Wall clock time and date at job start Sun Mar 29 2020 22:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.50709 * 109.46848 * 119.99424 * 2 1 3 5 5 H 1.07999 * 119.99920 * 120.00112 * 4 2 1 6 6 C 1.37877 * 120.00052 * 300.00103 * 4 2 1 7 7 N 1.31513 * 119.99807 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00163 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47433 * 89.99557 * 8 6 4 10 10 H 1.48500 * 109.47228 * 210.00115 * 8 6 4 11 11 H 1.48506 * 109.46928 * 329.99776 * 8 6 4 12 12 N 1.46894 * 109.47670 * 239.99472 * 2 1 3 13 13 C 1.46901 * 110.99852 * 306.05159 * 12 2 1 14 14 C 1.46903 * 110.99739 * 69.99764 * 12 2 1 15 15 C 1.50704 * 109.46973 * 170.00408 * 14 12 2 16 16 C 1.34515 * 125.79063 * 90.00036 * 15 14 12 17 17 C 1.41385 * 106.83992 * 180.02562 * 16 15 14 18 18 C 1.34512 * 106.83926 * 0.23220 * 17 16 15 19 19 C 1.50702 * 125.78762 * 179.76997 * 18 17 16 20 20 O 1.42900 * 109.47257 * 89.99768 * 19 18 17 21 21 O 1.34305 * 108.42433 * 359.63135 * 18 17 16 22 22 H 1.08996 * 109.47277 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47279 * 300.00465 * 1 2 3 24 24 H 1.08996 * 109.46669 * 60.00400 * 1 2 3 25 25 H 0.97004 * 119.99777 * 180.02562 * 7 6 4 26 26 H 1.08995 * 109.47308 * 183.94809 * 13 12 2 27 27 H 1.08996 * 109.47071 * 303.94737 * 13 12 2 28 28 H 1.09001 * 109.47555 * 63.95048 * 13 12 2 29 29 H 1.08996 * 109.47126 * 50.00665 * 14 12 2 30 30 H 1.09000 * 109.47165 * 290.00520 * 14 12 2 31 31 H 1.08001 * 126.57926 * 0.06103 * 16 15 14 32 32 H 1.08002 * 126.57514 * 179.97438 * 17 16 15 33 33 H 1.08999 * 109.47456 * 209.99695 * 19 18 17 34 34 H 1.09008 * 109.47140 * 329.99897 * 19 18 17 35 35 H 0.96699 * 114.00073 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 2.1379 -0.8588 3.5567 8 14 0.6246 1.2792 2.6541 9 1 -0.8030 0.8729 2.6997 10 1 0.9757 1.9954 3.9067 11 1 0.8470 2.1766 1.4919 12 7 2.0198 -0.6926 -1.1993 13 6 1.4344 -2.0355 -1.3076 14 6 1.7530 0.0971 -2.4090 15 6 2.4775 -0.5165 -3.5793 16 6 1.9846 -1.4582 -4.4037 17 6 2.9943 -1.7417 -5.3520 18 6 4.0457 -0.9599 -5.0471 19 6 5.3592 -0.9224 -5.7849 20 8 5.2924 0.0531 -6.8271 21 8 3.7252 -0.2164 -3.9756 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.9032 -0.5275 4.4377 26 1 1.8664 -2.5522 -2.1646 27 1 1.6466 -2.5988 -0.3989 28 1 0.3556 -1.9521 -1.4398 29 1 2.1026 1.1187 -2.2604 30 1 0.6815 0.1051 -2.6087 31 1 1.0053 -1.9105 -4.3517 32 1 2.9345 -2.4527 -6.1627 33 1 6.1580 -0.6592 -5.0916 34 1 5.5614 -1.9025 -6.2171 35 1 6.1052 0.1314 -7.3451 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090834.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:18 Heat of formation + Delta-G solvation = -15.022292 kcal Electronic energy + Delta-G solvation = -17143.909487 eV Core-core repulsion = 14337.629630 eV Total energy + Delta-G solvation = -2806.279857 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.38907 -37.58601 -36.96950 -33.11165 -32.64017 -31.22688 -29.45757 -27.62129 -25.41263 -25.12277 -22.88245 -21.55319 -20.03993 -19.34866 -17.80032 -16.78372 -16.51096 -15.77025 -15.29242 -14.84595 -14.57616 -14.25725 -13.90113 -13.14224 -13.10980 -12.99780 -12.61503 -12.25745 -12.07344 -11.87097 -11.53073 -11.22728 -11.08961 -10.88347 -10.39430 -10.29394 -10.05363 -9.68548 -9.55081 -9.10771 -8.60269 -8.24122 -7.42935 -6.07463 -4.05843 1.80305 2.71128 3.02676 3.24514 3.34836 3.37596 4.29389 4.38263 4.75278 4.84581 4.99225 5.08710 5.21966 5.22664 5.28400 5.58877 5.79009 5.94303 6.05261 6.09221 6.17108 6.23072 6.25148 6.29204 6.49310 6.65269 6.70261 6.85236 7.12547 7.33100 7.39684 7.58917 7.85116 7.98840 8.62833 9.00599 9.53954 11.05633 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.043478 B = 0.005219 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.843120 B = 5364.135717 C = 5448.513464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.181 3.819 3 H 0.041 0.959 4 C -0.501 4.501 5 H 0.083 0.917 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.268 1.268 12 N -0.519 5.519 13 C 0.028 3.972 14 C 0.121 3.879 15 C 0.035 3.965 16 C -0.222 4.222 17 C -0.182 4.182 18 C -0.035 4.035 19 C 0.161 3.839 20 O -0.568 6.568 21 O -0.161 6.161 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.028 0.972 25 H 0.264 0.736 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.019 0.981 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.054 -0.295 -17.802 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.074 3.926 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.207 1.207 10 H -0.224 1.224 11 H -0.193 1.193 12 N -0.243 5.243 13 C -0.120 4.120 14 C -0.007 4.007 15 C -0.016 4.016 16 C -0.242 4.242 17 C -0.201 4.201 18 C -0.086 4.086 19 C 0.084 3.916 20 O -0.375 6.375 21 O -0.056 6.056 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.038 0.962 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.173 -0.057 -17.162 17.300 hybrid contribution -1.132 0.597 -0.111 1.285 sum 1.041 0.540 -17.273 17.313 Atomic orbital electron populations 1.22849 1.01501 1.01271 0.99037 1.19836 0.88841 0.95342 0.88567 0.94085 1.20901 1.31582 1.13842 0.87633 0.89948 1.24906 0.95897 0.96587 0.95774 1.69877 1.45655 1.40326 0.97870 0.86893 0.80519 0.83910 0.77018 1.20741 1.22364 1.19331 1.62166 1.59003 1.02575 1.00519 1.22385 0.95970 0.91231 1.02464 1.20605 0.95604 0.97788 0.86733 1.22597 0.82576 0.98676 0.97798 1.21528 1.01759 1.02410 0.98485 1.21507 0.93209 1.03521 1.01880 1.21809 0.98123 0.97304 0.91338 1.20238 0.90869 0.92362 0.88151 1.86576 1.41851 1.60894 1.48162 1.83992 1.30054 1.53009 1.38553 0.92242 0.93506 0.95274 0.92601 0.93001 0.89954 0.96244 0.89516 0.92008 0.83659 0.83769 0.91688 0.90469 0.76888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.00 7.92 37.16 0.29 -3.70 16 2 C 0.18 4.26 1.90 -68.86 -0.13 4.13 16 3 H 0.04 1.00 6.99 -51.93 -0.36 0.63 16 4 C -0.50 -13.96 8.49 -34.44 -0.29 -14.25 16 5 H 0.08 2.52 7.37 -52.49 -0.39 2.13 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 8 Si 0.89 21.72 24.37 -169.99 -4.14 17.58 16 9 H -0.28 -6.69 6.87 56.52 0.39 -6.30 16 10 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.27 -6.29 6.53 56.52 0.37 -5.92 16 12 N -0.52 -10.91 4.69 -237.73 -1.12 -12.02 16 13 C 0.03 0.53 8.40 60.07 0.50 1.04 16 14 C 0.12 2.14 5.07 -4.97 -0.03 2.12 16 15 C 0.04 0.61 6.22 -35.62 -0.22 0.39 16 16 C -0.22 -3.38 9.40 -39.70 -0.37 -3.75 16 17 C -0.18 -2.56 10.81 -39.70 -0.43 -2.99 16 18 C -0.04 -0.53 6.95 -35.62 -0.25 -0.78 16 19 C 0.16 1.69 7.57 36.01 0.27 1.96 16 20 O -0.57 -5.98 13.64 -35.23 -0.48 -6.46 16 21 O -0.16 -2.86 10.65 5.70 0.06 -2.80 16 22 H 0.06 1.24 6.42 -51.93 -0.33 0.90 16 23 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 24 H 0.03 0.53 6.91 -51.93 -0.36 0.17 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 26 H 0.05 0.91 6.31 -51.93 -0.33 0.58 16 27 H 0.08 1.76 6.76 -51.93 -0.35 1.41 16 28 H 0.02 0.34 6.46 -51.93 -0.34 0.01 16 29 H 0.09 1.51 7.93 -51.93 -0.41 1.10 16 30 H 0.06 0.99 7.06 -51.93 -0.37 0.63 16 31 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.38 1.79 9.12 45.56 0.42 2.21 16 LS Contribution 281.31 15.07 4.24 4.24 Total: -1.00 -32.88 281.31 -5.27 -38.15 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -3.86 Total: 1.79 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -0.75 Total: -13.94 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.34 Total: -38.56 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.42 Total: -9.26 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.58 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.88 -5.27 -38.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090834.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.130 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds