Wall clock time and date at job start Sun Mar 29 2020 22:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47093 * 240.00337 * 2 1 3 5 5 H 1.08004 * 119.99432 * 274.88023 * 4 2 1 6 6 C 1.37871 * 120.00052 * 94.87831 * 4 2 1 7 7 N 1.31527 * 120.00015 * 183.87921 * 6 4 2 8 8 Si 1.86795 * 120.00316 * 3.87981 * 6 4 2 9 9 H 1.48504 * 109.47111 * 84.42236 * 8 6 4 10 10 H 1.48501 * 109.47422 * 204.42411 * 8 6 4 11 11 H 1.48496 * 109.47267 * 324.42684 * 8 6 4 12 12 N 1.46891 * 109.46972 * 120.00201 * 2 1 3 13 13 C 1.46905 * 110.99947 * 176.04653 * 12 2 1 14 14 C 1.46905 * 111.00231 * 299.99836 * 12 2 1 15 15 C 1.50697 * 109.47013 * 170.00202 * 14 12 2 16 16 C 1.34510 * 125.79054 * 90.00772 * 15 14 12 17 17 C 1.41383 * 106.84334 * 179.97438 * 16 15 14 18 18 C 1.34509 * 106.83618 * 359.97438 * 17 16 15 19 19 C 1.50700 * 125.78602 * 180.02562 * 18 17 16 20 20 O 1.42905 * 109.47024 * 90.00508 * 19 18 17 21 21 O 1.34299 * 108.42477 * 359.74070 * 18 17 16 22 22 H 1.09005 * 109.46726 * 66.76594 * 1 2 3 23 23 H 1.08992 * 109.47141 * 186.76596 * 1 2 3 24 24 H 1.09004 * 109.46936 * 306.76892 * 1 2 3 25 25 H 0.96994 * 119.99796 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.47239 * 183.95069 * 13 12 2 27 27 H 1.08999 * 109.47256 * 63.95213 * 13 12 2 28 28 H 1.09001 * 109.47175 * 303.95594 * 13 12 2 29 29 H 1.09005 * 109.46925 * 290.00129 * 14 12 2 30 30 H 1.08998 * 109.47023 * 50.00057 * 14 12 2 31 31 H 1.08005 * 126.58227 * 0.02562 * 16 15 14 32 32 H 1.08002 * 126.58325 * 180.02562 * 17 16 15 33 33 H 1.09000 * 109.47258 * 209.99966 * 19 18 17 34 34 H 1.09001 * 109.47757 * 330.00218 * 19 18 17 35 35 H 0.96708 * 113.99651 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1373 -1.7853 -1.2284 6 6 2.3579 0.0120 -2.3589 7 7 2.7233 -0.6129 -3.4570 8 14 2.2801 1.8780 -2.3281 9 1 3.5485 2.4173 -1.7754 10 1 2.0853 2.3883 -3.7090 11 1 1.1445 2.3121 -1.4753 12 7 2.0196 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4211 15 6 1.8580 -0.8912 3.6158 16 6 2.9877 -0.8508 4.3448 17 6 2.8546 -1.8247 5.3610 18 6 1.6512 -2.4016 5.1925 19 6 1.0732 -3.5003 6.0468 20 8 0.3350 -2.9254 7.1270 21 8 1.0495 -1.8280 4.1377 22 1 -0.3633 0.4054 -0.9444 23 1 -0.3633 -1.0204 0.1211 24 1 -0.3633 0.6152 0.8233 25 1 2.9526 -0.1047 -4.2507 26 1 3.8164 -1.3721 2.0499 27 1 3.9193 0.2043 1.2300 28 1 3.8070 -1.2915 0.2718 29 1 2.0519 0.9346 2.5280 30 1 0.4722 0.1324 2.3564 31 1 3.8339 -0.1989 4.1850 32 1 3.5796 -2.0598 6.1262 33 1 0.4102 -4.1196 5.4428 34 1 1.8812 -4.1142 6.4450 35 1 -0.0658 -3.5760 7.7196 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:19 Heat of formation + Delta-G solvation = -49.973674 kcal Electronic energy + Delta-G solvation = -17139.634528 eV Core-core repulsion = 14331.839065 eV Total energy + Delta-G solvation = -2807.795463 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.55248 -38.94687 -37.75168 -34.88212 -33.96033 -32.67601 -31.25867 -29.22176 -27.08188 -26.02954 -24.16371 -22.70933 -21.38387 -20.94118 -19.15092 -18.56867 -17.75936 -17.03246 -16.72219 -16.09588 -15.71747 -15.59008 -15.41928 -14.71681 -14.45263 -14.24350 -13.99234 -13.73371 -13.51859 -13.09121 -12.89692 -12.71202 -12.65131 -12.34936 -12.14529 -11.92677 -11.80568 -11.14229 -11.08192 -10.81909 -10.75289 -9.43239 -9.02782 -8.28613 -6.32295 0.65534 1.32907 1.35146 1.45371 1.59313 1.94579 2.33057 3.01888 3.34706 3.48063 3.87491 4.04081 4.11834 4.16266 4.34681 4.40425 4.46924 4.49122 4.55832 4.77255 4.80090 4.86085 4.89827 5.02855 5.08870 5.15443 5.25270 5.45222 5.60231 5.66321 6.04537 6.20568 6.33815 6.62424 6.75858 6.88202 7.33422 8.88278 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.047449 B = 0.005263 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.964650 B = 5318.990725 C = 5388.126469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.182 3.818 3 H 0.007 0.993 4 C -0.500 4.500 5 H 0.032 0.968 6 C 0.017 3.983 7 N -0.946 5.946 8 Si 0.936 3.064 9 H -0.268 1.268 10 H -0.286 1.286 11 H -0.244 1.244 12 N -0.544 5.544 13 C 0.042 3.958 14 C 0.121 3.879 15 C 0.003 3.997 16 C -0.217 4.217 17 C -0.188 4.188 18 C -0.048 4.048 19 C 0.162 3.838 20 O -0.589 6.589 21 O -0.187 6.187 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.266 0.734 26 H 0.068 0.932 27 H 0.021 0.979 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.161 0.839 32 H 0.174 0.826 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 -1.122 20.047 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.075 3.925 3 H 0.024 0.976 4 C -0.538 4.538 5 H 0.051 0.949 6 C -0.181 4.181 7 N -0.586 5.586 8 Si 0.760 3.240 9 H -0.194 1.194 10 H -0.212 1.212 11 H -0.168 1.168 12 N -0.270 5.270 13 C -0.106 4.106 14 C -0.006 4.006 15 C -0.048 4.048 16 C -0.237 4.237 17 C -0.207 4.207 18 C -0.098 4.098 19 C 0.085 3.915 20 O -0.400 6.400 21 O -0.084 6.084 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.178 0.822 32 H 0.191 0.809 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -1.896 -1.110 19.466 19.590 hybrid contribution 0.505 0.840 -0.446 1.077 sum -1.391 -0.270 19.020 19.073 Atomic orbital electron populations 1.21924 0.96160 1.00840 1.00069 1.19647 0.93509 0.91728 0.87617 0.97588 1.20973 1.42852 0.93977 0.96035 0.94917 1.25811 0.94300 1.03229 0.94767 1.70043 1.47776 1.37880 1.02926 0.85904 0.80033 0.80354 0.77698 1.19363 1.21213 1.16770 1.62005 1.11070 1.52782 1.01103 1.22158 0.87237 0.99444 1.01728 1.20642 1.02634 0.92456 0.84905 1.22531 0.91329 0.93065 0.97868 1.21849 0.99399 1.04080 0.98325 1.21896 0.98419 0.98541 1.01829 1.22783 0.94300 1.01372 0.91316 1.20435 0.96561 0.88376 0.86165 1.86501 1.72003 1.39823 1.41657 1.83953 1.43703 1.42451 1.38303 0.93559 0.93459 0.92550 0.92461 0.91300 0.96036 0.92826 0.90785 0.88794 0.82164 0.80888 0.91111 0.87123 0.74045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 8.76 71.98 0.63 -4.86 16 2 C 0.18 8.43 1.70 44.17 0.08 8.51 16 3 H 0.01 0.30 5.36 -2.39 -0.01 0.29 16 4 C -0.50 -28.28 7.39 25.60 0.19 -28.09 16 5 H 0.03 2.11 8.05 -2.91 -0.02 2.09 16 6 C 0.02 0.95 5.47 84.65 0.46 1.42 16 7 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 8 Si 0.94 43.20 26.95 68.60 1.85 45.05 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.24 -10.35 6.88 99.48 0.68 -9.67 16 12 N -0.54 -22.93 4.61 -906.02 -4.18 -27.11 16 13 C 0.04 1.71 9.01 127.69 1.15 2.86 16 14 C 0.12 4.17 5.31 85.55 0.45 4.62 16 15 C 0.00 0.10 6.22 24.83 0.15 0.25 16 16 C -0.22 -6.27 9.40 22.19 0.21 -6.06 16 17 C -0.19 -4.86 10.81 22.19 0.24 -4.62 16 18 C -0.05 -1.33 6.95 24.83 0.17 -1.16 16 19 C 0.16 2.95 7.57 71.24 0.54 3.49 16 20 O -0.59 -10.82 13.64 -148.98 -2.03 -12.85 16 21 O -0.19 -6.48 10.65 -2.44 -0.03 -6.51 16 22 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.06 1.95 6.57 -2.39 -0.02 1.93 16 25 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 26 H 0.07 2.47 6.31 -2.39 -0.02 2.45 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 2.51 6.82 -2.39 -0.02 2.49 16 29 H 0.07 2.29 8.12 -2.38 -0.02 2.27 16 30 H 0.09 3.13 5.97 -2.39 -0.01 3.11 16 31 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.41 2.62 9.12 -74.05 -0.68 1.95 16 Total: -1.00 -71.52 290.95 0.58 -70.94 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.39 Total: 12.34 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 4.28 Total: -23.65 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -3.88 Total: -85.33 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -2.06 Total: -19.36 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.85 Total: 45.05 kcal Total: -71.52 0.58 -70.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.970 kcal (2) G-P(sol) polarization free energy of solvation -71.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds