Wall clock time and date at job start Sun Mar 29 2020 22:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47093 * 240.00337 * 2 1 3 5 5 H 1.08004 * 119.99432 * 274.88023 * 4 2 1 6 6 C 1.37871 * 120.00052 * 94.87831 * 4 2 1 7 7 N 1.31527 * 120.00015 * 183.87921 * 6 4 2 8 8 Si 1.86795 * 120.00316 * 3.87981 * 6 4 2 9 9 H 1.48504 * 109.47111 * 84.42236 * 8 6 4 10 10 H 1.48501 * 109.47422 * 204.42411 * 8 6 4 11 11 H 1.48496 * 109.47267 * 324.42684 * 8 6 4 12 12 N 1.46891 * 109.46972 * 120.00201 * 2 1 3 13 13 C 1.46905 * 110.99947 * 176.04653 * 12 2 1 14 14 C 1.46905 * 111.00231 * 299.99836 * 12 2 1 15 15 C 1.50697 * 109.47013 * 170.00202 * 14 12 2 16 16 C 1.34510 * 125.79054 * 90.00772 * 15 14 12 17 17 C 1.41383 * 106.84334 * 179.97438 * 16 15 14 18 18 C 1.34509 * 106.83618 * 359.97438 * 17 16 15 19 19 C 1.50700 * 125.78602 * 180.02562 * 18 17 16 20 20 O 1.42905 * 109.47024 * 90.00508 * 19 18 17 21 21 O 1.34299 * 108.42477 * 359.74070 * 18 17 16 22 22 H 1.09005 * 109.46726 * 66.76594 * 1 2 3 23 23 H 1.08992 * 109.47141 * 186.76596 * 1 2 3 24 24 H 1.09004 * 109.46936 * 306.76892 * 1 2 3 25 25 H 0.96994 * 119.99796 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.47239 * 183.95069 * 13 12 2 27 27 H 1.08999 * 109.47256 * 63.95213 * 13 12 2 28 28 H 1.09001 * 109.47175 * 303.95594 * 13 12 2 29 29 H 1.09005 * 109.46925 * 290.00129 * 14 12 2 30 30 H 1.08998 * 109.47023 * 50.00057 * 14 12 2 31 31 H 1.08005 * 126.58227 * 0.02562 * 16 15 14 32 32 H 1.08002 * 126.58325 * 180.02562 * 17 16 15 33 33 H 1.09000 * 109.47258 * 209.99966 * 19 18 17 34 34 H 1.09001 * 109.47757 * 330.00218 * 19 18 17 35 35 H 0.96708 * 113.99651 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1373 -1.7853 -1.2284 6 6 2.3579 0.0120 -2.3589 7 7 2.7233 -0.6129 -3.4570 8 14 2.2801 1.8780 -2.3281 9 1 3.5485 2.4173 -1.7754 10 1 2.0853 2.3883 -3.7090 11 1 1.1445 2.3121 -1.4753 12 7 2.0196 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4211 15 6 1.8580 -0.8912 3.6158 16 6 2.9877 -0.8508 4.3448 17 6 2.8546 -1.8247 5.3610 18 6 1.6512 -2.4016 5.1925 19 6 1.0732 -3.5003 6.0468 20 8 0.3350 -2.9254 7.1270 21 8 1.0495 -1.8280 4.1377 22 1 -0.3633 0.4054 -0.9444 23 1 -0.3633 -1.0204 0.1211 24 1 -0.3633 0.6152 0.8233 25 1 2.9526 -0.1047 -4.2507 26 1 3.8164 -1.3721 2.0499 27 1 3.9193 0.2043 1.2300 28 1 3.8070 -1.2915 0.2718 29 1 2.0519 0.9346 2.5280 30 1 0.4722 0.1324 2.3564 31 1 3.8339 -0.1989 4.1850 32 1 3.5796 -2.0598 6.1262 33 1 0.4102 -4.1196 5.4428 34 1 1.8812 -4.1142 6.4450 35 1 -0.0658 -3.5760 7.7196 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:20 Heat of formation + Delta-G solvation = -24.566053 kcal Electronic energy + Delta-G solvation = -17138.532771 eV Core-core repulsion = 14331.839065 eV Total energy + Delta-G solvation = -2806.693706 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.37156 -37.33139 -36.92366 -33.06033 -32.60751 -31.14832 -29.73295 -27.87832 -25.37386 -24.48540 -22.70496 -21.53171 -20.01480 -19.32236 -17.79797 -17.13233 -16.50332 -15.71105 -15.19053 -14.87789 -14.22911 -14.16480 -14.01098 -13.10755 -13.03613 -12.65894 -12.57889 -12.43980 -12.06071 -11.81721 -11.35050 -11.07877 -10.87286 -10.69285 -10.40478 -10.34408 -10.22091 -9.82013 -9.65053 -9.14915 -8.61714 -8.21274 -7.39949 -6.11919 -4.10825 1.81929 2.73414 3.04005 3.23215 3.32644 3.33626 4.30092 4.36277 4.76305 4.85217 5.00271 5.09383 5.23049 5.25587 5.29098 5.62362 5.83354 5.96445 6.11297 6.14573 6.25619 6.29375 6.41830 6.55138 6.63490 6.71287 6.82828 7.00382 7.26003 7.33063 7.40978 7.58047 7.91956 8.03190 8.60730 8.98626 9.50919 11.00950 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.047449 B = 0.005263 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.964650 B = 5318.990725 C = 5388.126469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.180 3.820 3 H 0.003 0.997 4 C -0.501 4.501 5 H 0.082 0.918 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.872 3.128 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.266 1.266 12 N -0.527 5.527 13 C 0.034 3.966 14 C 0.116 3.884 15 C 0.037 3.963 16 C -0.223 4.223 17 C -0.181 4.181 18 C -0.037 4.037 19 C 0.162 3.838 20 O -0.568 6.568 21 O -0.161 6.161 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.022 0.978 25 H 0.265 0.735 26 H 0.050 0.950 27 H 0.010 0.990 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 -2.276 17.538 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.074 3.926 3 H 0.021 0.979 4 C -0.540 4.540 5 H 0.100 0.900 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.699 3.301 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.191 1.191 12 N -0.252 5.252 13 C -0.114 4.114 14 C -0.012 4.012 15 C -0.015 4.015 16 C -0.243 4.243 17 C -0.200 4.200 18 C -0.088 4.088 19 C 0.084 3.916 20 O -0.375 6.375 21 O -0.057 6.057 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.029 0.971 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.754 -2.248 16.912 17.151 hybrid contribution 0.463 1.356 0.211 1.449 sum -1.291 -0.891 17.123 17.195 Atomic orbital electron populations 1.22022 0.97765 1.00618 0.99016 1.19776 0.92341 0.92189 0.88334 0.97943 1.20852 1.43228 0.95972 0.93904 0.90020 1.24987 0.94602 0.97974 0.95403 1.69889 1.45811 1.35713 1.01961 0.86947 0.79037 0.86804 0.77288 1.20304 1.21341 1.19053 1.62171 1.10649 1.52030 1.00400 1.22288 0.87433 0.98988 1.02735 1.20686 1.02452 0.91820 0.86202 1.22620 0.90196 0.91693 0.96986 1.21539 0.99844 1.04181 0.98729 1.21506 0.97932 0.99078 1.01510 1.21793 0.93816 1.01194 0.91953 1.20229 0.95229 0.89792 0.86317 1.86582 1.71622 1.38038 1.41237 1.83979 1.42727 1.41905 1.37074 0.92945 0.92586 0.95938 0.92542 0.93171 0.97102 0.89334 0.92470 0.89057 0.83671 0.83792 0.91744 0.90488 0.76910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.76 37.16 0.33 -2.60 16 2 C 0.18 4.23 1.70 -68.87 -0.12 4.11 16 3 H 0.00 0.07 5.36 -51.93 -0.28 -0.21 16 4 C -0.50 -13.78 7.39 -34.44 -0.25 -14.04 16 5 H 0.08 2.50 8.05 -52.48 -0.42 2.07 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 7 N -0.90 -26.84 13.96 55.43 0.77 -26.06 16 8 Si 0.87 21.15 26.95 -169.99 -4.58 16.56 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.18 6.88 56.52 0.39 -5.80 16 12 N -0.53 -11.25 4.61 -237.72 -1.10 -12.35 16 13 C 0.03 0.68 9.01 60.07 0.54 1.22 16 14 C 0.12 2.11 5.31 -4.97 -0.03 2.08 16 15 C 0.04 0.64 6.22 -35.63 -0.22 0.42 16 16 C -0.22 -3.49 9.40 -39.70 -0.37 -3.86 16 17 C -0.18 -2.59 10.81 -39.70 -0.43 -3.02 16 18 C -0.04 -0.56 6.95 -35.63 -0.25 -0.81 16 19 C 0.16 1.70 7.57 36.01 0.27 1.97 16 20 O -0.57 -5.98 13.64 -35.23 -0.48 -6.46 16 21 O -0.16 -2.88 10.65 5.72 0.06 -2.82 16 22 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.02 0.41 6.57 -51.93 -0.34 0.07 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.05 0.92 6.31 -51.93 -0.33 0.59 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 2.01 6.82 -51.93 -0.35 1.65 16 29 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 30 H 0.09 1.61 5.97 -51.93 -0.31 1.30 16 31 H 0.15 2.03 8.06 -52.48 -0.42 1.60 16 32 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.38 1.78 9.12 45.56 0.42 2.20 16 LS Contribution 290.95 15.07 4.38 4.38 Total: -1.00 -32.38 290.95 -5.71 -38.09 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -4.15 Total: 1.22 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -0.63 Total: -12.57 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.32 Total: -38.41 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.42 Total: -9.28 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.58 Total: 16.56 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.38 -5.71 -38.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.525 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds