28308 -13.06708 -12.86317 -12.80157 -12.62769 -12.39223 -12.35730 -12.01556 -11.88513 -11.60360 -10.76181 -10.65407 -10.59450 -9.18478 -8.72840 -7.91904 -5.49266 0.81558 1.39607 1.44940 1.50518 1.74830 2.14789 2.46725 3.08376 3.20124 3.73296 3.85928 4.11413 4.19158 4.31606 4.33993 4.43572 4.51312 4.54397 4.65617 4.76931 4.82571 4.86183 4.98630 5.07439 5.12202 5.27412 5.30545 5.49524 5.57936 5.65462 5.81393 6.10897 6.34901 6.51828 7.06626 7.76676 8.26251 9.05422 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.008872 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.898372 B = 3155.142364 C = 4136.602374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.136 3.864 3 N -0.587 5.587 4 C -0.266 4.266 5 H 0.055 0.945 6 C -0.032 4.032 7 N -0.911 5.911 8 Si 0.950 3.050 9 H -0.292 1.292 10 H -0.287 1.287 11 H -0.267 1.267 12 C 0.202 3.798 13 C 0.003 3.997 14 C -0.233 4.233 15 C -0.178 4.178 16 C -0.071 4.071 17 C 0.150 3.850 18 O -0.417 6.417 19 C 0.024 3.976 20 O -0.198 6.198 21 H 0.071 0.929 22 H 0.049 0.951 23 H 0.028 0.972 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.254 0.746 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.160 0.840 30 H 0.174 0.826 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.546 3.037 7.435 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.011 3.989 3 N -0.308 5.308 4 C -0.396 4.396 5 H 0.073 0.927 6 C -0.230 4.230 7 N -0.554 5.554 8 Si 0.778 3.222 9 H -0.220 1.220 10 H -0.213 1.213 11 H -0.191 1.191 12 C 0.075 3.925 13 C -0.051 4.051 14 C -0.253 4.253 15 C -0.197 4.197 16 C -0.121 4.121 17 C 0.075 3.925 18 O -0.337 6.337 19 C -0.071 4.071 20 O -0.095 6.095 21 H 0.089 0.911 22 H 0.068 0.932 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.178 0.822 30 H 0.191 0.809 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.083 3.233 7.319 13.670 hybrid contribution -0.052 0.832 -0.799 1.155 sum -11.135 4.065 6.520 13.529 Atomic orbital electron populations 1.22207 0.97811 1.00930 1.00694 1.21059 0.93400 0.84736 0.99678 1.44002 1.75605 1.09722 1.01425 1.19177 1.07506 1.19380 0.93574 0.92729 1.25683 0.93995 1.02891 1.00414 1.70042 1.05239 1.36186 1.43980 0.85535 0.77006 0.80195 0.79447 1.21955 1.21305 1.19148 1.19587 0.90599 0.95866 0.86487 1.24638 1.01109 0.81568 0.97774 1.21686 0.97059 1.01745 1.04781 1.21811 1.02641 0.92369 1.02875 1.22548 0.90373 0.98630 1.00506 1.20724 0.96002 0.84474 0.91326 1.87948 1.64070 1.28430 1.53251 1.23007 0.98560 0.82944 1.02630 1.84050 1.37147 1.30792 1.57481 0.91064 0.93168 0.95324 0.94172 0.92398 0.93639 0.90298 0.90216 0.82210 0.80897 0.92168 0.86995 0.88259 0.93428 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.64 10.21 71.98 0.73 -4.91 16 2 C 0.14 5.60 6.44 86.38 0.56 6.16 16 3 N -0.59 -29.58 2.45 -706.34 -1.73 -31.31 16 4 C -0.27 -14.93 9.48 84.04 0.80 -14.13 16 5 H 0.06 3.08 7.93 -2.91 -0.02 3.06 16 6 C -0.03 -1.82 4.94 84.87 0.42 -1.40 16 7 N -0.91 -53.70 11.32 21.65 0.25 -53.45 16 8 Si 0.95 46.16 29.61 68.60 2.03 48.19 16 9 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.20 9.86 5.86 85.64 0.50 10.36 16 13 C 0.00 0.13 6.86 24.84 0.17 0.30 16 14 C -0.23 -8.72 9.20 22.19 0.20 -8.52 16 15 C -0.18 -6.06 10.81 22.19 0.24 -5.82 16 16 C -0.07 -2.71 6.95 24.83 0.17 -2.54 16 17 C 0.15 4.40 6.47 71.24 0.46 4.87 16 18 O -0.42 -12.51 10.69 -148.98 -1.59 -14.10 16 19 C 0.02 0.46 11.01 113.37 1.25 1.71 16 20 O -0.20 -9.52 10.65 -2.49 -0.03 -9.54 16 21 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 22 H 0.05 1.81 6.39 -2.38 -0.02 1.79 16 23 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 25 H 0.06 2.12 7.83 -2.39 -0.02 2.11 16 26 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.08 4.48 5.31 -2.39 -0.01 4.46 16 28 H 0.08 3.48 7.86 -2.39 -0.02 3.46 16 29 H 0.16 5.12 8.06 -2.91 -0.02 5.09 16 30 H 0.17 4.47 8.06 -2.91 -0.02 4.44 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -67.67 299.08 5.49 -62.18 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.06 Total: 11.96 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 5.51 Total: -13.93 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.48 Total: -84.76 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -1.62 Total: -23.65 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -67.67 5.49 -62.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.949 kcal (2) G-P(sol) polarization free energy of solvation -67.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds