Wall clock time and date at job start Sun Mar 29 2020 22:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.50709 * 109.46848 * 119.99424 * 2 1 3 5 5 H 1.07999 * 119.99920 * 120.00112 * 4 2 1 6 6 C 1.37877 * 120.00052 * 300.00103 * 4 2 1 7 7 N 1.31513 * 119.99807 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00163 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47433 * 89.99557 * 8 6 4 10 10 H 1.48500 * 109.47228 * 210.00115 * 8 6 4 11 11 H 1.48506 * 109.46928 * 329.99776 * 8 6 4 12 12 N 1.46894 * 109.47670 * 239.99472 * 2 1 3 13 13 C 1.46901 * 110.99852 * 306.05159 * 12 2 1 14 14 C 1.46903 * 110.99739 * 69.99764 * 12 2 1 15 15 C 1.50704 * 109.46973 * 170.00408 * 14 12 2 16 16 C 1.34515 * 125.79063 * 90.00036 * 15 14 12 17 17 C 1.41385 * 106.83992 * 180.02562 * 16 15 14 18 18 C 1.34512 * 106.83926 * 0.23220 * 17 16 15 19 19 C 1.50702 * 125.78762 * 179.76997 * 18 17 16 20 20 O 1.42900 * 109.47257 * 89.99768 * 19 18 17 21 21 O 1.34305 * 108.42433 * 359.63135 * 18 17 16 22 22 H 1.08996 * 109.47277 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47279 * 300.00465 * 1 2 3 24 24 H 1.08996 * 109.46669 * 60.00400 * 1 2 3 25 25 H 0.97004 * 119.99777 * 180.02562 * 7 6 4 26 26 H 1.08995 * 109.47308 * 183.94809 * 13 12 2 27 27 H 1.08996 * 109.47071 * 303.94737 * 13 12 2 28 28 H 1.09001 * 109.47555 * 63.95048 * 13 12 2 29 29 H 1.08996 * 109.47126 * 50.00665 * 14 12 2 30 30 H 1.09000 * 109.47165 * 290.00520 * 14 12 2 31 31 H 1.08001 * 126.57926 * 0.06103 * 16 15 14 32 32 H 1.08002 * 126.57514 * 179.97438 * 17 16 15 33 33 H 1.08999 * 109.47456 * 209.99695 * 19 18 17 34 34 H 1.09008 * 109.47140 * 329.99897 * 19 18 17 35 35 H 0.96699 * 114.00073 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 2.1379 -0.8588 3.5567 8 14 0.6246 1.2792 2.6541 9 1 -0.8030 0.8729 2.6997 10 1 0.9757 1.9954 3.9067 11 1 0.8470 2.1766 1.4919 12 7 2.0198 -0.6926 -1.1993 13 6 1.4344 -2.0355 -1.3076 14 6 1.7530 0.0971 -2.4090 15 6 2.4775 -0.5165 -3.5793 16 6 1.9846 -1.4582 -4.4037 17 6 2.9943 -1.7417 -5.3520 18 6 4.0457 -0.9599 -5.0471 19 6 5.3592 -0.9224 -5.7849 20 8 5.2924 0.0531 -6.8271 21 8 3.7252 -0.2164 -3.9756 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.9032 -0.5275 4.4377 26 1 1.8664 -2.5522 -2.1646 27 1 1.6466 -2.5988 -0.3989 28 1 0.3556 -1.9521 -1.4398 29 1 2.1026 1.1187 -2.2604 30 1 0.6815 0.1051 -2.6087 31 1 1.0053 -1.9105 -4.3517 32 1 2.9345 -2.4527 -6.1627 33 1 6.1580 -0.6592 -5.0916 34 1 5.5614 -1.9025 -6.2171 35 1 6.1052 0.1314 -7.3451 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090834.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:17 Heat of formation + Delta-G solvation = -41.866710 kcal Electronic energy + Delta-G solvation = -17145.073548 eV Core-core repulsion = 14337.629630 eV Total energy + Delta-G solvation = -2807.443918 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.55307 -39.20612 -37.76407 -34.93662 -33.95962 -32.74074 -30.94051 -28.91634 -27.22498 -26.59813 -24.30710 -22.71483 -21.39697 -20.93154 -18.72501 -18.57309 -17.82485 -17.16284 -16.83327 -16.00509 -15.92720 -15.72203 -15.34532 -14.78699 -14.59481 -14.11999 -14.00139 -13.73670 -13.67660 -13.16951 -13.05849 -12.74173 -12.64950 -12.50442 -12.09522 -11.87939 -11.44395 -11.13189 -11.08342 -10.82131 -10.75224 -9.43830 -8.99083 -8.27108 -6.30313 0.65464 1.30869 1.37354 1.47091 1.59619 1.95437 2.32856 3.06936 3.29025 3.48042 3.87354 4.04118 4.12319 4.16939 4.32699 4.39383 4.42205 4.47337 4.56374 4.61727 4.66173 4.79123 4.85855 4.97374 5.04170 5.14970 5.20927 5.40450 5.59994 5.62410 5.99244 6.21483 6.35968 6.63332 6.75478 6.87591 7.34010 8.89913 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.043478 B = 0.005219 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.843120 B = 5364.135717 C = 5448.513464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.185 3.815 3 H 0.036 0.964 4 C -0.504 4.504 5 H 0.036 0.964 6 C 0.012 3.988 7 N -0.950 5.950 8 Si 0.951 3.049 9 H -0.265 1.265 10 H -0.300 1.300 11 H -0.248 1.248 12 N -0.542 5.542 13 C 0.037 3.963 14 C 0.126 3.874 15 C 0.000 4.000 16 C -0.213 4.213 17 C -0.188 4.188 18 C -0.049 4.049 19 C 0.161 3.839 20 O -0.589 6.589 21 O -0.190 6.190 22 H 0.059 0.941 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.266 0.734 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.165 0.835 32 H 0.174 0.826 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 0.373 -20.275 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.077 3.923 3 H 0.053 0.947 4 C -0.542 4.542 5 H 0.054 0.946 6 C -0.185 4.185 7 N -0.590 5.590 8 Si 0.778 3.222 9 H -0.191 1.191 10 H -0.228 1.228 11 H -0.172 1.172 12 N -0.266 5.266 13 C -0.111 4.111 14 C -0.002 4.002 15 C -0.051 4.051 16 C -0.232 4.232 17 C -0.207 4.207 18 C -0.099 4.099 19 C 0.084 3.916 20 O -0.400 6.400 21 O -0.087 6.087 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.182 0.818 32 H 0.192 0.808 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.067 0.607 -19.684 19.722 hybrid contribution -0.644 0.294 0.538 0.889 sum 0.423 0.901 -19.146 19.172 Atomic orbital electron populations 1.22707 0.99218 1.01788 1.00352 1.19612 0.90485 0.94360 0.87861 0.94658 1.21140 1.30541 1.12546 0.89995 0.94591 1.25772 0.97500 1.00002 0.95240 1.70039 1.47829 1.42609 0.98565 0.85829 0.79062 0.79954 0.77349 1.19112 1.22763 1.17153 1.61985 1.59998 1.03432 1.01203 1.22259 0.97138 0.90290 1.01386 1.20567 0.97058 0.97055 0.85480 1.22567 0.83123 1.00580 0.98787 1.21853 1.02608 1.01046 0.97739 1.21911 0.92510 1.03874 1.02365 1.22790 0.99963 0.96534 0.90582 1.20440 0.88783 0.94111 0.88271 1.86497 1.43995 1.61076 1.48409 1.83964 1.30577 1.54228 1.39947 0.92220 0.94319 0.91631 0.92547 0.91414 0.93295 0.94351 0.89847 0.89787 0.81792 0.80811 0.91256 0.87059 0.74059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.28 7.92 71.98 0.57 -6.71 16 2 C 0.18 8.55 1.90 44.17 0.08 8.64 16 3 H 0.04 1.68 6.99 -2.39 -0.02 1.66 16 4 C -0.50 -28.86 8.49 25.60 0.22 -28.64 16 5 H 0.04 2.33 7.37 -2.91 -0.02 2.31 16 6 C 0.01 0.69 5.45 84.65 0.46 1.15 16 7 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 8 Si 0.95 44.52 24.37 68.60 1.67 46.19 16 9 H -0.27 -11.70 6.87 99.48 0.68 -11.02 16 10 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 11 H -0.25 -10.68 6.53 99.48 0.65 -10.03 16 12 N -0.54 -22.52 4.69 -906.04 -4.25 -26.78 16 13 C 0.04 1.41 8.40 127.69 1.07 2.48 16 14 C 0.13 4.25 5.07 85.56 0.43 4.69 16 15 C 0.00 0.01 6.22 24.83 0.15 0.16 16 16 C -0.21 -5.95 9.40 22.19 0.21 -5.74 16 17 C -0.19 -4.77 10.81 22.19 0.24 -4.53 16 18 C -0.05 -1.37 6.95 24.83 0.17 -1.19 16 19 C 0.16 2.99 7.57 71.24 0.54 3.53 16 20 O -0.59 -10.99 13.64 -148.98 -2.03 -13.02 16 21 O -0.19 -6.66 10.65 -2.52 -0.03 -6.69 16 22 H 0.06 2.36 6.42 -2.39 -0.02 2.34 16 23 H 0.04 1.61 3.27 -2.39 -0.01 1.60 16 24 H 0.06 2.14 6.91 -2.39 -0.02 2.12 16 25 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 26 H 0.07 2.31 6.31 -2.39 -0.02 2.29 16 27 H 0.05 2.15 6.76 -2.39 -0.02 2.13 16 28 H 0.04 1.29 6.46 -2.39 -0.02 1.27 16 29 H 0.08 2.82 7.93 -2.39 -0.02 2.80 16 30 H 0.08 2.43 7.06 -2.39 -0.02 2.41 16 31 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 32 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.41 2.76 9.12 -74.06 -0.68 2.08 16 Total: -1.00 -73.09 281.31 0.16 -72.93 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.35 Total: 12.87 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 4.15 Total: -26.17 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -3.95 Total: -86.12 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -2.06 Total: -19.71 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.67 Total: 46.19 kcal Total: -73.09 0.16 -72.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090834.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.066 kcal (2) G-P(sol) polarization free energy of solvation -73.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds