Wall clock time and date at job start Sun Mar 29 2020 22:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46927 * 2 1 4 4 H 1.08997 * 109.47195 * 54.71642 * 3 2 1 5 5 N 1.46901 * 109.46950 * 294.71858 * 3 2 1 6 6 C 1.46896 * 111.00244 * 154.31017 * 5 3 2 7 7 C 1.53002 * 109.47334 * 185.20448 * 6 5 3 8 8 C 1.50700 * 109.47018 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99971 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99668 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00334 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99799 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47166 * 60.00540 * 12 10 8 14 14 H 1.48504 * 109.47109 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47289 * 299.99928 * 12 10 8 16 16 C 1.50696 * 109.47126 * 174.71720 * 3 2 1 17 17 N 1.29947 * 126.28911 * 75.02477 * 16 3 2 18 18 O 1.21298 * 110.25092 * 179.97438 * 17 16 3 19 19 C 1.33646 * 109.81106 * 359.97438 * 18 17 16 20 20 C 1.50701 * 126.54624 * 180.02562 * 19 18 17 21 21 N 1.31127 * 106.89588 * 359.77507 * 19 18 17 22 22 H 1.09008 * 109.46716 * 180.21450 * 1 2 3 23 23 H 1.09003 * 109.47291 * 300.20843 * 1 2 3 24 24 H 1.08996 * 109.47171 * 60.21743 * 1 2 3 25 25 H 1.08994 * 109.47370 * 239.99983 * 2 1 3 26 26 H 1.09000 * 109.47418 * 119.99477 * 2 1 3 27 27 H 1.00903 * 110.99589 * 278.26173 * 5 3 2 28 28 H 1.09004 * 109.47047 * 65.20536 * 6 5 3 29 29 H 1.09003 * 109.47239 * 305.21033 * 6 5 3 30 30 H 1.08996 * 109.47393 * 300.00031 * 7 6 5 31 31 H 1.08994 * 109.46523 * 60.00312 * 7 6 5 32 32 H 0.96997 * 120.00195 * 180.02562 * 11 10 8 33 33 H 1.08991 * 109.47623 * 359.97438 * 20 19 18 34 34 H 1.09006 * 109.46952 * 119.98062 * 20 19 18 35 35 H 1.09004 * 109.47157 * 239.97779 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6014 1.9830 0.8389 5 7 1.6571 2.0972 -1.2581 6 6 1.5615 3.5530 -1.0863 7 6 1.0369 4.1856 -2.3768 8 6 0.9382 5.6789 -2.2002 9 1 1.2218 6.1316 -1.2616 10 6 0.4860 6.4672 -3.2370 11 7 0.1403 5.9160 -4.3799 12 14 0.3644 8.3184 -3.0184 13 1 1.7081 8.8696 -2.7084 14 1 -0.1449 8.9324 -4.2710 15 1 -0.5660 8.6250 -1.9024 16 6 3.5412 1.4446 0.1308 17 7 4.3949 1.1441 -0.8017 18 8 5.5283 1.2427 -0.3809 19 6 5.5046 1.6277 0.8987 20 6 6.6988 1.8656 1.7865 21 7 4.2438 1.7640 1.2323 22 1 -0.3633 -1.0278 0.0038 23 1 -0.3634 0.5171 0.8881 24 1 -0.3633 0.5104 -0.8919 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 2.3010 1.8621 -1.9986 28 1 2.5477 3.9574 -0.8581 29 1 0.8782 3.7781 -0.2673 30 1 1.7202 3.9605 -3.1957 31 1 0.0508 3.7811 -2.6048 32 1 -0.1775 6.4706 -5.1094 33 1 7.6130 1.6744 1.2248 34 1 6.6942 2.8994 2.1323 35 1 6.6528 1.1952 2.6448 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097374418.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:08 Heat of formation + Delta-G solvation = 49.321255 kcal Electronic energy + Delta-G solvation = -16910.249574 eV Core-core repulsion = 14139.052614 eV Total energy + Delta-G solvation = -2771.196960 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.54540 -37.65335 -35.43626 -33.81396 -33.00098 -32.11323 -29.29433 -28.75504 -26.39467 -23.84126 -23.58292 -22.36415 -20.56103 -20.16777 -18.10470 -17.60323 -16.35348 -15.55455 -15.06511 -14.58587 -14.50327 -14.09312 -13.68333 -13.52046 -13.24029 -12.93746 -12.36486 -12.14458 -11.98391 -11.85178 -11.39488 -11.15583 -11.04334 -10.94856 -10.89908 -10.68534 -10.53198 -10.06801 -9.84190 -9.37925 -9.15515 -8.35716 -8.08473 -5.98843 -4.01769 1.17835 2.27558 2.82009 3.33984 3.38111 3.40601 3.62520 4.03253 4.43439 4.66321 4.89735 5.00651 5.02704 5.19478 5.25762 5.36893 5.41272 5.61581 5.73632 5.80334 5.94036 6.02001 6.11409 6.25168 6.30185 6.37423 6.61745 6.93607 7.34239 7.68078 7.74272 7.89529 8.06516 8.23431 8.42823 9.04805 9.61828 11.12538 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.005667 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.953787 B = 4939.752111 C = 5767.271844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C 0.174 3.826 4 H 0.104 0.896 5 N -0.668 5.668 6 C 0.064 3.936 7 C 0.028 3.972 8 C -0.523 4.523 9 H 0.053 0.947 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.893 3.107 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.151 3.849 17 N -0.378 5.378 18 O 0.075 5.925 19 C 0.167 3.833 20 C -0.059 4.059 21 N -0.480 5.480 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.345 0.655 28 H 0.012 0.988 29 H 0.063 0.937 30 H 0.013 0.987 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.234 -11.250 11.956 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C 0.061 3.939 4 H 0.122 0.878 5 N -0.298 5.298 6 C -0.063 4.063 7 C -0.009 4.009 8 C -0.562 4.562 9 H 0.071 0.929 10 C -0.142 4.142 11 N -0.532 5.532 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.125 4.125 17 N -0.086 5.086 18 O 0.016 5.984 19 C -0.054 4.054 20 C -0.117 4.117 21 N -0.215 5.215 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.164 0.836 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.897 -11.435 11.308 18.379 hybrid contribution 1.152 1.390 0.160 1.812 sum 10.049 -10.045 11.468 18.259 Atomic orbital electron populations 1.21640 0.94076 1.00944 1.03252 1.21460 0.97495 0.93603 1.01580 1.20342 0.79974 0.97622 0.95979 0.87812 1.60846 1.53332 1.11442 1.04167 1.22275 0.98231 0.83706 1.02138 1.19035 0.96975 0.94445 0.90466 1.21116 1.44013 0.92052 0.99002 0.92877 1.24989 0.95363 0.98670 0.95225 1.69964 1.44247 1.35500 1.03447 0.86644 0.78381 0.85479 0.77400 1.20350 1.21207 1.20168 1.27303 1.02075 0.98272 0.84808 1.74538 0.89839 1.21394 1.22835 1.85286 1.24814 1.62359 1.25892 1.28849 0.96201 0.95375 0.84943 1.20341 0.89980 1.04932 0.96428 1.71890 1.01387 1.20677 1.27542 0.93269 0.93041 0.90572 0.91610 0.92307 0.83571 0.96995 0.91890 0.96832 0.95411 0.92908 0.88661 0.87962 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.80 37.16 0.36 -1.47 16 2 C -0.10 -1.40 5.59 -26.73 -0.15 -1.55 16 3 C 0.17 2.81 2.53 -68.86 -0.17 2.64 16 4 H 0.10 1.69 7.71 -51.93 -0.40 1.29 16 5 N -0.67 -12.63 5.69 -107.95 -0.61 -13.24 16 6 C 0.06 1.43 5.45 -3.83 -0.02 1.41 16 7 C 0.03 0.76 5.28 -27.88 -0.15 0.61 16 8 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 9 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -27.35 13.29 55.43 0.74 -26.62 16 12 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C 0.15 2.49 6.86 -156.38 -1.07 1.41 16 17 N -0.38 -6.31 11.61 30.90 0.36 -5.96 16 18 O 0.07 1.07 11.31 18.09 0.20 1.27 16 19 C 0.17 2.04 8.51 -13.06 -0.11 1.93 16 20 C -0.06 -0.36 10.51 36.01 0.38 0.02 16 21 N -0.48 -7.33 11.55 -9.87 -0.11 -7.45 16 22 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.08 1.13 7.77 -51.93 -0.40 0.73 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.35 6.75 8.10 -39.29 -0.32 6.43 16 28 H 0.01 0.27 8.11 -51.93 -0.42 -0.15 16 29 H 0.06 1.37 7.93 -51.93 -0.41 0.95 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 302.33 15.07 4.56 4.56 Total: -1.00 -32.82 302.33 -6.54 -39.36 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.30 Total: -0.04 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -1.34 Total: -8.91 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.37 Total: -53.27 kcal Atomic # 8 Polarization: 1.07 SS G_CDS: 0.20 Total: 1.27 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.82 -6.54 -39.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097374418.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.677 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds